Is Persea (Lauraceae) monophyletic? evidence from nuclear ribosomal ITS sequences

Taxon

Volumn 58, Issue 4, 2009, Pages 1153-1167

  Rohwer, Jens G ^a   Li, Jie ^b   Rudolph, Barbara ^a   Schmidt, Sabrina A ^a   van der Werff, Henk ^c   Li, Hsi Wen ^b  

^a UNIVERSITY OF HAMBURG   (Germany)

^b CHINESE ACADEMY OF SCIENCES   (China)

^c MISSOURI BOTANICAL GARDEN   (United States)

Author keywords

ITS; Lauraceae; Neotropics; Paleotropics; Persea group; Phylogeny

Indexed keywords

CLADISTICS; DICOTYLEDON; GENOME; NEOTROPICAL REGION; PALEOTROPICAL KINGDOM; PHYLOGENY; TRICHOME;

ALSEODAPHNE; APOLLONIAS BARBUJANA; DEHAASIA; LAURACEAE; MACHILUS; MAGNOLIOPHYTA; PERSEA; PERSEA AMERICANA; PERSEA INDICA;

EID: 71049178212     PISSN: 00400262     EISSN: None     Source Type: Journal    
DOI: 10.1002/tax.584009     Document Type: Article

References (60)

1. Bentham, G. 1880. Laurineae. Pp. 146-168 in: Bentham, G. & Hooker, J.D. (eds.), Genera Plantarum, vol. 3. Lovell Reeve & Co., Williams & Norgate, London.
2. Beyra-Matos, A. & Lavin, M. 1999. A monograph of Pictetia (Leguminosae-Papilionoideae) and review of the Aeschynomeneae. Syst. Bot. Monogr. 56: 1-93.
3. Buckler, E.S., 4th & Holtsford, T.P. 1996. Zea systematics: ribosomal ITS evidence. Molec. Biol. Evol. 13: 612-622.
4. Buckler, E.S., Ippolito, A. & Holtsford, T.P. 1997. The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145: 821-832.
5. Chanderbali, A.S. 2004. Endlicheria (Lauraceae). Flora Neotropica Monographs 91. New York Botanical Garden Press, Bronx.
6. Chanderbali, A.S., van der Werff, H. & Renner, S.S. 2001. Phylogeny and historical biogeography of Lauraceae: evidence from the chloroplast and nuclear genomes. Ann. Missouri Bot. Gard. 88: 104-134.
7. Crane, P.R., Friis, E.M. & Pedersen, K.R. 1994. Palaeobotanical evidence on the early radiation of magnoliid angiosperms. Pl. Syst. Evol., Suppl. 8: 51-72.
8. Doyle, J.J. & Doyle, J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
9. Drinnan, A.N., Crane, P.R., Friis, E.M. & Pedersen, K.R. 1990. Lauraceous flowers from the Potomac Group (mid-Cretaceous) of eastern North America. Bot. Gaz. 151: 370-384.
10. Eklund, H. 2000. Lauraceous flowers from the Late Cretaceous of North Carolina, U.S.A. Bot. J. Linn. Soc. 132: 397-428.
11. Eklund, H. & Kvaček, J. 1998. Lauraceous inflorescences and flowers from the Cenomanian of Bohemia (Czech Republic, Central Europe). Int. J. Pl. Sci. 159: 668-686.
12. Groth, K. 2003. Molecular Systematic Studies on the Genus Cinnamomum Schaeffer (Lauraceae). Diploma thesis, University of Hamburg, Hamburg.
13. Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41: 95-98.
14. Herendeen, P.S., Crepet, W.L. & Nixon, K.C. 1994. Fossil flowers and pollen of Lauraceae from the Upper Cretaceous of New Jersey. Pl. Syst. Evol. 189: 29-40.
15. Hilu, K.W. & Liang, H. 1997. The matK gene: sequence variation and application in plant systematics. Amer. J. Bot. 84: 830-839.
16. Huelsenbeck, J.P. & Ronquist, F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
17. Johnson, L.A. & Soltis, D.E. 1994. MatK DNA sequences and phylogenetic reconstruction in Saxifragaceae s. str. Syst. Bot. 19: 143-156.
