Dormant and non-dormant Castanea sativa Mill. buds require different polyvinylpyrrolidone concentrations for optimal RNA isolation

Plant Science

Volumn 178, Issue 1, 2010, Pages 55-60

  Santamaría, M Estrella ^a   Toorop, Peter E ^b   Rodríguez, Roberto ^a   Cañal, M Jesús ^a  

^a UNIVERSITY OF OVIEDO   (Spain)

^b ROYAL BOTANIC GARDENS   (United Kingdom)

Author keywords

Arabidopsis; Bud dormancy; Castanea sativa; Polyvinylpyrrolidone; RNA isolation; Secondary seed dormancy

Indexed keywords

ARABIDOPSIS; CASTANEA SATIVA;

EID: 70449724573     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2009.10.002     Document Type: Article

References (36)

1. Loomis W.D. Overcoming problems of phenolics and quinones in the isolation of plant enzymes and organelles. Method Enzymol. 31 (1974) 528-544
2. Wilkins T.A., and Smart L.W. Isolation of RNA from plant tissue. In: Krieg P.A. (Ed). A Laboratory Guide to RNA: Isolation, Analysis and Synthesis (1996), Wiley-Liss, New York 21-42
3. Das O.P., Álvarez C., Chaudhuri S., and Messing J. Molecular methods for genetic analysis of maize. Methods Mol. Cell. Biol. 1 (1990) 213-222
4. Chomczynski P., and Sacchi N. Single step method of RNA extraction by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162 (1987) 156-159
5. Chang S., Puryear J., and Cairney J. A simple and efficient method for isolating RNA from pine trees. Plant Mol. Biol. Rep. 11 (1993) 113-116
6. Salzman R.A., Fujita T., Zhu-Salzman K., Hasegawa P.M., and Bressan R.A. An improved RNA isolation method for plant tissues containing high levels of phenolic compounds or carbohydrates. Plant Mol. Biol. Rep. 17 (1999) 11-17
7. Zeng Y., and Yang T. RNA isolation from highly viscous samples rich in polyphenols and polysaccharides. Plant Mol. Biol. Rep. 20 (2002) 417a-1417a
8. Vicient C.M., and Delseny M. Isolation of total RNA from Arabidopsis thaliana seeds. Anal. Biochem. 268 (1999) 412-413
9. D. Gruffat, Isolation of RNA from mammalian cells: application to large mRNA, in: P.D. Siebert, J.W. Larrick (Eds.), Gene cloning and analysis by RT-PCR, BioTechniques 23 (1998) 35-55.
10. Champagne M.M., and Kuehnle A.R. An effective method for isolating RNA from tissues of Dendrobium. Lindeyana 15 (2000) 165-168
11. Chen G.Y.J., Jin S., and Goodwin P.H. An improved method for the isolation of total RNA from Malva pusilla tissues infected with Colletotrichum gloeosporioides. J. Phytopathol. 148 (2000) 57-60
12. K.L. Chan, C.L. Ho, P. Namasivayam, S. Napis, A simple and rapid method for RNA isolation from plant tissues with high phenolic compounds and polysaccharides, Nat. protocols (2007), doi:10.1038/nprot.2007.184.
13. Codignola A., Maffei M., and Fieschi M. Phenols and bud dormancy II. Qualitative variations in endogenous phenols in dormant buds of Fagus sylvatica L. New Phytol. 110 (1988) 473-477
14. Wan C.H., and Wilkins T.A. A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.). Anal. Biochem. 223 (1994) 7-12
15. Toorop P.E., Barroco R.M., Engler G., Groot S.P.C., and Hilhorst H.W.M. Differentially expressed genes associated with dormancy or germination of Arabidopsis thaliana seeds. Planta 221 (2005) 637-647
16. Kirca A., and Arslan E. Antioxidant capacity and total phenolic content of selected plants from Turkey. Int. J. Food Sci. Technol. 43 (2008) 2038-2046
17. Spanos G.A., and Wrolstad R.E. Influence of processing and storage on the phenolic composition of Thompson Seedless grape juice. J. Agric. Food Chem. 38 (1990) 1565-1571
