Prion-associated proteins in yeast: Comparative analysis of isogenic [PSI+] and [psi-] strains

Yeast

Volumn 26, Issue 11, 2009, Pages 611-631

  Nevzglyadova, Olga V ^a   Artemov, Alexey V ^a   Mittenberg, Alexey G ^a   Solovyov, Kirill V ^b   Kostyleva, Elena I ^a   Mikhailova, Ekaterina V ^a   Kuznetsova, Irina M ^a   Turoverov, Konstantin K ^a   Soidla, Tonu R ^a  

^a INSTITUTE OF CYTOLOGY   (Russian Federation)

^b INSTITUTE OF BIOMEDICAL CHEMISTRY   (Russian Federation)

Author keywords

Amyloid; Cytoduction; Heterokaryon; Prion; Saccharomyces cerevisiae

Indexed keywords

CHAPERONE; GUANIDINE; HEAT SHOCK PROTEIN 104; POLYMER; PRION PROTEIN; PROTEINASE;

ARTICLE; CELL LYSATE; COISOGENIC STRAIN; CONTROLLED STUDY; FUNGAL STRAIN; GENE OVEREXPRESSION; GENOTYPE; GLUCOSE METABOLISM; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATIVE STRESS; PRION; PRIORITY JOURNAL; PROTEIN AGGREGATION; PROTEIN ANALYSIS; PROTEIN CONTENT; PROTEIN EXPRESSION; PROTEIN METABOLISM; PROTEIN PROCESSING; PROTEIN PROTEIN INTERACTION; SACCHAROMYCES CEREVISIAE; STRAIN DIFFERENCE; TWO DIMENSIONAL ELECTROPHORESIS; YEAST CELL;

ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FUNGAL PROTEINS; PRIONS; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

SACCHAROMYCES CEREVISIAE;

EID: 70449646910     PISSN: 0749503X     EISSN: 10970061     Source Type: Journal    
DOI: 10.1002/yea.1710     Document Type: Article

References (52)