18. Johnson, L.A. & Soltis, D.E. 1995. Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences. Ann. Missouri Bot. Gard. 82: 149-175.
19. Käss, E. & Wink, M. 1997. Phylogenetic relationships in the Papilionoideae (family Leguminosae) based on nucleotide sequences of cpDNA (rbcL) and ncDNA (ITS 1 and 2). Molec. Phylog. Evol. 8: 65-88.
20. Kopp, L.E. 1966. A taxonomic revision of the genus Persea in the Western Hemisphere (Perseae-Lauraceae). Mem. New York Bot. Gard. 14: 1-120.
21. Kostermans, A.J.G.H. 1957. Lauraceae. Pengum. Balai Besar Penjel. Kehut. Indonesia 57: 1-64.
22. Kostermans, A.J.G.H. 1961. The new world species of Cinnamomum Trew (Lauraceae). Reinwardtia 6: 17-24.
23. Kostermans, A.J.G.H. 1962. The Asiatic species of Persea Mill. (Lauraceae). Reinwardtia 6: 189-194.
24. Kostermans, A.J.G.H. 1964. Bibliographia Lauracearum. Archipel, Bogor.
25. Kostermans, A.J.G.H. 1973a. A synopsis of Alseodaphne Nees (Lauraceae). Candollea 28: 93-136.
26. Kostermans, A.J.G.H. 1973b. A synopsis of the genus Dehaasia Bl. (Lauraceae). Bot. Jahrb. Syst. 93: 424-480.
27. Kostermans, A.J.G.H. 1974. A monograph of Caryodaphnopsis A. Shaw. Reinwardtia 9: 123-137.
28. Kostermans, A.J.G.H. 1993. Mutisiopersea Kostermans, a new genus in Lauraceae. Rheedea 3: 132-135.
29. Li, H.W., Pai, P.Y., Lee, S.K., Wei, F.N., Wei, Y.T., Yang, Y.C., Huang, P.H., Tsui, H.P., Shia, Z.D. & Li, J.L. 1984. Lauraceae. Pp. 1-463 in: Li, H.W. (ed.), Flora Reipublicae Popularis Sinicae, vol. 31. Science Press, Beijing.
30. Li, J. & Christophel, D.C. 2000. Systematic relationships within the Litsea complex (Lauraceae): a cladistic analysis on the basis of morphological and leaf cuticle data. Austral. Syst. Bot. 13: 1-13.
31. Li, J., Christophel, D.C., Conran, J.G. & Li, H.W. 2004. Phylogenetic relationships within the 'core' Laureae (Litsea complex, Lauraceae) inferred from sequences of the chloroplast gene matK and nuclear ribosomal DNA ITS regions. Pl. Syst. Evol. 246: 19-34.
32. Mai, D.H. 1971. Über fossile Lauraceae und Theaceae in Mitteleuropa. Feddes Repert. 82: 313-341.
33. Meissner, C.F. 1864. Lauraceae. Pp. 1-260 in: Candolle, A.P. de (ed.), Prodromus Systematis Universalis Regni Vegetabilis, vol. 15 (1). Fortin, Masson et soc., Paris.
34. Mez, C. 1889. Lauraceae Americanae. Gebrüder Borntraeger, Berlin.
35. Moore, L.A. & Willson, M.F. 1982. The effect of microhabitat, spatial distribution, and display size on dispersal of Lindera benzoin by avian frugivores. Canad. J. Bot. 60: 557-660.
36. Mort, M.E., Soltis, P.S., Soltis, D.E. & Mabry, M.L. 2000. Comparison of three methods for estimating internal support on phylogenetic trees. Syst. Biol. 49: 160-171.
37. Pax, F. 1889. Lauraceae. Pp. 106-126 in: Engler, A. & Prantl, K. (eds.), Die natürlichen Pflanzenfamilien, vol. 3, 2. Engelmann, Leipzig.
38. Poole, I., Richter, H.G. & Francis, J.E. 2000. Evidence for Gondwanan origins for Sassafras (Lauraceae)? Late Cretaceous fossil wood of Antarctica. I.A.W.A. Journal 21: 463-475.
39. Rohwer, J.G. 1986. Prodromus einer Monographie der Gattung Ocotea Aubl. (Lauraceae), sensu lato. Mitt. Inst. Allg. Bot. Hamburg 20: 3-278.
