Comparability of Microarray data between amplified and non amplified RNA in colorectal carcinoma

Journal of Biomedicine and Biotechnology

Volumn 2009, Issue , 2009, Pages

  Croner, Roland S ^a   Lausen, Berthold ^b   Schellerer, Vera ^a   Zeittraeger, Isabel ^a   Wein, Axel ^a   Schildberg, Claus ^a   Papadopoulos, Thomas ^a   Dimmler, Arno ^a   Hahn, Eckhart G ^a   Hohenberger, Werner ^a   Brueckl, Wolfgang M ^a  

^a UNIVERSITY OF ERLANGEN NUREMBERG   (Germany)

^b UNIVERSITY OF ESSEX   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ARTICLE; COLORECTAL CANCER; COMPARATIVE STUDY; CONTROLLED STUDY; DNA MICROARRAY; GENE EXPRESSION PROFILING; HUMAN; HUMAN TISSUE; NUCLEOTIDE SEQUENCE; REPRODUCIBILITY; RNA HYBRIDIZATION; UNINDEXED SEQUENCE; CANCER STAGING; CARCINOMA; CLUSTER ANALYSIS; COLORECTAL TUMOR; GENETICS; METABOLISM; METHODOLOGY; MICRODISSECTION; NUCLEIC ACID AMPLIFICATION; NUCLEIC ACID HYBRIDIZATION;

CARCINOMA; CLUSTER ANALYSIS; COLORECTAL NEOPLASMS; GENE EXPRESSION PROFILING; HUMANS; MICRODISSECTION; NEOPLASM STAGING; NUCLEIC ACID AMPLIFICATION TECHNIQUES; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRODUCIBILITY OF RESULTS; RNA, NEOPLASM;

EID: 71149119135     PISSN: 11107243     EISSN: 11107251     Source Type: Journal    
DOI: 10.1155/2009/837170     Document Type: Article

References (24)

1. Bueno-de-Mesquita J. M., van Harten W. H., Retel V. P., Use of 70-gene signature to predict prognosis of patients with node-negative breast cancer: a prospective community-based feasibility study (RASTER) Lancet Oncology 2007 8 12 1079 1087
2. Kim S.-Y., Kim J.-H., Lee H.-S., Meta- and gene set analysis of stomach cancer gene expression data Molecules and Cells 2007 24 2 200 209
3. Greenawalt D. M., Duong C., Smyth G. K., Gene expression profiling of esophageal cancer: comparative analysis of Barretts esophagus, adenocarcinoma, and squamous cell carcinoma International Journal of Cancer 2007 120 9 1914 1921
4. Croner R. S., Peters A., Brueckl W. M., Microarray versus conventional prediction of lymph node metastasis in colorectal carcinoma Cancer 2005 104 2 395 404
5. Croner R. S., Foertsch T., Brueckl W. M., Common denominator genes that distinguish colorectal carcinoma from normal mucosa International Journal of Colorectal Disease 2005 20 4 353 362
6. Ghadimi B. M., Grade M., Difilippantonio M. J., Effectiveness of gene expression profiling for response prediction of rectal adenocarcinomas to preoperative chemoradiotherapy Journal of Clinical Oncology 2005 23 9 1826 1838
7. Frederiksen C. M., Knudsen S., Laurberg S., rntoft T. F., Classification of Dukes B and C colorectal cancers using expression arrays Journal of Cancer Research and Clinical Oncology 2003 129 5 263 271
8. Wang Y., Jatkoe T., Zhang Y., Gene expression profiles and molecular markers to predict recurrence of Dukes B colon cancer Journal of Clinical Oncology 2004 22 9 1564 1571
9. Croner R. S., Guenther K., Foertsch T., Tissue preparation for gene expression profiling of colorectal carinoma: three alternatives to laser microdissection with preamplification Journal of Laboratory and Clinical Medicine 2004 143 6 344 351
10. Nachamkin I., Panaro N. J., Li M., Agilent 2100 bioanalyzer for restriction fragment length polymorphism analysis of the Campylobacter jejuni flagellin gene Journal of Clinical Microbiology 2001 39 2 754 757
11. Hsiao L. L., Dangond F., Yoshida T., A compendium of gene expression in normal human tissues Physiol Genomics 2001 7 2 97 104
12. Croner R. S., Frtsch T., Brckl W. M., Molecular signature for lymphatic metastasis in colorectal carcinomas Annals of Surgery 2008 247 5 803 810
13. Notterman D. A., Alon U., Sierk A. J., Levine A. J., Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays Cancer Research 2001 61 7 3124 3130
14. Groene J., Mansmann U., Meister R., Transcriptional census of 36 microdissected colorectal cancers yields a gene signature to distinguish UICC II and III International Journal of Cancer 2006 119 8 1829 1836
15. Grade M., Hormann P., Becker S., Gene expression profiling reveals a massive, aneuploidy-dependent transcriptional deregulation and distinct differences between lymph node-negative and lymph node-positive colon carcinomas Cancer Research 2007 67 1 41 56
16. Van Gelder R. N., von Zastrow M. E., Yool A., Dement W. C., Barchas J. D., Eberwine J. H., Amplified RNA synthesized from limited quantities of heterogeneous cDNA Proceedings of the National Academy of Sciences of the United States of America 1990 87 5 1663 1667
17. Wadenbck J., Clapham D. H., Craig D., Comparison of standard exponential and linear techniques to amplify small cDNA samples for microarrays BMC Genomics 2005 6 1, article 61
18. Wilhelm J., Muyal J. P., Best J., Systematic comparison of the T7-IVT and SMART-based RNA preamplification techniques for DNA microarray experiments Clinical Chemistry 2006 52 6 1161 1167
19. Schneider J., Bune A., Huber W., Systematic analysis of T7 RNA polymerase based in vitro linear RNA amplification for use in microarray experiments BMC Genomics 2004 5 1, article 29
20. Notterman D. A., Alon U., Sierk A. J., Levine A. J., Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays Cancer Research 2001 61 7 3124 3130
21. Brueckl W. M., Ballhausen W. G., Frtsch T., Genetic testing for germline mutations of the APC gene in patients with apparently sporadic desmoid tumors but a family history of colorectal carcinoma Diseases of the Colon and Rectum 2005 48 6 1275 1281
22. Gmeiner W. H., Hellmann G. M., Shen P., Tissue-dependent and -independent gene expression changes in metastatic colon cancer Oncology Reports 2008 19 1 245 251
23. Wiese A. H., Auer J., Lassmann S., Identification of gene signatures for invasive colorectal tumor cells Cancer Detection and Prevention 2007 31 4 282 295
24. Lin Y.-H., Friederichs J., Black M. A., Multiple gene expression classifiers from different array platforms predict poor prognosis of colorectal cancer Clinical Cancer Research 2007 13 2, part 1 498 507