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Volumn 9, Issue 1, 2010, Pages 87-97

Genetic diversity and molecular phylogeny of Planktothrix (Oscillatoriales, cyanobacteria) strains from China

Author keywords

16S rRNA; Diversity; Phylogeny; Planktothrix; rbcLX; rpoC1; Taxonomy; Water bloom

Indexed keywords

ANAGNOSTIDIS; CYANOBACTERIA; OSCILLATORIALES; PLANKTOTHRIX; PLANKTOTHRIX AGARDHII; PLANKTOTHRIX MOUGEOTII; PLANKTOTHRIX PSEUDAGARDHII;

EID: 70449526522     PISSN: 15689883     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.hal.2009.08.004     Document Type: Article
Times cited : (43)

References (46)
  • 2
    • 0000026049 scopus 로고
    • Modern approach to the classification system of cyanophytes 3 - Oscillatoriales
    • Anagnostidis K., and Komárek J. Modern approach to the classification system of cyanophytes 3 - Oscillatoriales. Algological Stud. 50-53 (1988) 327-472
    • (1988) Algological Stud. , vol.50-53 , pp. 327-472
    • Anagnostidis, K.1    Komárek, J.2
  • 3
    • 1642442762 scopus 로고    scopus 로고
    • Seasonal and inter-annual scales of variability in phytoplankton assemblages: comparison of phytoplankton dynamics in three peri-alpine lakes over a period of 28 years
    • Anneville O., Souissi S., Gammeter S., and Straile D. Seasonal and inter-annual scales of variability in phytoplankton assemblages: comparison of phytoplankton dynamics in three peri-alpine lakes over a period of 28 years. Freshwater Biol. 49 (2004) 98-115
    • (2004) Freshwater Biol. , vol.49 , pp. 98-115
    • Anneville, O.1    Souissi, S.2    Gammeter, S.3    Straile, D.4
  • 4
    • 0033869508 scopus 로고    scopus 로고
    • Gas vesicle genes in Planktothrix spp. from Nordic lakes: strains with weak gas vesicles possess a longer variant of gvpC
    • Beard S.J., Davis P.A., Iglesias-Rodriguez D., Skulberg O.M., and Walsby A.E. Gas vesicle genes in Planktothrix spp. from Nordic lakes: strains with weak gas vesicles possess a longer variant of gvpC. Microbiology-UK 146 (2000) 2009-2018
    • (2000) Microbiology-UK , vol.146 , pp. 2009-2018
    • Beard, S.J.1    Davis, P.A.2    Iglesias-Rodriguez, D.3    Skulberg, O.M.4    Walsby, A.E.5
  • 5
    • 0032824141 scopus 로고    scopus 로고
    • The diversity of gas vesicle genes in Planktothrix rubescens from Lake Zürich
    • Beard S.J., Handley B.A., Hayes B.A., and Walsby A.E. The diversity of gas vesicle genes in Planktothrix rubescens from Lake Zürich. Microbiology 145 (1999) 2757-2768
    • (1999) Microbiology , vol.145 , pp. 2757-2768
    • Beard, S.J.1    Handley, B.A.2    Hayes, B.A.3    Walsby, A.E.4
  • 6
    • 13444256660 scopus 로고    scopus 로고
    • Different gvpC length variants are transcribed within single filaments of the cyanobacterium Planktothrix rubescens
    • Becker S., Hayes P.K., and Walsby A.E. Different gvpC length variants are transcribed within single filaments of the cyanobacterium Planktothrix rubescens. Microbiology-SGM 151 (2005) 59-67
    • (2005) Microbiology-SGM , vol.151 , pp. 59-67
    • Becker, S.1    Hayes, P.K.2    Walsby, A.E.3
  • 7
    • 0025735788 scopus 로고
    • Evolutionary relationships among eubacteria, cyanobacteria, and chloroplasts: evidence from the rpoC1 gene of Anabaena sp. strain PCC 7120
