-
1
-
-
69249205522
-
A new computational tool for establishing model parameter identifiability
-
E. August and A. Papachristodoulou, "A new computational tool for establishing model parameter identifiability," Journal of Computational Biology, vol. 16, no. 6, pp. 875-885, 2009.
-
(2009)
Journal of Computational Biology
, vol.16
, Issue.6
, pp. 875-885
-
-
August, E.1
Papachristodoulou, A.2
-
2
-
-
1542375741
-
Optimal identification of biochemical reaction networks
-
X. Feng and H. Rabitz, "Optimal Identification of Biochemical Reaction Networks," Biophysical Journal, vol. 86, pp. 1270-1281, 2004.
-
(2004)
Biophysical Journal
, vol.86
, pp. 1270-1281
-
-
Feng, X.1
Rabitz, H.2
-
3
-
-
34547832608
-
Results towards identifiability properties of biochemical reaction networks
-
San Diego, CA, USA
-
M. Farina, R. Findeisen, E. Bullinger, S. Bittanti, F. Allgöwer, and P. Wellstead, "Results Towards Identifiability Properties of Biochemical Reaction Networks," in Proceedings of the 45th IEEE Conference on Decision & Control, San Diego, CA, USA, 2006, pp. 2104-2109.
-
(2006)
Proceedings of the 45th IEEE Conference on Decision & Control
, pp. 2104-2109
-
-
Farina, M.1
Findeisen, R.2
Bullinger, E.3
Bittanti, S.4
Allgöwer, F.5
Wellstead, P.6
-
4
-
-
70349203852
-
The question of parameter identifiability for biochemical reaction networks considering the NF-?B signal transduction pathway
-
Stuttgart, Germany
-
D. Geffen, R. Findeisen, M. Schliemann, F. Allgöwer, and M. Guay, "The Question of Parameter Identifiability for Biochemical Reaction Networks Considering the NF-?B Signal Transduction Pathway," in Proceedings of Foundations of Systems Biology in Engineering (FOSBE), Stuttgart, Germany, 2007, pp. 504-509.
-
(2007)
Proceedings of Foundations of Systems Biology in Engineering (FOSBE)
, pp. 504-509
-
-
Geffen, D.1
Findeisen, R.2
Schliemann, M.3
Allgöwer, F.4
Guay, M.5
-
5
-
-
0028441801
-
Identifiability and distinguishability of general reaction systems
-
S. Vajda and H. Rabitz, "Identifiability and Distinguishability of General Reaction Systems," J. Phys. Chem., vol. 98, pp. 5265-5271, 1994.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 5265-5271
-
-
Vajda, S.1
Rabitz, H.2
-
6
-
-
0028990876
-
Practical identifiability of a biokinetic model of activated sludge respiration
-
P. A. Vanrolleghem, M. Van Daele, and D. Dochain, "Practical identifiability of a biokinetic model of activated sludge respiration," War. Res., vol. 29, no. 2, pp. 2561-2570, 1995.
-
(1995)
War. Res.
, vol.29
, Issue.2
, pp. 2561-2570
-
-
Vanrolleghem, P.A.1
Daele, M.V.2
Dochain, D.3
-
7
-
-
0031239967
-
Practical identification of unstructured growth kinetics by application of optimal experimental design
-
K. J. Versyck, J. E. Claes, and J. F. Van Impe, "Practical Identification of Unstructured Growth Kinetics by Application of Optimal Experimental Design," Biotechnol. Prog., vol. 13, pp. 524-531, 1997.
-
(1997)
Biotechnol. Prog.
, vol.13
, pp. 524-531
-
-
Versyck, K.J.1
Claes, J.E.2
Impe, J.F.V.3
-
9
-
-
1342286938
-
Simulation methods for optimal experimental design in systems biology
-
D. Faller, U. Klingmüller, and J. Ti, "Simulation Methods for Optimal Experimental Design in Systems Biology," SIMULATION, vol. 79, pp. 717-725, 2003.
