Molecular characterization of Japanese indigenous grape cultivar 'Koshu' (Vitis vinifera) leaf and berry skin during grape development

Plant Biotechnology Reports

Volumn 3, Issue 3, 2009, Pages 225-241

  Kobayashi, Hironori ^a,b   Fujita, Keiko ^a   Suzuki, Shunji ^a   Takayanagi, Tsutomu ^a  

^a UNIVERSITY OF YAMANASHI   (Japan)

^b MERCIAN CORPORATION   (Japan)

Author keywords

Berry skin; Gene expression; Grape leaf; Koshu; Ripening; Vitis vinifera

Indexed keywords

VITACEAE; VITIS; VITIS VINIFERA;

EID: 71449123793     PISSN: 18635466     EISSN: 18635474     Source Type: Journal    
DOI: 10.1007/s11816-009-0095-6     Document Type: Article

References (46)

1. Ari'Izumi K, Suzuki Y, Kato I, Yagi Y, Otsuka K, Sato M (1994) Winemaking from Koshu variety by the sur lie method: change in the content of nitrogen compounds. Am J Enol Vitic 45: 312-318.
2. Bak S, Tax FE, Feldmann KA, Galbraith DW, Feyereisen R (2001) CYP83B1, a cytochrome P450 at the metabolic branch point in auxin and indole glucosinolate biosynthesis in Arabidopsis. Plant Cell 13: 101-111.
3. Baranowski JD, Negel CW (1981) Isolation and identification of the hydrocinnamic acid derivatives in white Riesling wine. Am J Enol Vitic 32: 5-13.
4. Boss PK, Davies C, Robinson SP (1996) Analysis of the expression of anthocyanin pathway genes in developing Vitis vinifera L. cv Shiraz grape berries and the implications for pathway regulation. Plant Physiol 111: 1059-1066.
5. Castellarin SD, Gaspero GD, Marconi R, Nonis A, Peterlunger E, Paillard S, Adam-Blondon AF, Testolin R (2006) Colour variation in red grapevines (Vitis vinifera L.): genomic organisation, expression of flavonoid 3′-hydroxylase, flavonoid 3′, 5′-hydroxylase genes and related metabolite profiling of red cyanidin-/blue delphinidin-based anthocyanins in berry skin. BMC Genomics 7: 12.
6. Castellarin SD, Matthews MA, Gaspero GD, Gambetta GA (2007) Water deficits accelerate ripening and induce changes in gene expression regulating flavonoid biosynthesis in grape berry. Planta 227: 101-112.
7. Cawthon DL, Morris JR (1982) Relationship of seed number and maturity to berry development, fruit maturation, hormonal changes and uneven ripening of "Concord" (Vitislabrusca L.) grapes. J Am Soc Hortic Sci 107: 1097-1104.
8. Chang S, Puryear J, Cairney J (1993) A simple and efficient method for isolating RNA from pine trees. Plant Mol Biol Rep 11: 113-116.
9. Chervin C, Terrier N, Ageorges A, Ribes F, Kuapunyakoon T (2006) Influence of ethylene on sucrose accumulation in grape berry. Am J Enol Vitic 57: 511-513.
10. Costantini E, Landi L, Silvestroni O, Pandolfini T, Spena A, Mezzetti B (2007) Auxin synthesis-encoding transgene enhances grape fecundity. Plant Physiol 143: 1689-1694.
11. Cramer GR, Ergül A, Grimplet J, Tillett RL, Tattersall EAR, Bohlman MC, Vincent D, Sonderegger J, Evans J, Osborne C, Quilici D, Schlauch KA, Schooley DA, Cushman JC (2007) Water and salinity stress in grapevine: early and late changes in transcript and metabolite profiles. Funct Integr Genomics 7: 111-134.
12. da Silva FG, Iandolino A, Ai-Kayal F, Bohlman MC, Cushman MA, Lim H, Ergul A, Figueroa R, Kabuloglu EK, Osborne C, Rowe J, Tattersall E, Leslie A, Xu J, Baek J, Cramer GR, Cushman JC, Cook DR (2005) Characterizing the grape transcriptome. Analysis of expressed sequence tags from multiple Vitis species and development of a compendium of gene expression during berry development. Plant Physiol 139: 574-597.
