Paracoccus chinensis sp. nov., isolated from sediment of a reservoir

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 11, 2009, Pages 2670-2674

  Li, Hai Feng ^a   Qu, Jiang Hang ^a   Yang, Jin Shui ^a   Li, Zhi Jian ^a   Yuan, Hong Li ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM COLONY; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; FATTY ACID ANALYSIS; GENE SEQUENCE; GENETIC SIMILARITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PARACOCCUS; PARACOCCUS ALKENIFER; PARACOCCUS CHINENSIS; PARACOCCUS KOCURII; PARACOCCUS KOREENSIS; PARACOCCUS MARINUS; PARACOCCUS SOLVENTIVORANS; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN CONTENT; RESERVOIR; SEDIMENT; SEQUENCE ANALYSIS;

DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FRESH WATER; MOLECULAR SEQUENCE DATA; PARACOCCUS; PHYLOGENY; RNA, RIBOSOMAL, 16S;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); NEGIBACTERIA; PARACOCCUS (BACTERIUM); PARACOCCUS ALKENIFER; PARACOCCUS KOCURII; PARACOCCUS KOREENSIS; PARACOCCUS SOLVENTIVORANS;

EID: 70450272593     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.004705-0     Document Type: Article

References (25)

1. Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
2. Davis, D. H., Doudoroff, M., Stanier, R. Y. & Mandel, M. (1969). Proposal to reject the genus Hydrogenomonas: taxonomic implications. Int J Syst Bacteriol 19, 375-390.
3. De Ley, J. (1970). Reexamination of the association between melting point, buoyant density, and chemical base composition of deoxyribonucleic acid. J Bacteriol 101, 738-754.
4. Dong, X. Z. & Cai, M. Y. (2001). Determinative Manual for Routine Bacteriology. Beijing: Scientific Press.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Gerhardt, P. & Krieg, N. R. (1981). General characterization. In Manual of Methods for General Bacteriology, pp. 409-443. Edited by N. R. Krieg. Washington, DC: American Society for Microbiology.
7. Harker, M., Hirschberg, J. & Oren, A. (1998). Paracoccus marcusii sp. nov., an orange Gram-negative coccus. Int J Syst Bacteriol 48, 543-548.
8. Hildebrand, D. C., Palleroni, N. J., Hendson, M., Toth, J. & Johnson, J. L. (1994). Pseudomonas flavescens sp. nov., isolated from walnut blight cankers. Int J Syst Bacteriol 44, 410-415.
9. Khan, S. T., Takaichi, S. & Harayama, S. (2008). Paracoccus marinus sp. nov., an adonixanthin diglucoside-producing bacterium isolated fromcoastal seawater in Tokyo Bay. Int J Syst Evol Microbiol 58, 383-386.
10. Kim, B. Y., Weon, H. Y. & Yoo, S. H. (2006). Paracoccus homiensis sp. nov., isolated from a sea-sand sample. Int J Syst Evol Microbiol 56, 2387-2390.
11. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5, 150-163.
12. La, H. J., Im, W. T., Ten, L. N., Kang, M. S., Shin, D. Y. & Lee, S. T. (2005). Paracoccus koreensis sp. nov., isolated from anaerobic granules in an upflow anaerobic sludgeblanket (UASB) reactor. Int J Syst Evol Microbiol 55, 1657-1660.
13. Liu, Z. P., Wang, B. J., Liu, X. Y., Dai, X., Liu, Y. H. & Liu, S. J. (2008). Paracoccus halophilus sp. nov., isolated from marine sediment of the South China Sea, China, and emended description of genus Paracoccus Davis 1969. Int J Syst Evol Microbiol 58, 257-261.
14. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
15. Qu, J. H. & Yuan, H. L. (2008a). Sediminibacterium salmoneum gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from sediment of a eutrophic reservoir. Int J Syst Evol Microbiol 58, 2191-2194.
16. Qu, J. H., Li, H. F., Yang, J. S. & Yuan, H. L. (2008b). Flavobacterium cheniae sp. nov., isolated from sediment of a eutrophic reservoir. Int J Syst Evol Microbiol 58, 2186-2190.
17. Rainey, F. A., Kelly, D. P., Stackbrandt, E., Burghardt, J., Hiraishi, A., Katayama, Y. & Wood, A. (1999). A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov. Int J Syst Bacteriol 49, 645-651.
18. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
20. Siller, H., Fred, A. R., Stackebrandt, E. & Winter, J. (1996). Isolation and characterization of a new Gram-negative, acetone-degrading, nitrate-reducing bacterium from soil, Paracoccus solventivorans sp. nov. Int J Syst Bacteriol 46, 1125-1130.
21. Skerman, V. B. D. (1967). A Guide to the Identification of the Genera of Bacteria, 2nd edn. Baltimore: Williams & Wilkins.
22. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
23. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
24. Urakami, T., Araki, H., Oyanagi, H., Suzuki, K. & Komagata, K. (1990). Paracoccus aminophilus sp. nov. and Paracoccus aminovorans sp. nov., which utilize N,N-dimethylformamide. Int J Syst Bacteriol 40, 287-291.
25. AL emend. Ludwig, Mittenhuber and Friedrich 1993, 366. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), pp. 197-204. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.