Nuclear DNA content of three Eucalyptus species estimated by flow and image cytometry

Australian Journal of Botany

Volumn 57, Issue 6, 2009, Pages 524-531

  Pra̧a, Milene Miranda ^a   Carvalho, Carlos Roberto ^a   Novaes, Carolina Ribeiro Diniz Boaventura ^b  

^a FEDERAL UNIVERSITY OF VIÇOSA   (Brazil)

^b UNIVERSITY OF FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CULTIVAR; DNA; FLOW CYTOMETRY; IMAGE ANALYSIS; METABOLISM; STATISTICAL ANALYSIS;

EUCALYPTUS; EUCALYPTUS GLOBULUS; EUCALYPTUS GRANDIS; EUCALYPTUS UROPHYLLA; LYCOPERSICON ESCULENTUM; SOLANUM;

EID: 70449686661     PISSN: 00671924     EISSN: None     Source Type: Journal    
DOI: 10.1071/BT09114     Document Type: Article

References (51)

1. Abreu IS, Carvalho CR, Clarindo WR (2008) Chromosomal DNA content of sweet pepper determined by association of cytogenetic and cytometric tools. Plant Cell Reports 27, 1227-1233. doi: 10.1007/s00299-008-0539-4
2. Alan AR, Zeng H, Assani A, Shi WL, McRae HE, Murch SJ, Saxena PK (2007) Assessment of genetic stability of the germplasm lines of medicinal plant Scutellaria baicalensis Georgi (huang-qin) in longterm, in vitro maintained cultures. Plant Cell Reports 26, 1345-1355. Doi: 10.1007/s00299-007-0332-9 (Pubitemid 47124988)
3. Azmi A, Noin M, Landré P, Prouteau M, Boudet AM, Chriqui D (1997) High frequency plant regeneration from Eucalyptus globulus Labill. hypocotyls: ontogenesis and ploidy level of the regenerants. Plant Cell, Tissue and Organ Culture 51, 9-16. doi: 10.1023/A:1005920807555 (Pubitemid 28059206)
4. Bennett MD, Leitch IJ (2005) Nuclear DNA amounts in angiosperms: progress, problems and prospects. Annals of Botany 95, 45-90. doi: 10.1093/aob/mci003 (Pubitemid 41214450)
5. Bennett MD, Price HJ, Johnston S (2008) Anthocyanin inhibits propidium iodide DNA fluorescence in Euphorbia pulcherrima: implications for genome size variation and flow cytometry. Annals of Botany 101, 77-790. doi: 10.1093/aob/mcm303
6. Bocking A, Nguyen VQH (2004) Diagnostic and prognostic use of DNA image cytometry in cervical squamous intraepithelial lesions and invasive carcinoma. Cancer Cytopathology 102, 41-54. doi: 10.1002/cncr.11889 (Pubitemid 38209572)
7. Campa C, Doulbeau S, Dussert S, Hamon S, Noirot M (2005a) Diversity in bean caffeine content among wild Coffea species: evidence of a discontinuous distribution. Food Chemistry 91, 633-637. doi: 10.1016/j.foodchem.2004.06.032 (Pubitemid 40193379)
8. Campa C, Doulbeau S, Dussert S, Hamon S, Noirot M (2005b) Qualitative relationship between caffeine and chlorogenic acid contents among wild Coffea species. Food Chemistry 93, 135-139. doi: 10.1016/j.foodchem.2004.10.015 (Pubitemid 40603423)
9. Carvalho CR, Saraiva LS (1993) A new heterochromatin banding pattern revealed by modified HKG banding technique for maize chromosomes. Heredity 70, 515-519. doi: 10.1038/hdy.1993.74
10. Chieco P, Jonker A, Noorder CJF (2001) 'Image cytometry.' (BIOS and Springer: New York)
11. Clarindo WR, Carvalho CR (2006) A high quality chromosome preparation from cell suspension aggregates culture of Coffea canephora. Cytologia 71, 243-249. doi: 10.1508/cytologia.71.243 (Pubitemid 44699280)
12. Clarindo WR, Carvalho CR (2009) Comparison of the Coffea canephora and C. arabica karyotypes based on chromosomal DNA content. Plant Cell Reports 28, 73-81. doi: 10.1007/s00299-008-0621-y
13. Cros J, Gavalda MC, Chabrillange N, Recalt C, Duperray C, Hamon S (1994) Variations in the total nuclear DNA content in African Coffea species (Rubiaceae). Cafe, Cacao 38, 3-10.
14. Cruz CD (1997) 'Programa GENES - Aplicativo computacional em genética e estatística.' (Editora UFV: Vicosa, Brazil)
