Helicobacter urease: Niche construction at the single molecule level

Journal of Biosciences

Volumn 34, Issue 4, 2009, Pages 503-511

  Khan, Shahid ^a,b   Karim, Asim ^a   Iqbal, Shaheryar ^a  

^a LAHORE UNIVERSITY OF MANAGEMENT SCIENCES   (Pakistan)

^b Molecular Biology Consortium   (United States)

Author keywords

Acid resistance; Bacterial patrogenesis; Structural genomics

Indexed keywords

UREA; UREASE;

AMMONIA; BACTERIUM; ENZYME ACTIVITY; GENOMICS; HOST-PATHOGEN INTERACTION; MOLECULAR ANALYSIS; PATHOGENICITY; PH; THREE-DIMENSIONAL MODELING;

ARTICLE; BACTERIAL COLONIZATION; BACTERIAL GENOME; BACTERIAL VIRULENCE; CELL MOTILITY; CHEMOTAXIS; CRYSTAL STRUCTURE; ECOLOGICAL NICHE; ENZYME STRUCTURE; ESCHERICHIA COLI; GENETIC SELECTION; HELICOBACTER; HELICOBACTER HEPATICUS; HELICOBACTER PYLORI; HOMEOSTASIS; HUMAN; NONHUMAN; PROTEIN EXPRESSION; STOMACH ACID; STOMACH PH;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CRYSTALLOGRAPHY, X-RAY; ESCHERICHIA COLI; GENOME, BACTERIAL; HELICOBACTER PYLORI; HOMEOSTASIS; HYDROGEN-ION CONCENTRATION; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; SUBSTRATE SPECIFICITY; UREA; UREASE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; HELICOBACTER; HELICOBACTER PYLORI;

EID: 70849098474     PISSN: 02505991     EISSN: 02505991     Source Type: Journal    
DOI: 10.1007/s12038-009-0069-4     Document Type: Article

References (37)

1. C. Belzer J. Stoof C. S. Beckwith E. J. Kuipers J. G. Kusters H. M. van Vliet 2005 Differential regulation of urease activity in Helicobacter hepaticus and Helicobacter pylori Microbiology 151 3989 3995 10.1099/mic.0.28188-0 1:CAS:528:DC%2BD28Xhslygtg%3D%3D 16339943 (Pubitemid 41829978)
2. S. Benini W. R. Rypniewski K. S. Wilson S. Miletti S. Ciurli S. Mangani 2000 The complex of Bacillus pasteurii urease with acetohydroxamate anion from X-ray data at 1.55 A resolution J. Biol. Inorg. Chem. 5 110 118 10.1007/s007750050014 1:CAS:528:DC%2BD3cXitVykurw%3D 10766443
3. F. R. Blattner G. Plunkett 3rd C. A. Bloch N. T. Perna V. Burland M. Riley J. Collado-vides J. D. Glasner, et al. 1997 The complete genome sequence of Escherichia coli K-12 Science 277 1453 1474 10.1126/science.277.5331.1453 1:CAS:528:DyaK2sXlvVGnu78%3D 9278503 (Pubitemid 27449228)
4. S. Bury-Mone S. Skouloubris A. Labiqne H. De Reuse 2001 UreI: a Helicobacter pylori protein essential for resistance to acidity and for the early steps of murine gastric mucosa infection Gastroenterol. Clin. Biol. 25 659 663 1:STN:280:DC%2BD3Mrms1CqsQ%3D%3D 11673732
5. S. Bury-Mone J. M. Thiberge M. Contreras A. Maitournam A. Labiqne H. De Reuse 2004 Responsiveness to acidity via metal ion regulators mediates virulence in the gastric pathogen Helicobacter pylori Mol. Microbiol. 53 623 638 10.1111/j.1365-2958.2004.04137.x 1:CAS:528:DC%2BD2cXmt1agsrc%3D 15228539 (Pubitemid 38998180)
6. M. A. Croxen G. Sisson R. Melano P. S. Hoffman 2006 The Helicobacter pylori chemotaxis receptor TlpB (HP0103) is required for pH taxis and for colonization of the gastric mucosa J. Bacteriol. 188 2656 2665 10.1128/JB.188.7.2656-2665.2006 1:CAS:528:DC%2BD28XjtVamsr8%3D 16547053
7. C. Dian K. Schauer U. Kapp S. M. McSweeny A. Labigne L. Terradot 2006 Structural basis of the nickel response in Helicobacter pylori: crystal structures of HpNikR in Apo and nickel-bound states J. Mol. Biol. 361 715 730 10.1016/j.jmb.2006.06.058 1:CAS:528:DC%2BD28XotV2ktbw%3D 16872629 (Pubitemid 44175384)
8. M. Eppinger C. Baar B. Linz G. Raddatz C. Lanz H. Keller G. Morelli H. Gressmann M. Achtman S. C. Schuster 2006 Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines PLoS Genet. 2 e120 10.1371/journal.pgen.0020120 16789826 (Pubitemid 44147413)
9. F. D. Ernst S. Bereswill B. Waidner J. Stoof U. Mader J. G. Kusters E. J. Kuipers M. Kist A. H. van Vliet G. Homuth 2005 Transcriptional profiling of Helicobacter pylori Fur- and ironregulated gene expression Microbiology 151 533 546 10.1099/mic.0.27404-0 1:CAS:528:DC%2BD2MXhs1Kgtbk%3D 15699202 (Pubitemid 40277756)
10. F. D. Ernst J. Stoof W. M. Horrevoets E. J. Kuipers J. G. Kusters A. H. M. van Vliet 2006 NikR mediates nickel-responsive transcriptional repression of the Helicobacter pylori outer membrane proteins FecA3 (HP1400) and FrpB4 (HP1512) Infect. Immun. 74 6821 6828 10.1128/IAI.01196-06 1:CAS:528: DC%2BD28XhtlWgs7nJ 17015456 (Pubitemid 44913157)
11. H. Gressmann B. Linz R. Ghai K.-P. Pleissner R. Schlapbach Y. Yamaoka C. Kraft S. Suerbaum, et al. 2005 Gain and loss of multiple genes during the evolution of Helicobacter pylori PLoS Genet. 1 e43 10.1371/journal.pgen.0010043 16217547
12. N. C. Ha S. T. Oh J. Y. Sung K. A. Cha M. H. Lee B. H. Oh 2001 Supramolecular assembly and acid resistance of Helicobacter pylori urease Nat. Struct. Biol. 8 505 509 10.1038/88563 1:CAS:528:DC%2BD3MXktFalu7g%3D 11373617 (Pubitemid 32525008)
13. D. Hofreuter R. Haas 2002 Characterization of two cryptic Helicobacter pylori plasmids: a putative source for horizontal gene transfer and gene shuffling J. Bacteriol. 184 2755 2766 10.1128/JB.184.10.2755-2766.2002 1:CAS:528:DC%2BD38XjtlGqurg%3D 11976306 (Pubitemid 34457043)
14. D. A. Israel N. Salama U. Krishna U. M. Rieger J. C. Atherton S. Falkow R. M. J. Peek 2001 Helicobacter pylori genetic diversity within the gastric niche of a single human host Proc. Natl. Acad. Sci. USA 98 14625 14630 10.1073/pnas.251551698 1:CAS:528:DC%2BD3MXptFCksLk%3D 11724955 (Pubitemid 33121442)
15. A. Karnholz C. Hoefler S. Odenbreit W. Fischer D. Fofreuter R. Hass 2006 Functional and topological characterization of novel components of the comB DNA transformation competence system in Helicobacter pylori J. Bacteriol. 188 882 893 10.1128/JB.188.3.882-893.2006 1:CAS:528:DC%2BD28XhtVOisro%3D 16428391 (Pubitemid 43146403)
16. F. Kauser M. A. Hussain I. Ahmed S. Srinivas S. M. Devi A. A. Majeed K. R. Rao A. A. Khan L. A. Sechi N. Ahmed 2005 Comparative genomics of Helicobacter pylori isolates recovered from ulcer disease patients in England BMC Microbiol. 5 32 10.1186/1471-2180-5-32 15916705 (Pubitemid 41074305)
17. C. Kraft A. Stack C. Josenhans E. Niehus G. Dietrich P. Correa T. G. Fox D. Falush S. Suerbaum 2006 Genomic changes during chronic Helicobacter pylori infection J. Bacteriol. 188 249 254 10.1128/JB.188.1.249-254.2006 1:CAS:528:DC%2BD28XksFWrurc%3D 16352841
18. J. G. Kusters A. H. M. van Vliet E. K. Lio[ers 2006 Pathogenesis of Helicobacter pylori infection Clin. Microbiol. Rev. 19 449 490 10.1128/CMR.00054-05 1:CAS:528:DC%2BD28XosVaqsrg%3D 16847081 (Pubitemid 44134306)
19. + conductance of Streptococcus lactis J. Bacteriol. 140 197 205 1:CAS:528:DyaL3cXivFyj 40951
20. A. Marais G. L. Mendz S. L. Hazell F. Mégraud 1999 Metabolism and genetics of Helicobacter pylori: the genome era Microbiol. Mol. Biol. Rev. 63 642 674 1:CAS:528:DyaK1MXmt1CgsLs%3D 10477311
21. V. M. Markowitz F. Korzeniewski K. Palaniappan E. Szeto G. Werner A. Padki X. Zhao I. Dubchak, et al. 2006 The integrated microbial genomes (IMG) system Nucleic Acids Res. 34 D344 D348 10.1093/nar/gkj024 1:CAS:528: DC%2BD28XisFOgug%3D%3D 16381883
22. D. J. McGee C. Coker T. L. Tsterman J. M. Harro S. V. Gibson H. L. T. Mobley 2002 The Helicobacter pylori flbA flagellar biosynthesis and regulatory gene is required for motility and virulence and modulates urease of H. pylori and Proteus mirabilis J. Med. Microbiol. 51 958 970 1:CAS:528: DC%2BD38Xps1Kntrk%3D 12448680
23. C. C. McGowan T. L. Cover M. J. Blaser 1997 Analysis of F1F0-ATPase from Helicobacter pylori Infect. Immun. 65 2640 2647 1:CAS:528:DyaK2sXktVymurk%3D 9199431
24. H. L. Mobley M. D. Island R. P. Hausinger 1995 Molecular biology of microbial ureases Microbiol. Rev. 59 451 480 1:CAS:528:DyaK2MXot1Sjurk%3D 7565414
25. F. Musiani E. Arnofi R. Casadio S. Ciurli 2001 Structure-based computational study of the catalytic and inhibition mechanisms of urease J. Biol. Inorg. Chem. 6 300 314 10.1007/s007750000204 1:CAS:528: DC%2BD3MXjtVehtbk%3D 11315566 (Pubitemid 32825512)
