-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
-
2
-
-
0040366266
-
Adhesion of Acinetobacter venetianus to diesel fuel droplets studied with in situ electrochemical and molecular probes
-
Baldi F., Ivosevic N., Minacci A., Pepi M., Fani R., Svetlicic V., et al. Adhesion of Acinetobacter venetianus to diesel fuel droplets studied with in situ electrochemical and molecular probes. Appl. Environ. Microbiol. 65 (1999) 2041-2048
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 2041-2048
-
-
Baldi, F.1
Ivosevic, N.2
Minacci, A.3
Pepi, M.4
Fani, R.5
Svetlicic, V.6
-
3
-
-
0034016917
-
Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH-sorbing carriers
-
Bastiaens L., Springael D., Wattiau P., Harms H., DeWachter R., Verachtert H., et al. Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH-sorbing carriers. Appl. Environ. Microbiol. 66 (2000) 1834-1843
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 1834-1843
-
-
Bastiaens, L.1
Springael, D.2
Wattiau, P.3
Harms, H.4
DeWachter, R.5
Verachtert, H.6
-
4
-
-
0034802295
-
Evidence for interfacial uptake in hexadecane degradation by Rhodococcus equi: the importance of cell flocculation
-
Bouchez-Naitali M., Blanchet D., Bardin V., and Vandecasteele J.-P. Evidence for interfacial uptake in hexadecane degradation by Rhodococcus equi: the importance of cell flocculation. Microbiology 147 (2001) 2537-2543
-
(2001)
Microbiology
, vol.147
, pp. 2537-2543
-
-
Bouchez-Naitali, M.1
Blanchet, D.2
Bardin, V.3
Vandecasteele, J.-P.4
-
5
-
-
0029893052
-
Mechanism of microbial utilization of biphenyl sorbed to polyacrylic beads
-
Calvillo Y.M., and Alexander M. Mechanism of microbial utilization of biphenyl sorbed to polyacrylic beads. Appl. Microbiol. Biotechnol. 45 (1996) 383-390
-
(1996)
Appl. Microbiol. Biotechnol.
, vol.45
, pp. 383-390
-
-
Calvillo, Y.M.1
Alexander, M.2
-
6
-
-
34248385250
-
Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir
-
Feng L., Wang W., Cheng J., Ren Y., Zhao G., Gao C., et al. Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. Proc. Natl. Acad. Sci. U.S.A. 104 (2007) 5602-5607
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 5602-5607
-
-
Feng, L.1
Wang, W.2
Cheng, J.3
Ren, Y.4
Zhao, G.5
Gao, C.6
-
7
-
-
48449086943
-
The bacterial type VI secretion machine: yet another player for protein transport across membranes
-
Filloux A., Hachani A., and Bleves S. The bacterial type VI secretion machine: yet another player for protein transport across membranes. Microbiology 154 (2008) 1570-1583
-
(2008)
Microbiology
, vol.154
, pp. 1570-1583
-
-
Filloux, A.1
Hachani, A.2
Bleves, S.3
-
8
-
-
0026688315
-
Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium
-
Gauthier M.J., Lafay B., Christen R., Fernandez L., Acquaviva M., Bonin P., et al. Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium. Int. J. Syst. Bacteriol. 42 (1992) 568-576
-
(1992)
Int. J. Syst. Bacteriol.
