Algoriphagus olei sp. nov., isolated from oil-contaminated soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 11, 2009, Pages 2909-2915

  Young, Chiu Chung ^a   Lin, Shi Yao ^a,e   Arun, A B ^a,e   Shen, Fo Ting ^a   Chen, Wen Ming ^b   Rekha, P D ^a,e   Langer, Stefan ^c   Busse, Han Jürgen ^c   Wu, Yun Hsuan ^a   Kämpfer, Peter ^d  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^b NATIONAL KAOHSIUNG UNIVERSITY OF APPLIED SCIENCES   (Taiwan)

^c UNIVERSITY OF VIENNA   (Austria)

^d JUSTUS LIEBIG UNIVERSITY   (Germany)

^e Yenepoya   (India)

Author keywords

[No Author keywords available]

Indexed keywords

MENAQUINONE; PHOSPHATIDYLETHANOLAMINE; RNA 16S; SPERMIDINE;

ALGORIPHAGUS ALKALIPHILUS; ALGORIPHAGUS AQUATILIS; ALGORIPHAGUS BORITOLERANS; ALGORIPHAGUS OLEI; ALGORIPHAGUS ORNITHINIVORANS; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENETIC SIMILARITY; GENOTYPE PHENOTYPE CORRELATION; GRAM NEGATIVE BACTERIUM; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

BACTEROIDETES; DNA, BACTERIAL; DNA, RIBOSOMAL; ENVIRONMENTAL POLLUTION; MOLECULAR SEQUENCE DATA; OILS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL; SOIL MICROBIOLOGY; SOIL POLLUTANTS; TAIWAN;

ALGORIPHAGUS; ALKALIPHILUS; BACTERIA (MICROORGANISMS); NEGIBACTERIA;

EID: 70450242636     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.009415-0     Document Type: Article

References (32)

