Polypyrimidine tract binding protein prevents activity of an intronic regulatory element that promotes usage of a composite 3′-terminal exon

Journal of Biological Chemistry

Volumn 284, Issue 47, 2009, Pages 32370-32383

  Anquetil, Vincent ^a   Le Sommer, Caroline ^a,b   Méreau, Agnès ^a   Hamon, Sandra ^a   Lerivray, Hubert ^a   Harby, Serge ^a  

^a UNIVERSITÉ DE RENNES 1   (France)

^b DUKE UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; GENE EXPRESSION; PROTEINS;

ALTERNATIVE SPLICING; DECAY MECHANISMS; EMBRYONIC TISSUE; INTRONIC REGULATORY ELEMENTS; NON-MUSCLE CELLS; POLYPYRIMIDINE TRACT BINDING PROTEINS; STEADY-STATE LEVEL; UNTRANSLATED REGIONS;

MUSCLE;

ALPHA TROPOMYOSIN; MESSENGER RNA; MESSENGER RNA PRECURSOR; POLYPYRIMIDINE TRACT BINDING PROTEIN;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; EMBRYO; ENHANCER REGION; EXON; GENE CONTROL; GENE IDENTIFICATION; MUSCLE CELL; NONHUMAN; PRIORITY JOURNAL; REGULATORY SEQUENCE; RNA SPLICING; RNA TRANSLATION; SEQUENCE ANALYSIS; STEADY STATE; STOP CODON; TERMINAL SEQUENCE; UPSTREAM TERMINAL EXON ENHANCER; XENOPUS;

EID: 70450233524     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.029314     Document Type: Article

References (46)