, vol.42
, pp. 568-576
-
-
Gauthier, M.J.1
Lafay, B.2
Christen, R.3
Fernandez, L.4
Acquaviva, M.5
Bonin, P.6
-
9
-
-
0035989562
-
Oleiphilaceae fam. nov., to include Oleiphilus messinensis gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons
-
Golyshin P.N., Chernikova T.N., Abraham W.-R., Lünsdorf H., Timmis K.N., and Yakimov M.M. Oleiphilaceae fam. nov., to include Oleiphilus messinensis gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons. Int. J. Syst. Evol. Microbiol. 52 (2002) 901-911
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 901-911
-
-
Golyshin, P.N.1
Chernikova, T.N.2
Abraham, W.-R.3
Lünsdorf, H.4
Timmis, K.N.5
Yakimov, M.M.6
-
10
-
-
0028816582
-
Bioavailability of sorbed 3-chlorodibenzofuran
-
Harms H., and Zehnder A.J.B. Bioavailability of sorbed 3-chlorodibenzofuran. Appl. Environ. Microbiol. 61 (1995) 27-33
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 27-33
-
-
Harms, H.1
Zehnder, A.J.B.2
-
11
-
-
0036208369
-
Statistical analysis of Pseudomonas aeruginosa biofilm development: impact of mutations in genes involved in twitching motility, cell-to-cell signaling, and stationary-phase sigma factor expression
-
Heydorn A., Ersbøll B., Kato J., Hentzer M., Parsek M.R., Tolker-Nielsen T., et al. Statistical analysis of Pseudomonas aeruginosa biofilm development: impact of mutations in genes involved in twitching motility, cell-to-cell signaling, and stationary-phase sigma factor expression. Appl. Environ. Microbiol. 68 (2002) 2008-2017
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 2008-2017
-
-
Heydorn, A.1
Ersbøll, B.2
Kato, J.3
Hentzer, M.4
Parsek, M.R.5
Tolker-Nielsen, T.6
-
12
-
-
1642496893
-
Evaluation of bacterial strategies to promote the bioavailability of polycyclic aromatic hydrocarbons
-
Johnsen A.R., and Karlson U. Evaluation of bacterial strategies to promote the bioavailability of polycyclic aromatic hydrocarbons. Appl. Microbiol. Biotechnol. 63 (2004) 452-459
-
(2004)
Appl. Microbiol. Biotechnol.
, vol.63
, pp. 452-459
-
-
Johnsen, A.R.1
Karlson, U.2
-
13
-
-
16644396090
-
Principles of microbial PAH-degradation in soil
-
Johnsen A.R., Wick L.Y., and Harms H. Principles of microbial PAH-degradation in soil. Environ. Pollut. 133 (2005) 71-84
-
(2005)
Environ. Pollut.
, vol.133
, pp. 71-84
-
-
Johnsen, A.R.1
Wick, L.Y.2
Harms, H.3
-
14
-
-
0033975879
-
Characterization and role of tbuX in utilization of toluene by Ralstonia pickettii PKO1
-
Kahng H.Y., Byrne A.M., Olsen R.H., and Kukor J.J. Characterization and role of tbuX in utilization of toluene by Ralstonia pickettii PKO1. J. Bacteriol. 182 (2000) 1232-1242
-
(2000)
J. Bacteriol.
, vol.182
, pp. 1232-1242
-
-
Kahng, H.Y.1
Byrne, A.M.2
Olsen, R.H.3
Kukor, J.J.4
-
15
-
-
39749201900
-
Cytoplasmic wax ester accumulation during biofilm-driven substrate assimilation at the alkane-water interface by Marinobacter hydrocarbonoclasticus SP17
-
Klein B., Grossi V., Bouriat P., Goulas P., and Grimaud R. Cytoplasmic wax ester accumulation during biofilm-driven substrate assimilation at the alkane-water interface by Marinobacter hydrocarbonoclasticus SP17. Res. Microbiol. 159 (2008) 137-144
-
(2008)
Res. Microbiol.
, vol.159
, pp. 137-144
-
-
Klein, B.1
Grossi, V.2
Bouriat, P.3
Goulas, P.4
Grimaud, R.5
-
16
-
-
0013894468
-
The role and control of the glyoxylate cycle in Escherichia coli
-
Kornberg H.L. The role and control of the glyoxylate cycle in Escherichia coli. Biochem. J. 99 (1966) 1-11
-
(1966)
Biochem. J.