13. Davies C, Robinson SP (1996) Sugar accumulation in grape berries. Cloning of two putative vacuolar invertase cDNAs and their expression in grapevine tissues. Plant Physiol 111: 275-283.
14. Davies C, Robinson SP (2000) Differential screening indicates a dramatic change in mRNA profiles during grape berry ripening. Cloning and characterization of cDNAs encoding putative cell wall and stress response proteins. Plant Physiol 122: 803-812.
15. Deluc LG, Grimplet J, Wheatley MD, Tillett RL, Quilici DR, Osborne C, Schooley DA, Schlauch KA, Cushman JC, Cramer GR (2007) Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development. BMC Genomics 8: 429.
16. Deluc L, Bogs J, Walker AR, Ferrier T, Decendit A, Merillon JM, Robinson SP, Barrieu F (2008) The transcriptional factor VvMYB5b contributes to the regulation of anthocyanin and proanthocyanidin biosynthesis in developing grape berries. Plant Physiol 147: 2041-2053.
17. Fernandez L, Torregrosa L, Terrier N, Sreekantan L, Grimplet J, Davies C, Thomas MR, Romieu C, Ageorges A (2007) Identification of genes associated with flesh morphogenesis during grapevine fruit development. Plant Mol Biol 63: 307-323.
18. Fleming AJ, McQueen-Manson S, Mandel T, Kuhlemeier C (1997) Induction of leaf primordia by the cell wall protein expansin. Science 276: 1415-1418.
19. Fukushima T, Hamada Y, Yamada H, Horii I (2007) Change of micro-RNA expression in rat liver treated by acetaminophen or carbon tetrachloride: regulating role of micro-RNA for RNA expression. J Toxicol Sci 32: 401-407.
20. Fung RW, Qui W, Su Y, Schachtman DP, Huppert K, Fekete C, Kovács LG (2007) Gene expression variation in grapevine species Vitis vinifera L. and Vitis aestivalis Michx. Genetic Resour Crop Evol 54: 1541-1553.
21. Goto-Yamamoto N (2000) Phenetic clustering of grape (Vitis ssp.) by AFLP analysis. Breed Sci 50: 53-57.
22. Grimplet J, Deluc LG, Tillett RL, Wheatley MD, Schlauch KA, Cramer GR, Cushman JC (2007) Tissue-specific mRNA expression profiling in grape berry tissues. BMC Genomics 8: 187.
23. Herrick IW, Nagel CW (1985) The caffeoyl tartrate content of white Riesling wines from California, Washington, and Alsace. Am J Enol Vitic 36: 95-97.
24. Holzapfel B, Treeby M (2007) Effect of timing and rate of N supply on leaf nitrogen status, grape yield and juice composition from Shiraz grapevines grafted to one of three different rootstocks. Aust J Grape Wine Res 13: 14-22.
25. Kepinski S, Leyser O (2004) Auxin-induced SCFTIR1-Aux/IAA interaction involves stable modification of the SCFTIR1 complex. Proc Natl Acad Sci USA 101: 12381-12386.
26. Kepinski S, Leyser O (2005) The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 435: 446-451.
27. Kobayashi S, Ishimura M, Ding CK, Yakushiji H, Goto N (2001) Comparison of UDP-glucose: flavonoid 3-O-glucosyltransferase (UFGT) gene sequences between white grapes (Vitis vinifera) and their sports with red skin. Plant Sci 160: 543-550.
28. Kobayashi S, Ishimura M, Hanaoka K, Honda C (2002) Myb-related genes of the Kyoho grapes (Vitislabruscana) regulate anthocyanin biosynthesis. Planta 215: 924-933.
