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Volumn 5, Issue 2-3, 2008, Pages

B-cell epitope engineering: A matter of recognizing protein features and motives

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; EPITOPE;

EID: 71849120013     PISSN: 17406749     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ddtec.2009.04.001     Document Type: Review
Times cited : (9)

References (32)
  • 2
    • 0029689665 scopus 로고    scopus 로고
    • The crystal structures of complexes formed between lysozyme and antibody fragments
    • Jollé S.P. (Ed), Birkhauser
    • Bentley G.H. The crystal structures of complexes formed between lysozyme and antibody fragments. In: Jollé S.P. (Ed). Lysozymes: Model Enzymes in Biochemistry and Biology (1996), Birkhauser 301-319
    • (1996) Lysozymes: Model Enzymes in Biochemistry and Biology , pp. 301-319
    • Bentley, G.H.1
  • 3
    • 57349188380 scopus 로고    scopus 로고
    • Models for prediction of immunogenicity
    • van de Weert M., and Møller E.H. (Eds), AAPS Press
    • Roggen E.L. Models for prediction of immunogenicity. In: van de Weert M., and Møller E.H. (Eds). Immunogenicity of Biopharmaceuticals (2008), AAPS Press 75-95
    • (2008) Immunogenicity of Biopharmaceuticals , pp. 75-95
    • Roggen, E.L.1
  • 4
    • 31144436591 scopus 로고    scopus 로고
    • An in silico method using an epitope motif database for predicting the location of antigenic determinants on proteins in a structural context
    • Batori V., et al. An in silico method using an epitope motif database for predicting the location of antigenic determinants on proteins in a structural context. J. Mol. Recogn. 19 (2006) 21-29
    • (2006) J. Mol. Recogn. , vol.19 , pp. 21-29
    • Batori, V.1
  • 5
    • 25644434412 scopus 로고    scopus 로고
    • A novel approach for investigation of specific and cross-reactive IgE epitopes on Bet v 1 and homologous food allergens in individual patients
    • Mittag D., et al. A novel approach for investigation of specific and cross-reactive IgE epitopes on Bet v 1 and homologous food allergens in individual patients. Mol. Immunol. 43 (2006) 79-89
    • (2006) Mol. Immunol. , vol.43 , pp. 79-89
    • Mittag, D.1
  • 6
    • 33644873221 scopus 로고    scopus 로고
    • Epitome: database of structure-inferred antigenic epitopes
    • Schlessinger A., et al. Epitome: database of structure-inferred antigenic epitopes. Nucleic. Acid. Res. 34 (2006) D777-D780
    • (2006) Nucleic. Acid. Res. , vol.34
    • Schlessinger, A.1
  • 7
    • 0036211926 scopus 로고    scopus 로고
    • JenPep: a database of quantitative functional peptide data for immunology
    • Blythe M.J., et al. JenPep: a database of quantitative functional peptide data for immunology. Bioinformatics 18 (2002) 434-439
    • (2002) Bioinformatics , vol.18 , pp. 434-439
    • Blythe, M.J.1
  • 8
    • 34248581488 scopus 로고    scopus 로고
    • Towards a consensus on datasets and evaluation metrics for developing B cell epitope prediction tools
    • Greenbaum J.A., et al. Towards a consensus on datasets and evaluation metrics for developing B cell epitope prediction tools. J. Mol. Recogn. 20 (2007) 75-82
    • (2007) J. Mol. Recogn. , vol.20 , pp. 75-82
    • Greenbaum, J.A.1
  • 9
    • 0001803612 scopus 로고
    • Epitope predictions from the primary structure of proteins
    • Wisdom G.B. (Ed), IRL Press
    • Pellequer J.L., et al. Epitope predictions from the primary structure of proteins. In: Wisdom G.B. (Ed). Peptide Antigens, A Practical Approach (1994), IRL Press 7-25
    • (1994) Peptide Antigens, A Practical Approach , pp. 7-25
    • Pellequer, J.L.1
  • 10
    • 33747617386 scopus 로고    scopus 로고
    • Recent developments with B-cell epitope identification for predictive studies
    • Roggen E.L. Recent developments with B-cell epitope identification for predictive studies. J. Immunotox. 3 (2006) 1-13
    • (2006) J. Immunotox. , vol.3 , pp. 1-13
    • Roggen, E.L.1
  • 11
    • 11144246404 scopus 로고    scopus 로고
    • Benchmarking B cell epitope prediction
    • Blythe M.J., and Flower D.R. Benchmarking B cell epitope prediction. Protein Sci. 14 (2005) 246-248
    • (2005) Protein Sci. , vol.14 , pp. 246-248
    • Blythe, M.J.1    Flower, D.R.2
  • 12
    • 0022005824 scopus 로고
    • NMR studies of myelin basic protein. Conformation of a peptide that is an antigenic determinant for B-cell reactivity
    • Mendez G.L., and Moore W.J. NMR studies of myelin basic protein. Conformation of a peptide that is an antigenic determinant for B-cell reactivity. Biochem. J. 229 (1985) 305-313
    • (1985) Biochem. J. , vol.229 , pp. 305-313
    • Mendez, G.L.1    Moore, W.J.2
  • 13
    • 0023984742 scopus 로고
    • The antigenic index: a novel algorithm for predicting antigenic determinants
    • Jameson B.A., and Wolf H. The antigenic index: a novel algorithm for predicting antigenic determinants. CABIOS 4 (1988) 181-186
    • (1988) CABIOS , vol.4 , pp. 181-186
    • Jameson, B.A.1    Wolf, H.2
  • 14
    • 0032829397 scopus 로고    scopus 로고
    • Predictive estimation of protein linear epitopes by using the program PEOPLE
    • Alix A.J. Predictive estimation of protein linear epitopes by using the program PEOPLE. Vaccine 18 (2000) 311-314
    • (2000) Vaccine , vol.18 , pp. 311-314
    • Alix, A.J.1
  • 15
    • 0037263777 scopus 로고    scopus 로고
    • BEPITOPE: predicting the location of continuous epitopes and patterns in proteins
    • Odorico M., and Pellequer J.-L. BEPITOPE: predicting the location of continuous epitopes and patterns in proteins. J. Mol. Recogn. 16 (2003) 20-22
    • (2003) J. Mol. Recogn. , vol.16 , pp. 20-22
    • Odorico, M.1    Pellequer, J.-L.2
  • 16
    • 35048872790 scopus 로고    scopus 로고
    • BcePred: Prediction of continuous B-cell epitopes in antigenic sequences using physicochemical properties
    • Saha S., and Raghava G.P. BcePred: Prediction of continuous B-cell epitopes in antigenic sequences using physicochemical properties. ICARIS (2004) 197-204
    • (2004) ICARIS , pp. 197-204
    • Saha, S.1    Raghava, G.P.2
  • 17
    • 33748254730 scopus 로고    scopus 로고
    • Prediction of continuous B-cell epitopes in an antigen using recurrent neural network
    • Saha S., and Raghava G.P. Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins 65 (2006) 40-48
    • (2006) Proteins , vol.65 , pp. 40-48
    • Saha, S.1    Raghava, G.P.2
  • 18
    • 33751104704 scopus 로고    scopus 로고
    • Improved method for predicting linear B-cell epitopes
    • Larsen J.E., et al. Improved method for predicting linear B-cell epitopes. Immunome Res. 2 (2006) 2
    • (2006) Immunome Res. , vol.2 , pp. 2
    • Larsen, J.E.1
  • 19
    • 33745030152 scopus 로고    scopus 로고
    • Machine learning approaches for prediction of linear B-cell epitopes on proteins
    • Sollner J., and Mayer B. Machine learning approaches for prediction of linear B-cell epitopes on proteins. J. Mol. Recogn. 19 (2006) 200-208
    • (2006) J. Mol. Recogn. , vol.19 , pp. 200-208
    • Sollner, J.1    Mayer, B.2
  • 20
    • 23144457577 scopus 로고    scopus 로고
    • CEP: a conformational epitope prediction server
    • Kulkarni-Kale U., et al. CEP: a conformational epitope prediction server. Nucleic Acid. Res. 33 (2005) W168-W171
    • (2005) Nucleic Acid. Res. , vol.33
    • Kulkarni-Kale, U.1
  • 21
    • 33751099863 scopus 로고    scopus 로고
    • Prediction of residues in discontinuous B-cell epitopes using protein 3D structures
    • Haste-Andersen P., et al. Prediction of residues in discontinuous B-cell epitopes using protein 3D structures. Protein Sci. 15 (2006) 2558-2567
    • (2006) Protein Sci. , vol.15 , pp. 2558-2567
    • Haste-Andersen, P.1
  • 22
    • 45449086674 scopus 로고    scopus 로고
    • PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half-sphere exposure
    • Sweredoski M.J., and Baldi P. PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half-sphere exposure. Bioinformatics 24 (2008) 1459-1460
    • (2008) Bioinformatics , vol.24 , pp. 1459-1460
    • Sweredoski, M.J.1    Baldi, P.2
