Automatic design of DNA logic gates based on kinetic simulation

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 5877 LNCS, Issue , 2009, Pages 88-96

  Kawamata, Ibuki ^a   Tanaka, Fumiaki ^a   Hagiya, Masami ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ANNEALING METHODS; AUTOMATIC DESIGN; BASE PAIRING; BRANCH MIGRATION; COMPLEX SYSTEMS; DNA MOLECULES; EVALUATION FUNCTION; KINETIC MODELS; KINETIC SIMULATION; REACTION SYSTEM; SOLUTION SPACE; TIME CHANGE; TRIAL AND ERROR;

CALCULATIONS; COMPUTER SCIENCE; DNA; GENES; GENETIC PROGRAMMING; LOGIC GATES; PLASMA SIMULATION; SIMULATED ANNEALING; SIMULATORS;

NUCLEIC ACIDS;

EID: 71449124315     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-10604-0_9     Document Type: Conference Paper

References (5)

1. Seelig, G., Soloveichik, D., Zhang, D.Y., Winfree, E.: Enzyme-free nucleic acid logic circuits. Science 314(5805), 1585-1588 (2006)
2. Zhang, D.Y., Turberfield, A.J., Yurke, B., Winfree, E.: Engineering entropy-driven reactions and networks catalyzed by DNA. Science 318(5853), 1121-1125 (2007)
3. Yin, P., Choi, H.M.T., Calvert, C.R., Pierce, N.A.: Programming biomolecular self-assembly pathways. Nature 451(7176), 318-322 (2008)
4. Qian, L., Winfree, E.: A simple dna gate motif for synthesizing large-scale circuits. In: Proceedings of 14th International Meeting on DNA Computing (DNA14), pp. 139-151 (2008)
5. Seelig, G., Yurke, B., Winfree, E.: Catalyzed relaxation of a metastable DNA fuel. Journal of the American Chemical Society 128(37), 12211-12220 (2006)