29. Kutz A, Müller A, Henning P, Kaiser WM, Piotrowski M, Weiler EW (2002) A role for nitrilase 3 in the regulation of root morphology in sulphur-starving Arabidopsis thaliana. Plant J 30: 95-106.
30. Liu RH, Nguyen T, Schwarzkopf K, Fuji HS, Petrova A, Suida T, Peyvan K, Bizak M, Danley D, McShea A (2006) Fully integrated miniature device for automated gene expression DNA microarray processing. Anal Chem 78: 1980-1986.
31. Maggu M, Winz R, Kilmartin PA, Trought MC, Nicolau L (2007) Effect of skin contact and pressure on the composition of Sauvignon Blanc must. J Agric Food Chem 55: 10281-10288.
32. Mori K, Goto-Yamamoto N, Kitayama M, Hashizume K (2007) Effect of high temperature on anthocyanin composition and transcription of flavonoid hydroxylase genes in 'Pinot noir' grapes (Vitisvinifera). J Hortic Sci Biotechnol 82: 199-206.
33. Murat ML, Tominaga T, Dubourdieu D (2001) Assessing the aromatic potential of Cabernet Sauvignon and Merlot musts used to produce rose wine by assaying the cysteinylated precursor of 3-mercaptohexan-1-ol. J Agric Food Chem 49: 5412-5417.
34. Nittler MP, Hoking-Murray D, Foo CK, Sil A (2005) Identification of Histoplasmacapsulatum transcripts induced in response to reactive nitrogen species. Mol Biol Cell 16: 4792-4813.
35. Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: 2003-2007.
36. Reid KE, Olsson N, Schlosser J, Peng F, Lund ST (2006) An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol 6: 27-37.
37. Rhodes DR, Yu J, Shanker K, Deshpande N, Varambally R, Ghosh D, Barrette T, Pandey A, Chinnaiyan AM (2004) Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proc Natl Acad Sci USA 101: 9309-9314.
38. Ribéreau-Gayon P, Stonestreet E (1965) Determination of anthocyanins in red wine. Bull Soc Chim Fr 9: 2649-2652.
39. Terrier N, Ageorges A, Abbal P, Romieu C (2001) Generation of ESTs from grape berry at various developmental stages. J Plant Physiol 158: 1575-1583.
40. Terrier N, Glissant D, Grimplet J, Barrieu F, Abbal P, Couture C, Ageorges A, Atanassova R, Léon C, Renaudin JP, Dédaldéchamp F, Romieu C, Delrot S, Hamdi S (2005) Isogene specific oligo array reveal multifaceted changes in gene expression during grape berry (Vitis vinifera L.) development. Planta 222: 832-847.
41. Tesniere C, Vayda ME (1991) Method for the isolation of high-quality RNA from grape berry tissues without contaminating tannins or carbohydrates. Plant Mol Biol Rep 9: 242-251.
42. Wang XD, Bohlscheid JC, Edwards CG (2003) Fermentative activity and production of volatile compounds by Saccharomyces grown in synthetic grape juice media deficient in assimilable nitrogen and/or pantothenic acid. J Appl Microbiol 94: 349-359.
43. Waters DL, Holton TA, Ablett EM, Lee LS, Henry RJ (2005) cDNA microarray analysis of developing grape (Vitis vinifera cv. Shiraz) berry skin. Funct Integr Genomics 5: 40-58.
44. Yokotsuka K (1995) Wine quality and phenolic compounds. Nippon Shokuhin Kagaku Kogaku Kaishi 42: 288-297.
45. Zapata C, Deléens E, Chaillou S, Magné C (2004) Partitioning and mobilization of starch and N reserves in grapevine (Vitisvinifera L.). J Plant Physiol 161: 1031-1040.
46. Zhao Y, Christensen SK, Fankhauser C, Cashman JR, Cohen JD, Weigel D, Chory J (2001) A role for flavin monooxygenase-like enzymes in auxin biosynthesis. Science 291: 306-309.