15. Doležel J, Bartoš J (2005) Plant DNA flow cytometry and estimation of nuclear genome size. Annals of Botany 95, 99-110. doi:10.1093/aob/mci005 (Pubitemid 41214452)
16. Doležel J, GöhdeW(1995)Sex determination in dioecious plants Melandrium album and M. rubrum using high-resolution flow cytometry. Cytometry 19, 103-106. doi: 10.1002/cyto.990190203
17. Doležel J, Sgorbati S, Lucretti S (1992) Comparison of three DNA fluorochromes for flow cytometric estimation of nuclear DNA content in plants. Physiologia Plantarum 85, 625-631. doi: 10.1111/j.1399-3054.1992.tb04764.x
18. Doležel J, Greilhuber J, Lucretti S, Meister A, Lysák MA, Nardi L, Obermayer R (1998) Plant genome size estimation by flow cytometry: inter-laboratory comparison. Annals of Botany 82, 17-26. doi: 10.1006/anbo.1998.0730 (Pubitemid 29014737)
19. Doležel J, Bartoš J, Voglmayr H, Greilhuber J (2003) Nuclear DNA and genome size of trout and human. Cytometry 51, 127-128. doi: 10.1002/cyto.a.10013
20. Galbraith DW, Harkins KR, Maddox JM, Ayres NM, Sharma DP, Firoozabady E (1983) Rapid flow cytometric analysis of the cell cycle in intact plant tissues. Science 220, 1049-1051. doi: 10.1126/science.220.4601.1049
21. Grattapaglia D, Bradshaw HD Jr (1994) Nuclear DNA content of commercially important Eucalyptus species and hybrids. Canadian Journal of Forest Research 24, 1074-1078. doi: 10.1139/x94-142
22. Greilhuber J (2005) Intraspecific variation in genome size in angiosperms: identifying its existence. Annals of Botany 95, 91-98. doi: 10.1093/aob/mci004 (Pubitemid 41214451)
23. Greilhuber J (2008) Cytochemistry and C-values: the less-well-known world of nuclear DNA amounts. Annals of Botany 101, 791-804. doi: 10.1093/aob/mcm250
24. Greilhuber J, Ebert I (1994) Genome size variation in Pisum sativum. Genome 37, 646-655. doi: 10.1139/g94-092
25. Hardie DC, Gregory TR, Hebert PDN (2002) From pixels to picograms: a beginners' guide to genome quantification by Feulgen image analysis densitometry. Journal of Histochemistry and Cytochemistry 50, 735-749.
26. Haroske G, Baak JPA, Danielsen H, Giroud F, Gschwendtner A, Oberholzer M, Reith A, Spieler P, Böcking A (2001) Fourth updated ESACP consensus report on diagnostic DNA image cytometry. Analytical Cellular Pathology 23, 89-95.
27. Johnston J, Bennett M, Rayburn A, Galbraith D, Price H (1999) Reference standards for determination of DNA content of plant nuclei. American Journal of Botany 86, 609-613. doi: 10.2307/2656569
28. Kovárová P, Navrátilová A, Macas J, Doležel J (2007) Chromosome analysis and sorting in Vicia sativa using flow cytometry. Biologia Plantarum 51, 43-48. doi: 10.1007/s10535-007-0009-9 (Pubitemid 46464783)
29. Ky CL, Louarn S, Dussert S, Guyot B, Hamon S, Noirot M (2001) Caffeine, trigonelline, chlorogenic acids and sucrose diversity in wild Coffea arabica L. and Coffea canephora P. accessions. Food Chemistry 75, 223-230. doi: 10.1016/S0308-8146(01)00204-7 (Pubitemid 32895708)
30. Loureiro J, Rodriguez E, Doležel J, Santos C (2006a) Comparison of four nuclear isolation buffers for plantDNAflow cytometry. Annals of Botany 98, 679-689. doi: 10.1093/aob/mcl141 (Pubitemid 44298402)
31. Loureiro J, Rodriguez E, Doležel J, Santos C (2006b) Flow cytometric and microscopic analysis of the effect of tannic acid on plant nuclei and estimation of DNA content. Annals of Botany 98, 515-527. doi: 10.1093/aob/mcl140 (Pubitemid 44298385)
32. Loureiro J, Rodriguez E, Doležel J, Santos C (2007) Two new nuclear isolation buffers for plant DNA flow cytometry: a test with 37 species. Annals of Botany 100, 875-888. doi: 10.1093/aob/mcm152 (Pubitemid 47511778)
33. Marie D, Brown SC (1993) A cytometric exercise in plant DNA histograms, with 2C values for 70 species. Biology of the Cell 78, 41-51. doi: 10.1016/0248-4900(93)90113-S