, vol.99
, pp. 1-11
-
-
Kornberg, H.L.1
-
17
-
-
58149203237
-
CDD: specific functional annotation with the conserved domain database
-
Marchler-Bauer A., Anderson J.B., Chitsaz F., Derbyshire M.K., Deweese-Scott C., Fong J.H., et al. CDD: specific functional annotation with the conserved domain database. Nucleic Acids Res. 37 (2009) D205-D210
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Chitsaz, F.3
Derbyshire, M.K.4
Deweese-Scott, C.5
Fong, J.H.6
-
18
-
-
33846033400
-
CDD: a conserved domain database for interactive domain family analysis
-
Marchler-Bauer A., Anderson J.B., Derbyshire M.K., DeWeese-Scott C., Gonzales N.R., Gwadz M., et al. CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35 (2007) D237-D240
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Derbyshire, M.K.3
DeWeese-Scott, C.4
Gonzales, N.R.5
Gwadz, M.6
-
19
-
-
0031715241
-
Effect of biofilm formation by Pseudomonas 8909N on the bioavailability of solid naphthalene
-
Mulder H., Breure A.M., Van Honschooten D., Grotenhuis J.T.C., Van Andel J.G., and Rulkens W.H. Effect of biofilm formation by Pseudomonas 8909N on the bioavailability of solid naphthalene. Appl. Microbiol. Biotechnol. 50 (1998) 277-283
-
(1998)
Appl. Microbiol. Biotechnol.
, vol.50
, pp. 277-283
-
-
Mulder, H.1
Breure, A.M.2
Van Honschooten, D.3
Grotenhuis, J.T.C.4
Van Andel, J.G.5
Rulkens, W.H.6
-
20
-
-
0031724115
-
Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development
-
O'Toole G.A., and Kolter R. Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development. Mol. Microbiol. 30 (1998) 295-304
-
(1998)
Mol. Microbiol.
, vol.30
, pp. 295-304
-
-
O'Toole, G.A.1
Kolter, R.2
-
21
-
-
60149111839
-
Pili in Gram-negative and Gram-positive bacteria - structure, assembly and their role in disease
-
Proft T., and Baker E.N. Pili in Gram-negative and Gram-positive bacteria - structure, assembly and their role in disease. Cell. Mol. Life Sci. 66 (2009) 613-635
-
(2009)
Cell. Mol. Life Sci.
, vol.66
, pp. 613-635
-
-
Proft, T.1
Baker, E.N.2
-
22
-
-
3242890783
-
Use of proteomics to identify novel virulence determinants that are required for Edwardsiella tarda pathogenesis
-
Rao P.S., Yamada Y., Tan Y.P., and Leung K.Y. Use of proteomics to identify novel virulence determinants that are required for Edwardsiella tarda pathogenesis. Mol. Microbiol. 53 (2004) 573-586
-
(2004)
Mol. Microbiol.
, vol.53
, pp. 573-586
-
-
Rao, P.S.1
Yamada, Y.2
Tan, Y.P.3
Leung, K.Y.4
-
23
-
-
20344405225
-
Fluorene and phenanthrene uptake by Pseudomonas putida ATCC 17514: kinetics and physiological aspects
-
Rodrigues A.C., Wuertz S., Brito A.G., and Melo L.F. Fluorene and phenanthrene uptake by Pseudomonas putida ATCC 17514: kinetics and physiological aspects. Biotechnol. Bioeng. 90 (2005) 281-289
-
(2005)
Biotechnol. Bioeng.
, vol.90
, pp. 281-289
-
-
Rodrigues, A.C.1
Wuertz, S.2
Brito, A.G.3
Melo, L.F.4
-
24
-
-
33744762185
-
Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization
-
Sabirova J.S., Ferrer M., Regenhardt D., Timmis K.N., and Golyshin P.N. Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization. J. Bacteriol. 188 (2006) 3763-3773
-
(2006)