  • 23
    • 7944223046 scopus 로고    scopus 로고
    • Computational methods for prediction of T-cell epitopes - a framework for modeling, testing, and applications
    • Brusic V., et al. Computational methods for prediction of T-cell epitopes - a framework for modeling, testing, and applications. Methods 34 (2004) 436-443
    • (2004) Methods , vol.34 , pp. 436-443
    • Brusic, V.1
  • 24
    • 33645356185 scopus 로고    scopus 로고
    • Immunomics: discovering new targets for vaccines and therapeutics
    • De Groot A.S. Immunomics: discovering new targets for vaccines and therapeutics. Drug Discov. Today 11 (2006) 203-209
    • (2006) Drug Discov. Today , vol.11 , pp. 203-209
    • De Groot, A.S.1
  • 25
    • 0033836431 scopus 로고    scopus 로고
    • Structural biology of allergens
    • Aalberse R.C. Structural biology of allergens. J. Allergy Clin. Immunol. 106 (2000) 228-238
    • (2000) J. Allergy Clin. Immunol. , vol.106 , pp. 228-238
    • Aalberse, R.C.1
  • 26
    • 0032828537 scopus 로고    scopus 로고
    • Cockroach allergens and asthma in Brasil: identification of tropomyosin as a major allergen with potential cross-reactivity with mite and shrimp allergens
    • Santos A.B., et al. Cockroach allergens and asthma in Brasil: identification of tropomyosin as a major allergen with potential cross-reactivity with mite and shrimp allergens. J. Allergy Clin. Immunol. 104 (1999) 329-337
    • (1999) J. Allergy Clin. Immunol. , vol.104 , pp. 329-337
    • Santos, A.B.1
  • 27
    • 0035725709 scopus 로고    scopus 로고
    • cDNA cloning and molecular identification of the major oyster allergen from the Pacific oyster Crassostera gigas
    • Leung P.S., and Chu K.H. cDNA cloning and molecular identification of the major oyster allergen from the Pacific oyster Crassostera gigas. Clin. Exp. Allergy 31 (2001) 1287-1294
    • (2001) Clin. Exp. Allergy , vol.31 , pp. 1287-1294
    • Leung, P.S.1    Chu, K.H.2
  • 28
    • 0036264052 scopus 로고    scopus 로고
    • Current understanding of cross-reactivity of food allergens and pollen
    • Vieths S., et al. Current understanding of cross-reactivity of food allergens and pollen. Ann. N. Y. Acad. Sci. 964 (2002) 47-68
    • (2002) Ann. N. Y. Acad. Sci. , vol.964 , pp. 47-68
    • Vieths, S.1
  • 29
    • 0036673480 scopus 로고    scopus 로고
    • Bioinformatic methods for allergenicity assessment using a comprehensive allergen database
    • Hileman R.E., et al. Bioinformatic methods for allergenicity assessment using a comprehensive allergen database. Int. Arch. Allergy Immunol. 128 (2002) 280-291
    • (2002) Int. Arch. Allergy Immunol. , vol.128 , pp. 280-291
    • Hileman, R.E.1
  • 30
    • 0031570734 scopus 로고    scopus 로고
    • Identification and mutational analysis of the immunodominant IgE binding epitopes of the major peanut allergen Ara h 2
    • Stanley J.S., et al. Identification and mutational analysis of the immunodominant IgE binding epitopes of the major peanut allergen Ara h 2. Arch. Biochem. Biophys. 342 (1997) 244-253
    • (1997) Arch. Biochem. Biophys. , vol.342 , pp. 244-253
    • Stanley, J.S.1
  • 31
    • 0034235234 scopus 로고    scopus 로고
    • Dominant epitopes and allergic cross-reactivity: complex formation between a Fab fragment of a monoclonal murine IgG antibody and the major allergen from birch pollen Bet v 1
    • Mirza O., et al. Dominant epitopes and allergic cross-reactivity: complex formation between a Fab fragment of a monoclonal murine IgG antibody and the major allergen from birch pollen Bet v 1. J. Immunol. 165 (2000) 331-785
    • (2000) J. Immunol. , vol.165 , pp. 331-785
    • Mirza, O.1
  • 32
    • 60649084396 scopus 로고    scopus 로고
    • Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis
    • 10.1186/1471-2105-9-538
    • Huang Y.X., et al. Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis. BMC Bioinform. 9 (2008) 538 10.1186/1471-2105-9-538
    • (2008) BMC Bioinform. , vol.9 , pp. 538
    • Huang, Y.X.1


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