40. Rohwer, J.G. 1991. Borderline cases between Ocotea, Nectandra, and Phoebe (Lauraceae): the "marginal" species of the Ocotea helicterifolia-group, including the O. heydeanagroup. Bot. Jahrb. Syst. 112: 365-397.
41. Rohwer, J.G. 1993. Lauraceae. Pp. 366-391 in: Kubitzki K., Rohwer, J.G. & Bittrich, V. (eds.), The Families and Genera of Vascular Plants, vol. 2. Springer, Berlin.
42. Rohwer, J.G. 2000. Toward a phylogenetic classification of the Lauraceae: evidence from matK sequences. Syst. Bot. 25: 60-71.
43. Rohwer, J.G., Richter, H.G. & van der Werff, H. 1991. Two new genera of neotropical Lauraceae and critical remarks on the generic delimitation. Ann. Missouri Bot. Gard. 78: 388-400.
44. Rohwer, J.G. & Rudolph, B. 2005. Jumping genera: the phylogenetic positions of Cassytha, Hypodaphnis, and Neocinnamomum (Lauraceae) based on different analyses of trnK intron sequences. Ann. Missouri Bot. Gard. 92: 153-178.
45. Ronquist, F. & Huelsenbeck, J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
46. Schmincke, H.-U. 1976. The geology of the Canary Islands. Pp. 67-184 in: Kunkel, G. (ed.), Biogeography and Ecology in the Canary Islands. Monographiae Biologicae 30. W. Junk, Den Haag.
47. Snow, D.W. 1981. Tropical frugivorous birds and their food plants: a world survey. Biotropica 13: 1-14.
48. Soltis, D.E., Mavrodiev, E.V., Doyle, J.J., Rauscher, J. & Soltis, P.S. 2008. ITS and ETS sequence data and phylogeny reconstruction in allopolyploids and hybrids. Syst. Bot. 33: 7-20.
49. Steele, K.P. & Vilgalys, R. 1994. Phylogenetic analyses of Polemoniaceae using nucleotide sequences of the plastid gene matK. Syst. Bot. 19: 126-142.
50. Sworfford, D.L. 2001. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4.0b10. Sinauer, Sunderland.
51. Takahashi, M., Crane, P. R. & Ando, H. 1999. Fossil flowers and associated plant fossils from the Kamikitaba locality (Ashizawa formation, Futaba group, Lower Coniacian, Upper Cretaceous) of Northeast Japan. J. Pl. Res. 112: 187-206.
52. Taylor, D.W. 1988. Eocene floral evidence of Lauraceae: corroboration of the North American megafossil record. Amer. J. Bot. 75: 948-957.
53. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
54. Van der Werff, H. 1989. A new species of Persea (Lauraceae) from Surinam, with a discussion of its position within the genus. Ann. Missouri Bot. Gard. 76: 939-941.
55. Van der Werff, H. 1994. Novelties in Neotropical Lauraceae. Novon 4: 58-76.
56. Van der Werff, H. 2001. An annotated key to the genera of Lauraceae in the Flora Malesiana region. Blumea 46: 125-140.
57. Van der Werff, H. 2002. A synopsis of Persea (Lauraceae) in Central America. Novon 12: 575-586.
58. Van der Werff, H. & Richter, H.G. 1996. Toward an improved classification of Lauraceae. Ann. Missouri Bot. Gard. 83: 409-418.
59. Wheelwright, N.T., Haber, W.A., Murray, K.G. & Guidon, C. 1984. Tropical fruit-eating birds and their food plants: a survey of a Costa Rican lower montane forest. Biotropica 16: 173-192.
60. White, T.J., Bruns, T., Lee, S. & Taylor, J.W. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 315-322 in: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (eds.), PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego.