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Volumn 4, Issue 11, 2009, Pages

A genome-wide analysis of array-based comparative genomic hybridization (CGH) data to detect intra-species variations and evolutionary relationships

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPARATIVE GENOMIC HYBRIDIZATION; CONTROLLED STUDY; GENE STRUCTURE; GENETIC VARIABILITY; HUMAN; MATHEMATICAL COMPUTING; MOLECULAR EVOLUTION; NONHUMAN; PHENOTYPE; QUANTITATIVE ANALYSIS; SPECIES DIFFERENCE; ALGORITHM; ANIMAL; CATTLE; COMPUTER SIMULATION; FEMALE; GENETIC ASSOCIATION; GENOME; MALE; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 71049191935     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0007978     Document Type: Article
Times cited : (14)

References (32)
  • 1
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • The International HapMap C
    • The International HapMap C (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature 449: 851-861.
    • (2007) Nature , vol.449 , pp. 851-861
  • 2
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • The International HapMap C
    • The International HapMap C (2005) A haplotype map of the human genome. Nature 437: 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 4
    • 22144458387 scopus 로고    scopus 로고
    • Denoising array-based comparative genomic hybridization data using wavelets
    • Hsu L, Self SG, Grove D, Randolph T, Wang K, et al. (2005) Denoising array-based comparative genomic hybridization data using wavelets. Biostatistics 6: 211-226.
    • (2005) Biostatistics , vol.6 , pp. 211-226
    • Hsu, L.1    Self, S.G.2    Grove, D.3    Randolph, T.4    Wang, K.5
  • 5
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • Olshen AB, Venkatraman ES, Lucito R, Wigler M (2004) Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 5: 557-572.
    • (2004) Biostatistics , vol.5 , pp. 557-572
    • Olshen, A.B.1    Venkatraman, E.S.2    Lucito, R.3    Wigler, M.4
  • 6
    • 34147104969 scopus 로고    scopus 로고
    • A faster circular binary segmentation algorithm for the analysis of array CGH data
    • Venkatraman ES, Olshen AB (2007) A faster circular binary segmentation algorithm for the analysis of array CGH data. Bioinformatics 23: 657-663.
    • (2007) Bioinformatics , vol.23 , pp. 657-663
    • Venkatraman, E.S.1    Olshen, A.B.2
  • 7
    • 37249032736 scopus 로고    scopus 로고
    • Spatial smoothing and hot spot detection for CGH data using the fused lasso
    • Tibshirani R, Wang P (2008) Spatial smoothing and hot spot detection for CGH data using the fused lasso. Biostatistics 9: 18-29.
    • (2008) Biostatistics , vol.9 , pp. 18-29
    • Tibshirani, R.1    Wang, P.2
  • 8
    • 61449105740 scopus 로고    scopus 로고
    • MSB: A mean-shift-based approach for the analysis of structural variation in the genome
    • Wang LY, Abyzov A, Korbel JO, Snyder M, Gerstein M (2009) MSB: a mean-shift-based approach for the analysis of structural variation in the genome. Genome Res 19: 106-117.
    • (2009) Genome Res , vol.19 , pp. 106-117
    • Wang, L.Y.1    Abyzov, A.2    Korbel, J.O.3    Snyder, M.4    Gerstein, M.5
  • 10
    • 9244229940 scopus 로고    scopus 로고
    • Hidden Markov models approach to the analysis of array CGH data
    • Fridlyand J, et al. (2004) Hidden Markov models approach to the analysis of array CGH data. J Mult Anal 90: 132-153.
    • (2004) J Mult Anal , vol.90 , pp. 132-153
    • Fridlyand, J.1
  • 11
    • 34247181241 scopus 로고    scopus 로고
    • Exploiting noise in array CGH data to improve detection of DNA copy number change
    • Hu J, Gao JB, Cao Y, Bottinger E, Zhang W (2007) Exploiting noise in array CGH data to improve detection of DNA copy number change. Nucleic Acids Res 35: e35.
    • (2007) Nucleic Acids Res , vol.35
    • Hu, J.1    Gao, J.B.2    Cao, Y.3    Bottinger, E.4    Zhang, W.5
  • 12
    • 27544483495 scopus 로고    scopus 로고
    • Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
    • Lai WR, Johnson MD, Kucherlapati R, Park PJ (2005) Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data. Bioinformatics 21: 3763-3770.
    • (2005) Bioinformatics , vol.21 , pp. 3763-3770
    • Lai, W.R.1    Johnson, M.D.2    Kucherlapati, R.3    Park, P.J.4
  • 13
    • 34250886537 scopus 로고    scopus 로고
    • Evolution: Reducible complexity - the case for bacterial flagella
    • Doolittle WF, Zhaxybayeva O (2007) Evolution: reducible complexity - the case for bacterial flagella. Curr Biol 17: R510-512.
    • (2007) Curr Biol , vol.17
    • Doolittle, W.F.1    Zhaxybayeva, O.2
  • 14
    • 38349128272 scopus 로고    scopus 로고
    • Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny
    • Bapteste E, Susko E, Leigh J, Ruiz-Trillo I, Bucknam J, et al. (2008) Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny. Mol Biol Evol 25: 83-91.
    • (2008) Mol Biol Evol , vol.25 , pp. 83-91
    • Bapteste, E.1    Susko, E.2    Leigh, J.3    Ruiz-Trillo, I.4    Bucknam, J.5
  • 15
    • 58149231047 scopus 로고    scopus 로고
    • The impact of reticulate evolution on genome phylogeny
    • Beiko RG, Doolittle WF, Charlebois RL (2008) The impact of reticulate evolution on genome phylogeny. Syst Biol 57: 844-856.
    • (2008) Syst Biol , vol.57 , pp. 844-856
    • Beiko, R.G.1    Doolittle, W.F.2    Charlebois, R.L.3
  • 16
    • 33846978695 scopus 로고    scopus 로고
    • Relative impact of nucleotide and copy number variation on gene expression phenotypes
    • Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, et al. (2007) Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science 315: 848-853.
    • (2007) Science , vol.315 , pp. 848-853
    • Stranger, B.E.1    Forrest, M.S.2    Dunning, M.3    Ingle, C.E.4    Beazley, C.5
  • 17
    • 33751329250 scopus 로고    scopus 로고
    • Global variation in copy number in the human genome
    • Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, et al. (2006) Global variation in copy number in the human genome. Nature 444: 444-454.
    • (2006) Nature , vol.444 , pp. 444-454
    • Redon, R.1    Ishikawa, S.2    Fitch, K.R.3    Feuk, L.4    Perry, G.H.5
  • 18
    • 34250870103 scopus 로고    scopus 로고
    • Song JZ, Duan KM, Ware T, Surette M (2007) The wavelet-based cluster analysis for temporal gene expression data. EURASIP J Bioinform Syst Biol. pp 39382.
    • Song JZ, Duan KM, Ware T, Surette M (2007) The wavelet-based cluster analysis for temporal gene expression data. EURASIP J Bioinform Syst Biol. pp 39382.
  • 19
    • 71049122193 scopus 로고    scopus 로고
    • The identification of functional motifs in temporal gene expression analysis
    • Song JJB, Michael G. Surette (2005) The identification of functional motifs in temporal gene expression analysis. Evolutionary Bioinformatics 1: 84-96.
    • (2005) Evolutionary Bioinformatics , vol.1 , pp. 84-96
    • Song, J.J.B.1    Surette, M.G.2
  • 20
    • 9144268508 scopus 로고    scopus 로고
    • Wavelet to predict bacterial ori and ter: A tendency towards a physical balance
    • Song J, Ware A, Liu SL (2003) Wavelet to predict bacterial ori and ter: a tendency towards a physical balance. BMC Genomics 4: 17.
    • (2003) BMC Genomics , vol.4 , pp. 17
    • Song, J.1    Ware, A.2    Liu, S.L.3
  • 21
    • 33750338211 scopus 로고    scopus 로고
    • Feature selection using Haar wavelet power spectrum
    • Subramani P, Sahu R, Verma S (2006) Feature selection using Haar wavelet power spectrum. BMC Bioinformatics 7: 432.
    • (2006) BMC Bioinformatics , vol.7 , pp. 432
    • Subramani, P.1    Sahu, R.2    Verma, S.3
  • 22
    • 0029843085 scopus 로고    scopus 로고
    • Exact t and F Tests for Analyzing Studies with Multiple Endpoints
    • Lauter J (1996) Exact t and F Tests for Analyzing Studies with Multiple Endpoints. Biometrics 52: 964-970.
    • (1996) Biometrics , vol.52 , pp. 964-970
    • Lauter, J.1
  • 23
    • 33746493901 scopus 로고    scopus 로고
    • A geographically explicit genetic model of worldwide human-settlement history
    • Liu H, Prugnolle F, Manica A, Balloux F (2006) A geographically explicit genetic model of worldwide human-settlement history. Am J Hum Genet 79: 230-237.
    • (2006) Am J Hum Genet , vol.79 , pp. 230-237
    • Liu, H.1    Prugnolle, F.2    Manica, A.3    Balloux, F.4
  • 24
    • 35948991932 scopus 로고    scopus 로고
    • Copy number variants and common disorders: Filling the gaps and exploring complexity in genome-wide association studies
    • Estivill X, Armengol L (2007) Copy number variants and common disorders: filling the gaps and exploring complexity in genome-wide association studies. PLoS Genet 3: 1787-1799.
    • (2007) PLoS Genet , vol.3 , pp. 1787-1799
    • Estivill, X.1    Armengol, L.2
  • 27
    • 34248664072 scopus 로고    scopus 로고
    • Enhancement of time-frequency properties of ECG for detecting micropotentials by wavelet transform based method
    • Tirtom H, Engin M, Engin EZ (2008) Enhancement of time-frequency properties of ECG for detecting micropotentials by wavelet transform based method. Expert Systems with Applications 34: 746-753.
    • (2008) Expert Systems with Applications , vol.34 , pp. 746-753
    • Tirtom, H.1    Engin, M.2    Engin, E.Z.3
  • 28
    • 34247282081 scopus 로고    scopus 로고
    • Frequency modulation between low- and high-frequency components of the heart rate variability spectrum
    • Zhong Y, Jan K-M, Chon KH (2006) Frequency modulation between low- and high-frequency components of the heart rate variability spectrum. Biomedizinische Technik/Biomedical Engineering 51: 251.
    • (2006) Biomedizinische Technik/Biomedical Engineering , vol.51 , pp. 251
    • Zhong, Y.1    Jan, K.-M.2    Chon, K.H.3
  • 29
    • 58249092389 scopus 로고    scopus 로고
    • A wavelet-based energetic approach for the analysis of biomedical signals: Application to the electroencephalogram and electro-oculogram
    • Corrected Proof, In Press
    • Magosso E, Ursino M, Zaniboni A, Gardella E A wavelet-based energetic approach for the analysis of biomedical signals: Application to the electroencephalogram and electro-oculogram. Applied Mathematics and Computation In Press, Corrected Proof.
    • Applied Mathematics and Computation
    • Magosso, E.1    Ursino, M.2    Zaniboni, A.3    Gardella, E.4
  • 30
    • 71049165404 scopus 로고    scopus 로고
    • Song JZ, Duan KM, Surette M (2005) The Wavelet Transformation for Temporal Gene Expression Analysis. Proceedings of the 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05) - Workshops - 03: IEEE Computer Society.
    • Song JZ, Duan KM, Surette M (2005) The Wavelet Transformation for Temporal Gene Expression Analysis. Proceedings of the 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05) - Workshops - Volume 03: IEEE Computer Society.
  • 32
    • 60849136924 scopus 로고    scopus 로고
    • Principal component tests: Applied to temporal gene expression data
    • Zhang W, Fang HB, Song J (2009) Principal component tests: applied to temporal gene expression data. BMC Bioinformatics 10 Suppl 1: S26.
    • (2009) BMC Bioinformatics , vol.10 , Issue.SUPPL. 1
    • Zhang, W.1    Fang, H.B.2    Song, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.