18. Asif M.H., Dhawan P., and Nath P. A simple procedure for the isolation of high quality RNA from ripening Banana fruit. Plant Mol. Biol. Rep. 18 (2000) 109-115
19. Rohde A., Prinsen E., De Rycke R., Engler G., Van Montagu M., and Boerjan W. PtABI3 impinges on the growth and differentiation of embryonic leaves during bud set in poplar. Plant Cell 14 (2002) 1885-1901
20. Baldwin I.T., Schultz J.C., and Ward D. Patterns and sources of leaf tannin variation in yellow birch (Betula allegheniensis) and sugar maple (Acer saccharum). J. Chem. Ecol. 13 (1987) 1069-1078
21. Waterman P.G., and Mole S. Extrinsic factors influencing production of secondary metabolites in plants. In: Bernays E.A. (Ed). Insect-Plant Interactions vol. 1 (1989), CRC-Press, Boca Raton, FL 107-134
22. Matsuki M. Regulation of plant phenolic synthesis: from biochemistry to ecology and evolution. Aust. J. Bot. 44 (1996) 613-634
23. Suomela J., Ossipov V., and Haukioja E. Variation among and within mountain birch trees in foliage phenols, carbohydrates, and amino acids, and in growth of Epirrita autumnata larvae. J. Chem. Ecol. 21 (1995) 1421-1446
24. Nurmi K., Ossipov V., Haukioja E., and Pihlaja K. Variation of total phenolic content and individual low-molecular-weight phenolics in foliage of mountain birch trees (Betula pubescens spp. Tortuosa). J. Chem. Ecol. 22 (1996) 2023-2040
25. Kause A., Ossipov V., Haukioja E., Lempa K., Hanhimäki S., and Ossipova S. Multiplicity of biochemical factors determining quality of growing birch leaves. Oecologia 120 (1999) 102-112
26. Keinänen M., Julkunen-Tiitto R., Mutikainen P., Walls M., Ovaska J., and Vapaavuori E. Trade-offs in phenolic metabolism of silver birch: Effects of fertilization, defoliation, and genotype. Ecology 80 (1999) 1970-1986
27. Laitinen M.L., Julkunen-Tiitto R., and Rousi M. Variation in phenolic compounds within a birch (Betula pendula) population. J. Chem. Ecol. 26 (2000) 1609-1622
28. Polák T., Rock B.N., Campbell P.E., Soukupová J., Solcová B., Zvára K., and Albrechtová J. Shoot growth processes, assessed by bud development types, reflect Norway spruce vitality and sink prioritization. Forest Ecol. Manag. 225 (2006) 337-348
29. Szecsko V., Hrotko K., and Stefanovits-Banyai E. Seasonal variability in phenol content, peroxidase and polyphenoloxidase enzyme activity during the dormant season in plum rootstocks. Acta Biol. Szegediensis 46 (2002) 211-212
30. Tamagnone L., Merida A., Stacey N., Plaskitt K., Parr A., Chang C.F., Lynn D., Dow J.M., Roberts K., and Martin C. Inhibition of phenolic acid metabolism results in precocious cell death and altered cell morphology in leaves of transgenic tobacco plants. Plant Cell 10 (1998) 1801-1816
31. Halloin J.M. Deterioration resistance mechanisms in seeds. Phytopathology 73 (1983) 335-339
32. Hendry G.A.F., and Grime J.P. Methods in Comparative Plant Ecology-A Laboratory Manual (1993), Chapman & Hall, London, United Kingdom
33. Kremer R.J., and Spencer N.R. Interaction of insects, fungi and burial on velvetleaf (Abutilon theophrasti) seed viability. Weed Technol. 3 (1989) 322-328
34. Veldman J.W., Murray K.G., Hull A.L., Garcia J.M., Mungall W.S., Rotman G.B., Plosz M.P., and McNamara L.K. Chemical defense and the persistence of pioneer plant seeds in the soil of a tropical cloud forest. Biotropica 39 (2007) 87-93
35. Kozlowski T.T. Carbohydrate sources and sinks in woody plants. Bot. Rev. 58 (1992) 107-222
36. Birtic S., and Kranner I. Isolation of high-quality RNA from polyphenol-, polysaccharide- and lipid-rich seeds. Phytochem. Anal. 17 (2006) 144-148