1. Tian, B., Pan, Z., and Lee, J. Y. (2007) Genome Res. 17, 156-165
2. Yan, J., and Marr, T. G. (2005) Genome Res. 15, 369-375
3. Bartel, D. P. (2009) Cell 136, 215-233
4. Proudfoot, N. J., Furger, A., and Dye, M. J. (2002) Cell 108, 501-512
5. Edwalds-Gilbert, G., Veraldi, K. L., and Milcarek, C. (1997) Nucleic Acids Res. 25, 2547-2561
6. Tian, B., Hu, J., Zhang, H., and Lutz, C. S. (2005) Nucleic Acids Res. 33, 201-212
7. Peterson, M. L. (2007) Immunol. Res. 37, 33-46
8. Peterson, M. L., Gimmi, E. R., and Perry, R. P. (1991) Mol. Cell. Biol. 11, 2324-2327
9. Peterson, M. L. (1994) Mol. Cell. Biol. 14, 7891-7898
10. Seipelt, R. L., Spear, B. T., Snow, E. C., and Peterson, M. L. (1998) Mol. Cell. Biol. 18, 1042-1048
11. Takagaki, Y., Seipelt, R. L., Peterson, M. L., and Manley, J. L. (1996) Cell 87, 941-952
12. Edwalds-Gilbert, G., and Milcarek, C. (1995) Mol. Cell. Biol. 15, 6420-6429
13. Peterson, M. L., Bingham, G. L., and Cowan, C. (2006) Mol. Cell. Biol. 26, 6762-6771
14. Mereau, A., Le Sommer, C., Lerivray, H., Lesimple, M., and Hardy, S. (2007) Biol. Cell 99, 55-65
15. Hardy, S., Hamon, S., Cooper, B., Mohun, T., and Thie'baud, P. (1999) Mech. Dev. 87, 199-202
16. Hardy, S., Fiszman, M. Y., Osborne, H. B., and Thiebaud, P. (1991) Eur. J. Biochem. 202, 431-440
17. Hamon, S., Le Sommer, C., Mereau, A., Allo, M. R., and Hardy, S. (2004) J. Biol. Chem. 279, 22166-22175
18. Le Sommer, C., Lesimple, M., Mereau, A., Menoret, S., Allo, M. R., and Hardy, S. (2005) Mol. Cell. Biol. 25, 9595-9607
19. Screaton, G. R., Caceres, J. F., Mayeda, A., Bell, M. V., Plebanski, M., Jackson, D. G., Bell, J. I., and Krainer, A. R. (1995) EMBO J. 14, 4336-4349
20. Nieuwkoop, P., and Faber, J. (eds) (1956) Normal Table of Xenopus Laevis (Daudin): A Systematical and Chronological Survey of the Development from the Fertilzed Egg till the End of Metamorphosis, North Holland Publishing Co., Amsterdam, The Netherlands
21. Sauliere, J., Sureau, A., Expert-Bezancon, A., and Marie, J. (2006) Mol. Cell. Biol. 26, 8755-8769
22. Frischmeyer, P. A., van Hoof, A., O'Donnell, K., Guerrerio, A. L., Parker, R., and Dietz, H. C. (2002) Science 295, 2258-2261
23. Cartegni, L., Wang, J., Zhu, Z., Zhang, M. Q., and Krainer, A. R. (2003) Nucleic Acids Res. 31, 3568-3571
24. Charlet, B. N., Logan, P., Singh, G., and Cooper, T. A. (2002) Mol. Cell 9, 649-658
25. Gromak, N., Matlin, A. J., Cooper, T. A., and Smith, C. W. (2003) RNA 9, 443-456
26. Sharma, S., Kohlstaedt, L. A., Damianov, A., Rio, D. C., and Black, D. L. (2008) Nat. Struct. Mol. Biol. 15, 183-191
27. Castelo-Branco, P., Furger, A., Wollerton, M., Smith, C., Moreira, A., and Proudfoot, N. (2004) Mol. Cell. Biol. 24, 4174-4183
28. Makeyev, E. V., Zhang, J., Carrasco, M. A., and Maniatis, T. (2007) Mol. Cell 27, 435-448
29. Gawande, B., Robida, M. D., Rahn, A., and Singh, R. (2006) EMBO J. 25, 1263-1272
30. Nesic, D., and Maquat, L. E. (1994) Genes Dev. 8, 363-375
31. Niwa, M., and Berget, S. M. (1991) Genes Dev. 5, 2086-2095
32. Kyburz, A., Friedlein, A., Langen, H., and Keller, W. (2006) Mol. Cell 23, 195-205
33. Millevoi, S., Loulergue, C., Dettwiler, S., Karaa, S. Z., Keller, W., Antoniou, M., and Vagner, S. (2006) EMBO J. 25, 4854-4864
34. Lou, H., Neugebauer, K. M., Gagel, R. F., and Berget, S. M. (1998) Mol. Cell. Biol. 18, 4977-4985
35. Maciolek, N. L., and McNally, M. T. (2007) J. Virol. 81, 11208-11217
36. Kohtz, J. D., Jamison, S. F., Will, C. L., Zuo, P., Luhrmann, R., Garcia-Blanco, M. A., and Manley, J. L. (1994) Nature 368, 119-124
37. Awasthi, S., and Alwine, J. C. (2003) RNA 9, 1400-1409
38. McCracken, S., Lambermon, M., and Blencowe, B. J. (2002) Mol. Cell. Biol. 22, 148-160
39. Longman, D., McGarvey, T., McCracken, S., Johnstone, I. L., Blencowe, B. J., and Caceres, J. F. (2001) Curr. Biol. 11, 1923-1933
40. van Hoof, A., Frischmeyer, P. A., Dietz, H. C., and Parker, R. (2002) Science 295, 2262-2264
41. Lees-Miller, J. P., Goodwin, L. O., and Helfman, D. M. (1990) Mol. Cell. Biol. 10, 1729-1742
42. McGlincy, N. J., and Smith, C. W. (2008) Trends Biochem. Sci. 33, 385-393
43. Kole, R. (1998) in Applied Antisense Oligonucleotides Technology (Stein, C. A., and Krieg, A. M., eds) pp. 451-469, Wiley-Liss, Inc., New York
44. Sazani, P., and Kole, R. (2003) J. Clin. Invest. 112, 481-486
45. Bruno, I. G., Jin, W., and Cote, G. J. (2004) Hum. Mol. Genet. 13, 2409-2420
46. Hua, Y., Vickers, T. A., Okunola, H. L., Bennett, C. F., and Krainer, A. R. (2008) Am. J. Hum. Genet. 82, 834-848