1. Alberti S, Halfmann R, King O, et al. 2009. A systematic survey identifies prions and illuminates sequence features of prionogenic proteins. Cell 137: 146-158.
2. Alexandrov IM, Vishnevskaya AB, Ter-Avanesyan MD, Kushnirov VV. 2008. Appearance and propagation of polyglutaminebased amyloids in yeast: tyrosine residues enable polymer fragmentation. J Biol Chem 283: 15185-15192.
3. +] aggregates with heterogeneous protein composition. Mol Biol Cell 19: 2433-2443.
4. Banci L, Bertini I, Boca M, et al. 2008. SOD1 and amyotrophic lateral sclerosis: mutations and oligomerization. PLoS ONE 3: e1677. (Pubitemid 351891080)
5. Buchan JR, Muhlrad D, Parker R. 2008. P bodies promote stress granule assembly in Saccharomyces cerevisiae. J Cell Biol 183: 441-455.
6. Cashikar AG, Duennwald M, Lindquist SL. 2005. A chaperone pathway in protein disaggregation: HSP26 alters the nature of protein aggregates to facilitate reactivation by HSP104. J Biol Chem 280: 23869-23875. (Pubitemid 40884874)
7. Chernoff YO. 2004. Cellular control of prion formation and propagation in yeast. In Prions and Prion Diseases: Current Perspectives, Telling GC (ed.). Horizon Bioscience: Wymondham; 257-303.
8. Chernoff YO. 2008. Identity determinants of infectious proteins. Proc Natl Acad Sci USA 105: 13191-13192.
9. +]. Science 268: 880-884.
10. Chernoff YO, Newnam GP, Kumar J, et al. 1999. Evidence of a protein mutator in yeast: role of the Hsp70-related chaperone Ssb in formation, stability, and toxicity of the [PSI ] prion. Mol Cell Biol 19: 8103-8112. (Pubitemid 30414005)
11. Chernoff YO, Uptain SM, Lindquist SL. 2002. Analysis of prion factors in yeast. Methods Enzymol 351: 499-537.
12. Chernova TA, Allen KD, Wesoloski LM, et al. 2003. Pleiotropic effects of Ubp6 loss on drug sensitivities and yeast prion are due to depletion of the free ubiquitin pool. J Biol Chem 278: 52102-52115.
13. Crist CG, Nakayashiki T, Kurahashi H, Nakamura Y. 2003. [PHI+], a novel Sup35-prion variant propagated with non-Gln/Asn oligopeptide repeats in the absence of the chaperone protein Hsp104. Genes Cells 8: 603-618. (Pubitemid 36880845)
14. Cox BS, Byrne L, Tuite MF. 2007. Prion stability. In Proteinbased Inheritance, Chernoff YO (ed.). Landes Bioscience: Austin, TX; 56-72.
15. +] prion factors in Saccharomyces cerevisiae. Genetics 144: 1375-1386.
16. Derkatch IL, Liebman SW. 2007. Prion-prion interactions. In Protein-based Inheritance, Chernoff YO (ed.). Landes Bioscience: Austin, TX; 39-55.
17. Du Z, Park K-W, Yu H, et al. 2008. Newly identified prion linked to the chromatin-remodeling factor Swi1 in Saccharomyces cerevisiae. Nat Genet 40: 460-465.
18. Elam JS, Taylor AB, Strange R, et al. 2003. Amyloid-like filaments and water-filled nanotubes formed by SOD1 mutant proteins linked to familial ALS. Nat Struct Biol 10: 461-467. (Pubitemid 36637644)
19. Erjavec N, Larsson L, Grantham J, Nystrom T. 2007. Accelerated aging and failure to segregate damaged proteins in Sir2 mutants can be suppressed by overproducing the protein aggregationre-modeling factor Hsp104p. Genes Dev 21: 2410-2421. (Pubitemid 47529371)
20. Glabe CG. 2008. Statistical classification of toxic amyloid oligomers. J Biol Chem 283: 29639-29643.
21. Herczenik E, Gebbink MFBG. 2008. Molecular and cellular aspects of protein misfolding and disease. FASEB J 22: 2115-2133. (Pubitemid 351948631)
22. +]. Genetics 163: 495-506.
23. +] as a cellular stress. Genetics 156: 559-570.
24. +] protein aggregates are formed by small Sup35 polymers fragmented by Hsp104. J Biol Chem 278: 49636-49643.
25. Kushnirov VV, Alexandrov IM, Mitkevich OV, et al. 2006. Purification and analysis of prion and amyloid aggregates. Methods 39: 50-55. (Pubitemid 43994494)
26. Kushnirov VV, Vishnevskaya AB, Alexandrov AM, Ter-Avanesyan MD. 2007. Prion and nonprion amyloids: a comparison inspired by the yeast Sup35 protein. In Protein-based Inheritance, Chernoff YO (ed.). Landes Bioscience: Austin, TX; 73-82.
27. Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
28. Lian HY, Zhang H, Zhang Z-R, et al. 2007. Hsp40 interacts directly with the native state of the yeast prion protein Ure2 and inhibits formation of amyloid-like fibrils. J Biol Chem 282: 11931-11940. (Pubitemid 47100673)
29. Michelitsch MD, Weissman JS. 2000. A census of glutamine/asparagine-rich regions: implications for their conserved function and the prediction of novel prions. Proc Natl Acad Sci USA 97: 11910-11915.
30. Nemecek J, Nakayashiki T, Wickner RB. 2009. A prion of yeast metacaspase homolog (Mca1p) detected by a genetic screen. Proc Natl Acad Sci USA 106: 1892-1896.
31. Nevzglyadova OV, Artyomov AV, Mikhailova EV, Soidla TR. 2004. The impact of manipulations with cytoplasmically inherited factors on nuclear transmission and degradation in yeast heterokaryons. Curr Genet 45: 273-282.
32. Nevzglyadova OV, Kuznetsova IM, Artemov AV, et al. 2008. Comparative assay of amyloid and prion contents in yeast cells. Cell Tissue Biol 2: 71-80.
33. Patel BK, Gavin-Smyth J, Liebman SW. 2009. The yeast global transcriptional co-repressor protein Cyc8 can propagate as a prion. Nat Cell Biol 11: 344-349.
34. Rikhvanov EG, Romanova NV, Chernoff YO. 2007. Chaperone effects on prion and nonprion aggregates. In Protein-based Inheritance, Chernoff YO (ed.). Landes Bioscience: Austin, TX; 83-92.
35. Roberts BT, Wickner RB. 2003. A class of prions that propagate via covalent auto-activation. Genes Dev 17: 2083-2087.
36. Santoso A, Chien P, Osherovich LZ, Weissman JS. 2000. Molecular basis of a yeast prion species barrier. Cell 100: 277-288. (Pubitemid 30064915)
37. Severin SE, Solovyov GA. 1989. Praktikum po biokhimii [Manual of Biochemistry]. Moscow University Press: Moscow.
38. Sharma D, Stanley RF, Masison DC. 2009. Curing of yeast [URE3] prion by the Hsp40 cochaperone Ydj1p is mediated by Hsp70. Genetics 181: 129-137.
39. Sherman F, Fink GR, Hicks JB. 1986. Laboratory Course Manual for Methods in Yeast Genetics. Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY.
40. Sitia R, Molteni SN. 2004. Stress, protein (mis)folding, and signaling: the redox connection. Sci STKE 239: pe27.
41. +] prion propagation in S. cerevisiae by comprehensive chromosomal mutations. Prion 1: 69-77.
42. Taneja V, Maddelein ML, Talarek N, et al. 2007. A non-Q/N-rich prion domain of a foreign prion, [Het-s], can propagate as a prion in yeast. Mol Cell 27: 67-77. (Pubitemid 46991382)
43. +] prion in yeast. Prion 1: 101-109.
44. Wang Y, Meriin AB, Costello CE, Sherman MY. 2007. Characterization of proteins associated with polyglutamine aggregates: a novel approach towards isolation of aggregates from protein conformation disorders. Prion 1: 128-135.
45. Wang Y, Meriin AB, Zaarur N, et al. 2008. Abnormal proteins can form aggresome in yeast: aggresome-targeting signals and components of the machinery. FASEB J 23: 451-463.
46. Watt NT, Taylor DR, Gillott A, et al. 2005. Reactive oxygen species-mediated β-cleavage of the prion protein in the cellular response to oxidative stress. J Biol Chem 280: 35914-35921. (Pubitemid 41633859)
47. Wickner RB. 1994. [URE3] as an altered URE2 protein: Evidence for a prion analog in S. cerevisiae. Science 264: 566-569.
48. +] and [β]. Methods 39: 3-8.
49. Wickner RB, Edskes HK, Shewmaker F, et al. 2007. Yeast prions: evolution of the prion concept. Prion 1: 94-100.
50. Wickner RB, Shewmaker F, Kryndushkin D, Edskes HK. 2008. Protein inheritance (prions) based on parallel in-register β-sheet amyloid structures. BioEssays 30: 955-964.
51. Zakharov IA, Yarovoy B. 1977. Cytoduction as a new tool in studying the cytoplasmic heredity in yeast. Mol Cell Biochem 14: 15-18.
52. Zhou RY, Li XL, Li LH, et al. 2008. Evolution and differentiation of the prion protein gene (PRNP) among species. J Heredity 99: 647-652.