J. Bacteriol.
, vol.188
, pp. 3763-3773
-
-
Sabirova, J.S.1
Ferrer, M.2
Regenhardt, D.3
Timmis, K.N.4
Golyshin, P.N.5
-
25
-
-
0037198693
-
A component of innate immunity prevents bacterial biofilm development
-
Singh P.K., Parsek M.R., Greenberg E.P., and Welsh M.J. A component of innate immunity prevents bacterial biofilm development. Nature 417 (2002) 552-555
-
(2002)
Nature
, vol.417
, pp. 552-555
-
-
Singh, P.K.1
Parsek, M.R.2
Greenberg, E.P.3
Welsh, M.J.4
-
26
-
-
4544338671
-
Effects of hydrocarbon structure on fatty acid, fatty alcohol, and beta-hydroxy acid composition in the hydrocarbon-degrading bacterium Marinobacter hydrocarbonoclasticus
-
Soltani M., Metzger P., and Largeau C. Effects of hydrocarbon structure on fatty acid, fatty alcohol, and beta-hydroxy acid composition in the hydrocarbon-degrading bacterium Marinobacter hydrocarbonoclasticus. Lipids 39 (2004) 491-505
-
(2004)
Lipids
, vol.39
, pp. 491-505
-
-
Soltani, M.1
Metzger, P.2
Largeau, C.3
-
27
-
-
0036001073
-
Enrichment versus biofilm culture: a functional and phylogenetic comparison of polycyclic aromatic hydrocarbon-degrading microbial communities
-
Stach J.E., and Burns R.G. Enrichment versus biofilm culture: a functional and phylogenetic comparison of polycyclic aromatic hydrocarbon-degrading microbial communities. Environ. Microbiol. 4 (2002) 169-182
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 169-182
-
-
Stach, J.E.1
Burns, R.G.2
-
29
-
-
60849116153
-
Protein secretion systems in bacterial-host associations, and their description in the gene ontology
-
1-9
-
Tseng T.-T., Tyler B.M., and Setubal J.C. Protein secretion systems in bacterial-host associations, and their description in the gene ontology. BMC Microbiol. 9 Suppl. 1 (2009) S2 1-9
-
(2009)
BMC Microbiol.
, vol.9
, Issue.SUPPL. 1
-
-
Tseng, T.-T.1
Tyler, B.M.2
Setubal, J.C.3
-
32
-
-
0028924094
-
Identification of a membrane protein and a truncated LysR-type regulator associated with the toluene degradation pathway in Pseudomonas putida F1
-
Wang Y., Rawlings M., Gibson D.T., Labbe D., Bergeron H., Brousseau R., et al. Identification of a membrane protein and a truncated LysR-type regulator associated with the toluene degradation pathway in Pseudomonas putida F1. Mol. Gen. Genet. 246 (1995) 570-579
-
(1995)
Mol. Gen. Genet.
, vol.246
, pp. 570-579
-
-
Wang, Y.1
Rawlings, M.2
Gibson, D.T.3
Labbe, D.4
Bergeron, H.5
Brousseau, R.6
-
33
-
-
0035950145
-
Gene expression in Pseudomonas aeruginosa biofilms
-
Whiteley M., Bangera M.G., Bumgarner R.E., Parsek M.R., Teitzel G.M., Lory S., et al. Gene expression in Pseudomonas aeruginosa biofilms. Nature 413 (2001) 860-864
-
(2001)
Nature
, vol.413
, pp. 860-864
-
-
Whiteley, M.1
Bangera, M.G.2
Bumgarner, R.E.3
Parsek, M.R.4
Teitzel, G.M.5
Lory, S.6
-
34
-
-
0033009762
-
Physiological adaptations involved in alkane assimilation at a low temperature by Rhodococcus sp. strain Q15
-
Whyte L.G., Slagman S.J., Pietrantonio F., Bourbonniere L., Koval S.F., Lawrence J.R., et al. Physiological adaptations involved in alkane assimilation at a low temperature by Rhodococcus sp. strain Q15. Appl. Environ. Microbiol. 65 (1999) 2961-2968
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 2961-2968
-
-
Whyte, L.G.1
Slagman, S.J.2
Pietrantonio, F.3
Bourbonniere, L.4
Koval, S.F.5
Lawrence, J.R.6
-
35
-
-
10444260518
-
Isolation and characterization of a novel sphingomonad capable of growth with chrysene as sole carbon and energy source
-
Willison J.C. Isolation and characterization of a novel sphingomonad capable of growth with chrysene as sole carbon and energy source. FEMS Microbiol. Lett. 241 (2004) 143-150
-
(2004)
FEMS Microbiol. Lett.
, vol.241
, pp. 143-150
-
-
Willison, J.C.1
|