-
(2003)
SIMULATION
, vol.79
, pp. 717-725
-
-
Faller, D.1
Klingmüller, U.2
Ti, J.3
-
10
-
-
25444510601
-
Iterative approach to model identification of biological networks
-
K. G. Gadkar, R. Gunawan, and F. J. Doyle III, "Iterative approach to model identification of biological networks," BMC Bioinformatics 2005, vol. 6, p. 155, 2005.
-
(2005)
BMC Bioinformatics 2005
, vol.6
, pp. 155
-
-
Gadkar, K.G.1
Gunawan, R.2
Doyle III, F.J.3
-
11
-
-
0016339217
-
Optimal input signals for parameter estimation in dynamic systems - Survey and new results
-
R. K. Mehra, "Optimal Input Signals for Parameter Estimation in Dynamic Systems - Survey and New Results," IEEE Transactions on Automatic Control, vol. 19, no. 6, pp. 753-768, 1974.
-
(1974)
IEEE Transactions on Automatic Control
, vol.19
, Issue.6
, pp. 753-768
-
-
Mehra, R.K.1
-
12
-
-
0017542851
-
Nonlinear controllability and observability
-
R. Hermann and A. J. Krener, "Nonlinear controllability and observability," IEEE Trans. Automatic Control, vol. AC-22, no. 5, pp. 728-740, 1977.
-
(1977)
IEEE Trans. Automatic Control
, vol.AC-22
, Issue.5
, pp. 728-740
-
-
Hermann, R.1
Krener, A.J.2
-
13
-
-
58249144852
-
-
Trieste, Italy, September 2001 and Bedlewo-Warsaw, Poland, September 2002, laboratoire de Mathématiques INSA de Rouen, France
-
W. Respondek, "Geometry of Static and Dynamic Feedback: Lectures given at the Summer Schools on Mathematical Control Theory, Trieste, Italy, September 2001 and Bedlewo-Warsaw, Poland, September 2002, " 2002, laboratoire de Mathématiques INSA de Rouen, France.
-
(2002)
Geometry of Static and Dynamic Feedback: Lectures Given at the Summer Schools on Mathematical Control Theory
-
-
Respondek, W.1
-
14
-
-
1542275307
-
-
Ph.D. dissertation, Rutgers, The State University of New Jersey, USA
-
M. C. F. Chaves, "Observer Design for a Class of Nonlinear Systems, with Applications to Biochemical Networks," Ph.D. dissertation, Rutgers, The State University of New Jersey, USA, 2003.
-
(2003)
Observer Design for a Class of Nonlinear Systems, with Applications to Biochemical Networks
-
-
Chaves, M.C.F.1
-
16
-
-
0021161825
-
The deterministic identifiability of nonlinear pharmacokinetic models
-
K. R. Godfrey and W. R. Fitch, "The Deterministic Identifiability of Nonlinear Pharmacokinetic Models," Journal of Pharmacokinetics and Biopharmaceutics, vol. 12, no. 2, pp. 177-191, 1984.
-
(1984)
Journal of Pharmacokinetics and Biopharmaceutics
, vol.12
, Issue.2
, pp. 177-191
-
-
Godfrey, K.R.1
Fitch, W.R.2
-
17
-
-
0028375708
-
On global identifiability for arbitrary model parametrizations
-
L. Ljung and T. Glad, "On Global Identifiability for Arbitrary Model Parametrizations," Automatica, vol. 30, no. 2, pp. 265-276, 1994.
-
(1994)
Automatica
, vol.30
, Issue.2
, pp. 265-276
-
-
Ljung, L.1
Glad, T.2
-
18
-
-
0034898663
-
Some effective approaches to check the identifiability of uncontrolled nonlinear systems
-
L. Denis-Vidal, G. Joly-Blanchard, and C. Noiret, "Some effective approaches to check the identifiability of uncontrolled nonlinear systems," Mathematics and Computers in Simulation, vol. 57, pp. 35-44, 2001.