26. J. D. Oh S. M. Karam J. I. Gordon 2005 Intracellular Helicobacter pylori in gastric epithelial progenitors Proc. Natl. Acad. Sci. USA 102 5186 5191 10.1073/pnas.0407657102 1:CAS:528:DC%2BD2MXjsFemtbo%3D 15795379
27. J. D. Oh H. Kling-Backhed M. Giannakis J. Xu R. S. Fulton H. S. Cordom C. Wang G. Elliott, et al. 2006 The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression Proc. Natl. Acad. Sci. USA 103 9999 10004 10.1073/pnas.0603784103 1:CAS:528:DC%2BD28XmvVajur0%3D 16788065 (Pubitemid 43993612)
28. R. J. Owen E. R. Slater J. Xerry T. M. Peters E. L. Teare A. Grant 1998 Development of a scheme for genotyping Helicobacter pylori based on allelic variation in urease subunit genes J. Clin. Microbiol. 36 3710 3712 1:CAS:528:DyaK1cXnvVOms70%3D 9817904
29. N. T. Perna G. Plunkett 3rd V. Burland B. Mau J. D. Glasner D. J. Rose G. F. Mayhew P. S. Evans, et al. 2001 Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 Nature (London) 409 529 533 10.1038/35054089 1:CAS:528:DC%2BD3MXpvVeksA%3D%3D (Pubitemid 32144360)
30. V. Prouzet-Mauleon M. A. Hussain H. Lamouliatte F. Kauser F. Megruad N. Ahmed 2005 Pathogen evolution in vivo: genome dynamics of two isolates obtained 9 years apart from a duodenal ulcer patient infected with a single Helicobacter pylori strain J. Clin. Microbiol. 43 4237 4241 10.1128/JCM.43.8.4237-4241.2005 1:CAS:528:DC%2BD2MXpvVCqsb0%3D 16081988 (Pubitemid 41129737)
31. E. R. Schreiter S. C. Wang D. B. Zamble C. L. Drennan 2006 NikR-operator complex structure and the mechanism of repressor activation by metal ions Proc. Natl. Acad. Sci. USA 103 13676 13681 10.1073/pnas.0606247103 1:CAS:528:DC%2BD28XpvFSmt7c%3D 16945905 (Pubitemid 44413966)
32. J. H. Simmons L. K. Riley C. L. Besch-Williford C. L. Franklin 2000 Helicobacter mesocricetorum sp. nov. A novel Helicobacter isolated from the feces of Syrian hamsters J. Clin. Microbiol. 38 1811 1817 1:CAS:528: DC%2BD3cXjsFegsL8%3D 10790105
33. S. Suerbaum 1995 The complex flagella of gastric Helicobacter species Trends. Microbiol. 3 168 170 10.1016/S0966-842X(00)88913-1 1:STN:280: DyaK2MzltlGrtg%3D%3D 7627454
34. S. Suerbaum C. Josenhans T. Sterzenbach B. Drescher P. Brandt M. Bell M. Droge B. Fartmann, et al. 2003 The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus Proc. Natl. Acad. Sci. USA 100 7901 7906 10.1073/pnas.1332093100 1:CAS:528:DC%2BD3sXlt1Wqtro%3D 12810954 (Pubitemid 36760067)
35. J. F. Tomb O. White A. R. Kerlavage R. A. Clayton G. G. Sutton R. D. Fleischmann K. A. Ketchum H. P. Klenk, et al. 1997 The complete genome sequence of the gastric pathogen Helicobacter pylori Nature (London) 388 539 547 10.1038/41483 1:CAS:528:DyaK2sXlt1artb0%3D (Pubitemid 27339996)
36. M. E. Wand R. E. Sockett K. J. Evans N. Doherty P. M. Sharp K. R. Hardie K. Winzer 2006 Helicobacter pylori FlhB function: the FlhB C-terminal homologue HP1575 acts as a "spare part" to permit flagellar export when the HP0770 FlhBCC domain is deleted J. Bacteriol. 188 7531 7541 10.1128/JB.00263-06 1:CAS:528:DC%2BD28XhtFKjtLfJ 17050924 (Pubitemid 44646252)
37. R. A. Welch V. Burland G. Plunkett 3rd P. Redford P. Roesch D. Rasko E. L. Buckles Lion 2002 Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli Proc. Natl. Acad. Sci. USA 99 17020 17024 10.1073/pnas.252529799 1:CAS:528:DC%2BD3sXhvV2ltA%3D%3D 12471157 (Pubitemid 36034091)