Streptomyces xinghaiensis sp. nov., isolated from marine sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 11, 2009, Pages 2870-2874

  Zhao, Xin Qing ^a   Li, Wen Jun ^b,c   Jiao, Wen Ce ^a   Li, Yan ^b   Yuan, Wen Jie ^a   Zhang, Yu Qin ^d   Klenk, Hans Peter ^e   Suh, Joo Won ^f   Bai, Feng Wu ^a  

^a DALIAN UNIVERSITY OF TECHNOLOGY   (China)

^b YUNNAN UNIVERSITY   (China)

^c SOUTH CHINA SEA INSTITUTE OF OCEANOLOGY   (China)

^d INSTITUTE OF MEDICINAL BIOTECHNOLOGY   (China)

^e LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^f Myong Ji University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

DIAMINO ACID; DIAMINOPIMELIC ACID; FATTY ACID; MENAQUINONE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLINOSITOL; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; DNA BASE COMPOSITION; DNA CONTENT; DNA DNA HYBRIDIZATION; GENOTYPE; MARINE ENVIRONMENT; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; SEDIMENT; STREPTOMYCES; STREPTOMYCES ALBIAXIALIS; STREPTOMYCES FLAVOFUSCUS; STREPTOMYCES XINGHAIENSIS;

DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; STREPTOMYCES;

STREPTOMYCES; STREPTOMYCES ALBIAXIALIS;

EID: 70450228404     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.009878-0     Document Type: Article

References (31)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI_BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Bredholdt, H., Galatenko, O. A., Engelhardt, K., Fjærvik, E., Terekhova, L. P. & Zotchev, S. B. (2007). Rare actinomycete bacteria from the shallow water sediments of the Trondheim fjord, Norway: isolation, diversity and biological activity. Environ Microbiol 9, 2756-2764.
3. Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
4. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
7. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
8. Jahnke, K. D. (1992). BASIC computer program for evaluation of spectroscopic DNA renaturation data from GILFORD SYSTEM 2600 spectrophotometer on a PC/XT/AT type personal computer. J Microbiol Methods 15, 61-73.
9. Jensen, P. R., Gontang, E., Mafnas, C., Mincer, T. J. & Fenical, W. (2005). Culturable marine actinomycete diversity from tropical Pacific Ocean sediments. Environ Microbiol 7, 1039-1048.
10. Kelly, K. L. (1964). Inter-Society Color Council - National Bureau of Standard Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
11. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
12. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
13. Lechevalier, M. P. & Lechevalier, H. A. (1980). The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy, pp. 227-291. Edited by A. Dietz & D. W. Thayer. Arlington, VA: Society for Industrial Microbiology.
14. Lechevalier, M. P., De Bièvre, C. & Lechevalier, H. A. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249-260.
15. Lee, Y. K., Kim, H. W., Liu, C. L. & Lee, H. K. (2003). A simple method for DNA extraction from marine bacteria that produce extracellular materials. J Microbiol Methods 52, 245-250.
16. Maldonado, L. A., Stach, J. E., Pathom-Aree, W., Ward, A. C., Bull, A. T. & Goodfellow, M. (2005). Diversity of cultivable actinobacteria in geographically widespread marine sediments. Antonie van Leeuwenhoek 87, 11-18.
17. Margalith, P. & Beretta, G. (1960). Rifamycin XI: taxonomic study on Streptomyces mediterranei nov. sp. Mycopathol Mycol Appl 13, 321-330.
18. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
19. Montalvo, N. F., Mohamed, N. M., Enticknap, J. J. & Hill, R. T. (2005). Novel actinobacteria from marine sponges. Antonie van Leeuwenhoek 87, 29-36.
20. Pathom-Aree, W., Stach, J. E., Ward, A. C., Horikoshi, K., Bull, A. T. & Goodfellow, M. (2006). Diversity of actinomycetes isolated from Challenger Deep sediment (10,898 m) from the Mariana trench. Extremophiles 10, 181-189.
21. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
22. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
23. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
24. Shirling, E. B. & Gottlieb, D. (1968a). Cooperative description of type cultures of Streptomyces. II. Species descriptions from first study. Int J Syst Bacteriol 18, 69-189.
25. Shirling, E. B. & Gottlieb, D. (1968b). Cooperative description of type cultures of Streptomyces. III. Additional species descriptions from first and second studies. Int J Syst Bacteriol 18, 279-392.
26. Shirling, E. B. & Gottlieb, D. (1969). Cooperative description of type cultures of Streptomyces. IV. Species descriptions from the second, third and fourth studies. Int J Syst Bacteriol 19, 391-512.
27. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
28. Ward, A. C. & Bora, N. (2006). Diversity and biogeography of marine actinobacteria. Curr Opin Microbiol 9, 279-286.
29. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I.,Moore, L.H.,Moore,W. E. C., Murray, R.G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
30. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
31. Zhang, H., Lee, Y. K., Zhang, W. & Lee, H. K. (2006). Culturable actinobacteria from the marine sponge Hymeniacidon perleve: isolation and phylogenetic diversity by 16S rRNA gene-RFLP analysis. Antonie van Leeuwenhoek 90, 159-169.