-
(2001)
Mathematics and Computers in Simulation
, vol.57
, pp. 35-44
-
-
Denis-Vidal, L.1
Joly-Blanchard, G.2
Noiret, C.3
-
19
-
-
0035113215
-
Global identifiability of nonlinear models of biological systems
-
S. Audoly, G. Bellu, L. D'Angiò, M. P. Saccomani, and C. Cobelli, "Global Identifiability of Nonlinear Models of Biological Systems," IEEE Trans. Biomedical Engineering, vol. 48, no. 1, pp. 55-65, 2001.
-
(2001)
IEEE Trans. Biomedical Engineering
, vol.48
, Issue.1
, pp. 55-65
-
-
Audoly, S.1
Bellu, G.2
D'Angiò, L.3
Saccomani, M.P.4
Cobelli, C.5
-
20
-
-
1342322973
-
-
Springer Texts in Statistics. New York: Springer-Verlag
-
K. Lange, Optimization, Springer Texts in Statistics. New York: Springer-Verlag, 2004.
-
(2004)
Optimization
-
-
Lange, K.1
-
21
-
-
57349174008
-
Enhancing sparsity by reweighted l1 minimization
-
E. J. Candes, M. B. Wakin, and S. Boyd, "Enhancing Sparsity by Reweighted l1 Minimization," Journal of Fourier Analysis and Applications, vol. 14, no. 5, pp. 877-905, 2008.
-
(2008)
Journal of Fourier Analysis and Applications
, vol.14
, Issue.5
, pp. 877-905
-
-
Candes, E.J.1
Wakin, M.B.2
Boyd, S.3
-
22
-
-
33747848852
-
Advanced methods and algorithms for biological networks analysis
-
H. El-Samad, A. Papachristodoulou, S. Prajna, J. C. Doyle, and M. Khammash, "Advanced methods and algorithms for biological networks analysis," Proceedings of the IEEE, vol. 94, no. 4, pp. 832-853, 2006.
-
(2006)
Proceedings of the IEEE
, vol.94
, Issue.4
, pp. 832-853
-
-
El-Samad, H.1
Papachristodoulou, A.2
Prajna, S.3
Doyle, J.C.4
Khammash, M.5
-
23
-
-
0030106462
-
Semidefinite programming
-
L. Vandenberghe and S. Boyd, "Semidefinite programming," SIAM Review, vol. 38, no. 1, pp. 49-95, 1996.
-
(1996)
SIAM Review
, vol.38
, Issue.1
, pp. 49-95
-
-
Vandenberghe, L.1
Boyd, S.2
-
25
-
-
0023452095
-
Some NP-complete problems in quadratic and nonlinear programming
-
K. G. Murty and S. N. Kabadi, "Some NP-complete problems in quadratic and nonlinear programming," Math. Program., vol. 39, pp. 117-129, 1987.
-
(1987)
Math. Program.
, vol.39
, pp. 117-129
-
-
Murty, K.G.1
Kabadi, S.N.2
-
26
-
-
1542266056
-
Semidefinite programming relaxations for semialgebraic problems
-
P. A. Parrilo, "Semidefinite programming relaxations for semialgebraic problems," Math. Program. Ser. B, vol. 96, pp. 293-320, 2003.
-
(2003)
Math. Program. Ser. B
, vol.96
, pp. 293-320
-
-
Parrilo, P.A.1
-
27
-
-
0013251154
-
-
available at
-
S. Prajna, A. Papachristodoulou, and P. A. Parrilo, "SOSTOOLS - Sum of Squares Optimization Toolbox, User's Guide," 2002, available at http://www.cds.caltech.edu/sostools.
-
(2002)
SOSTOOLS - Sum of Squares Optimization Toolbox, User's Guide
-
-
Prajna, S.1
Papachristodoulou, A.2
Parrilo, P.A.3
-
28
-
-
0033296299
-
Using sedumi 1.02, a MATLAB toolbox for optimization over symmetric cones
-
available at
-
J. F. Sturm, "Using SeDuMi 1.02, a MATLAB toolbox for optimization over symmetric cones." Optimization Methods and Software, vol. 11-12, pp. 625-653, 1999, available at http://sedumi.ie.lehigh.edu.
-
(1999)
Optimization Methods and Software
, vol.11-12
, pp. 625-653
-
-
Sturm, J.F.1
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