34. Meister A (2005) Calculation of binding length of base-specific DNA dyes by comparison of sequence and flow cytometric data. Application to Oryza sativa and Arabidopsis thaliana. Journal of Theoretical Biology 232, 93-97. doi: 10.1016/j.jtbi.2004.07.022 (Pubitemid 39402958)
35. Michaelson MJ, Price HJ, Ellison JR, Johnston JS (1991) Comparison of plant DNA contents determined by Feulgen densitometry and laser flow cytometry. American Journal of Botany 78, 183-188. doi: 10.2307/2445241
36. Neumann P, Požárková D, Vrána J, Doležel J, Macas J (2002) Chromosome sorting and PCR-based physical mapping in pea (Pisum sativum L.). Chromosome Research 10, 63-71. doi: 10.1023/A:1014274328269 (Pubitemid 34121872)
37. Noirot M, Barre P, Louarn J, Duperray C, Hamon S (2000) Nucleus-cytosol interactions - a source of stoichiometric error in flow cytometric estimation of nuclear DNA content in plants. Annals of Botany 86, 309-316. doi: 10.1006/anbo.2000.1187 (Pubitemid 30704588)
38. Noirot M, Barre P, Louarn J, Duperray C, Hamon S (2002) Consequences of stoichiometric error on nuclear DNA content evaluation in Coffea liberica var. dewevrei using DAPI and propidium iodide. Annals of Botany 89, 385-389. doi: 10.1093/aob/mcf056 (Pubitemid 34527435)
39. Noirot M, Barre P, Duperray C, Louarn J, Hamon S (2003) Effects of caffeine and chlorogenic acid on propidium iodide accessibility to DNA: consequences on genome size evaluation in coffee tree. Annals of Botany 92, 259-264. doi: 10.1093/aob/mcg139 (Pubitemid 41295713)
40. Noirot M, Barre P, Christophe D, Hamon S, Kochko A (2005) Investigation on the causes of stoichiometric error in genome size estimation using heat experiments: consequences on data interpretation. Annals of Botany 95, 111-118. doi: 10.1093/aob/mci006 (Pubitemid 41214453)
41. Otto FJ (1990) 'Methods in cell biology.' (Academic Press: San Diego, CA)
42. Pinto G, Loureiro J, Lopes T, Santos C (2004) Analysis of the genetic stability of Eucalyptus globulus Labill. somatic embryos by flow cytometry. Theoretical and Applied Genetics 109, 580-587. doi: 10.1007/s00122-004-1655-3
43. Praca MM, Carvalho CR, Marcelino FC, Mendonca MAC (2008) Morphological aspects of Passiflora edulis f. flavicarpa chromosome using acridine orange banding and rDNA-FISH tools. Caryologia 61, 154-159.
44. Price HJ, Johnston JS (1996) 'Methods of genome analysis in plants.' (CRC Press LLC: Boca Raton)
45. Price HJ, Hodnett G, Johnston JS (2000) Sunflower (Helianthus annuus) leaves contain compounds that reduce nuclear propidium iodide fluorescence. Annals of Botany 86, 929-934. doi: 10.1006/anbo.2000.1255 (Pubitemid 30827502)
46. Puech M, Giroud F (1999) Standardization of DNA quantitation by image analysis: quality control of instrumentation. Cytometry 36, 11-17. doi: 10.1002/(SICI)1097-0320(19990501)36:1〈11::AID-CYTO2〉3.0. CO;2-T
47. Singh RJ (2003) 'Plant cytogenetics.' (CRC Press LLC: Boca Raton)
48. Vilhar B, Dermastia M (2002) Standardization of instrumentation in plant DNA image cytometry. Acta Botanica Croatica 61, 11-26.
49. Vilhar B, Greilhuber J, Dolenc Koce J, Temsch EM, Dermastia M (2001) Plant genome size measurement with DNA image cytometry. Annals of Botany 87, 719-728. doi: 10.1006/anbo.2001.1394 (Pubitemid 32526309)
50. Walker DJ, Monino I, Correal E (2006) Genome size in Bituminaria bituminosa (L.) C.H.Stirton (Fabaceae) populations: separation of 'true' differences from enviromental effects on DNA determination. Environmental and Experimental Botany 55, 258-265. doi: 10.1016/j.envexpbot.2004.11.005 (Pubitemid 41785570)
51. Zoldos V, Papes D, Brown SC, Panaud O, Siljak-Yakovlev S (1998) Genome size and base composition of seven Quercus species: inter- and intrapopulation variation. Genome 41, 162-168. doi: 10.1139/gen-41-2-162