1. Ahmed, I., Yokota, A. & Fujiwara, T. (2007). Chimaereicella boritolerans sp. nov., a boron-tolerant and alkaliphilic bacterium of the family Flavobacteriaceae isolated from soil. Int J Syst Evol Microbiol 57, 986-992.
2. Altenburger, P., Kämpfer, P., Makristathis, A., Lubitz, W. & Busse, H.-J. (1996). Classification of bacteria isolated from a medieval wall painting. J Biotechnol 47, 39-52.
3. Bowman, J. P., Nichols, C. M. & Gibson, J. A. E. (2003). Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov., Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53, 1343-1355.
4. Buczolits, S., Denner, E. B. M., Vybiral, D., Wieser, M., Kämpfer, P. & Busse, H.-J. (2002). Classification of three airborne bacteria and proposal of Hymenobacter aerophilus sp. nov. Int J Syst Evol Microbiol 52, 445-456.
5. Buczolits, S., Denner, E. B., Kämpfer, P. & Busse, H.-J. (2006). Proposal of Hymenobacter norwichensis sp. nov., classification of 'Taxeobacter ocellatus', 'Taxeobacter gelupurpurascens' and ' Taxeobacter chitinovorans' in the genus Hymenobacter as Hymenobacter ocellatus sp. nov., Hymenobacter gelipurpurascens sp. nov. and Hymenobacter chitinivorans sp. nov., respectively, and emended description of the genus Hymenobacter Hirsch et al. 1999. Int J Syst Evol Microbiol 56, 2071-2078.
6. Busse, H.-J. & Auling, G. (1988). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
7. Chung, Y. C., Kobayashi, T., Kanai, H., Akiba, T. & Kudo, T. (1995). Purification and properties of extracellular amylase from the hyperthermophilic archeon Thermococccus profundus DT5432. Appl Environ Microbiol 61, 1502-1506.
8. Copa-Patiño, J. L., Arenas, M. & Soliveri, J. (2008). Algoriphagus hitonicola sp. nov., isolated from an athalassohaline lagoon. Int J Syst Evol Microbiol 58, 424-428.
9. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
10. Hamana, K. & Nakagawa, Y. (2001). Polyamine distribution profiles in newly validated genera and species within the Flavobacterium-Flexibacter-Cytophaga-Sphingobacterium complex. Microbios 108, 105-118.
11. Kämpfer, P., Steiof, M. & Dott, W. (1991). Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21, 227-251.
12. Kämpfer, P., Dreyer, U., Neef, A., Dott, W. & Busse, H.-J. (2003). Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol 53, 93-97.
13. Kämpfer, P., Lodders, N. & Busse, H.-J. (2009). Arcicella rosea sp. nov., isolated from tap water. Int J Syst Evol Microbiol 59, 341-344.
14. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
15. Liu, Y., Li, H., Jiang, J.-T., Liu, Y.-H., Song, X.-F., Xu, C.-J. & Liu, Z.-P. (2009). Algoriphagus aquatilis sp. nov., isolated from a freshwater lake. Int J Syst Evol Microbiol 59, 1759-1763.
16. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
17. Nedashkovskaya, O. I., Vancanneyt, M., Van Trappen, S., Vandemeulebroecke, K., Lysenko, A. M., Rohde, M., Falsen, E., Frovola, G. M., Mikhailov, V. V. & Swings, J. (2004). Description of Algoriphagus aquimarinus sp. nov., Algoriphagus chordae sp. nov. and Algoriphagus winogradskyi sp. nov., from sea water and algae, transfer of Hoegiella halophila Yi and Chun 2004 to the genus Algoriphagus as Algoriphagus halophilus comb. nov. and emended descriptions of the genera Algoriphagus Bowman et al. 2003 and Hongiella Yi and Chun 2004. Int J Syst Evol Microbiol 54, 1757-1764.
18. Nedashkovskaya, O. I., Kim, S. B., Vancanneyt, M., Lysenko, A. M., Shin, D. S., Park, M. S., Lee, K. H., Jung, W. J., Mikhailov, V. V. & other authors (2006). Echinocola pacifica gen. nov., sp. nov., a novel flexibacterium isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol 56, 953-958.
19. Nedashkovskaya, O. I., Kim, S. B., Kwon, K. K., Shin, D. S., Luo, X., Kim, S.-J. & Mikhailov, V. V. (2007). Proposal of Algoriphagus vanfongensis sp. nov., transfer of members of the genera Hongiella Yi and Chun 2004 emend. Nedahkovskaya et al. 2004 and Chimaereicella Tiago et al. 2006 to the genus Algoriphagus, and emended description of the genus Algoriphagus Bowman et al. 2003 emend. Nedashkovskaya et al. 2004. Int J Syst Evol Microbiol 57, 1988-1994.
20. Stolz, A., Busse, H.-J. & Kämpfer, P. (2007). Pseudomonas knackmussii sp. nov. Int J Syst Evol Microbiol 57, 572-576.
21. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
22. Tiago, I., Mendes, V., Pires, C., Morais, P. V. & Verissimo, A. (2006). Chimaereicella alkaliphila gen. nov., sp. nov., a gram-negative alkaliphilic bacterium isolated from a nonsaline alkaline groundwater. Syst Appl Microbiol 29, 100-108.
23. Tindall, B. J. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
24. Tindall, B. J. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
25. Van Trappen, S., Vandecandelaere, I., Mergaert, J. & Swings, J. (2004). Algoriphagus antarcticus sp. nov., a novel psychrophile from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 54, 1969-1973.
26. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
27. Yi, H. & Chun, J. (2004). Hongiella mannitolivorans gen. nov., sp. nov., Hongiella halophila sp. nov. and Hongiella ornithinivorans sp. nov. isolated from tidal flat sediment. Int J Syst Evol Microbiol 54, 157-162.
28. Yoon, J.-H., Kang, S.-J., Jung, S.-Y., Lee, C.-H. & Oh, T.-K. (2005a). Algoriphagus yeomjeoni sp. nov., isolated from a marine solar saltern in the Yellow Sea, Korea. Int J Syst Evol Microbiol 55, 865-870.
29. Yoon, J.-H., Kang, S.-J. & Oh, T.-K. (2005b). Algoriphagus locisalis sp. nov., isolated from a marine solar saltern. Int J Syst Evol Microbiol 55, 1635-1639.
30. Yoon, J.-H., Lee, M.-H., Kang, S.-J. & Oh, T.-K. (2006). Algoriphagus terrigena sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 777-780.
31. Young, C.-C., Kämpfer, P., Shen, F.-T., Lai, W.-A. & Arun, A. B. (2005). Chryseobacterium formosense sp. nov., isolated from the rhizosphere of Lactuca sativa L. (garden lettuce). Int J Syst Evol Microbiol 55, 423-426.
32. Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179-186.