    • Bergsland K.J., and Haselkorn R. Evolutionary relationships among eubacteria, cyanobacteria, and chloroplasts: evidence from the rpoC1 gene of Anabaena sp. strain PCC 7120. J. Bacteriol. 173 (1991) 3446-3455
    • (1991) J. Bacteriol. , vol.173 , pp. 3446-3455
    • Bergsland, K.J.1    Haselkorn, R.2
  • 9
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 10
    • 19344373344 scopus 로고    scopus 로고
    • First report in a river in France of the benthic cyanobacterium Phormidium favosum producing anatoxin associated with dog neurotoxicosis
    • Gugger M., Lenoir S., Berger C., Ledreux A., Druart J.C., Humbert J.F., Guette C., and Bernard C. First report in a river in France of the benthic cyanobacterium Phormidium favosum producing anatoxin associated with dog neurotoxicosis. Toxicon 45 (2005) 919-928
    • (2005) Toxicon , vol.45 , pp. 919-928
    • Gugger, M.1    Lenoir, S.2    Berger, C.3    Ledreux, A.4    Druart, J.C.5    Humbert, J.F.6    Guette, C.7    Bernard, C.8
  • 12
    • 34548542869 scopus 로고    scopus 로고
    • Doing battle with the green monster of Taihu Lake
    • Guo L. Doing battle with the green monster of Taihu Lake. Science 317 (2007) 1166
    • (2007) Science , vol.317 , pp. 1166
    • Guo, L.1
  • 13
    • 45849101687 scopus 로고    scopus 로고
    • Genetic characterization of Cylindrospermopsis raciborskii (Nostocales Cyanobacteria) isolates from Africa and Europe
    • Haande S., Rohrlack T., Ballot A., Røberg K., Skulberg R., Beck M., and Wiedner C. Genetic characterization of Cylindrospermopsis raciborskii (Nostocales Cyanobacteria) isolates from Africa and Europe. Harmful Algae 7 (2008) 692-701
    • (2008) Harmful Algae , vol.7 , pp. 692-701
    • Haande, S.1    Rohrlack, T.2    Ballot, A.3    Røberg, K.4    Skulberg, R.5    Beck, M.6    Wiedner, C.7
  • 14
    • 42149117107 scopus 로고    scopus 로고
    • Genetic diversity in strains of the genus Anabaena isolated from planktonic and benthic habitats of the Gulf of Finland (Baltic Sea)
    • Halinen K., Fewer D., Sihvonen L., Lyra C., Eronen E., and Sivonen K. Genetic diversity in strains of the genus Anabaena isolated from planktonic and benthic habitats of the Gulf of Finland (Baltic Sea). FEMS Microbiol. Ecol. 64 (2008) 199-208
    • (2008) FEMS Microbiol. Ecol. , vol.64 , pp. 199-208
    • Halinen, K.1    Fewer, D.2    Sihvonen, L.3    Lyra, C.4    Eronen, E.5    Sivonen, K.6
  • 15
    • 0035129623 scopus 로고    scopus 로고
    • Genetic diversity in two species of freshwater cyanobacteria Planktothrix (Oscillatoria) rubescens and P. agardhii
    • Humbert J.F., and Le Berre B. Genetic diversity in two species of freshwater cyanobacteria Planktothrix (Oscillatoria) rubescens and P. agardhii. Arch. Hydrobiol. 150 (2001) 197-206
    • (2001) Arch. Hydrobiol. , vol.150 , pp. 197-206
    • Humbert, J.F.1    Le Berre, B.2
  • 16
    • 5544226554 scopus 로고
    • Media for freshwater cyanobacteria
    • Nishizawa K., and Chihara M. (Eds), Kyouritsu Shuppan, Tokyo
    • Ichimura T. Media for freshwater cyanobacteria. In: Nishizawa K., and Chihara M. (Eds). Methods in Phycology (1979), Kyouritsu Shuppan, Tokyo 295-296
    • (1979) Methods in Phycology , pp. 295-296
    • Ichimura, T.1
  • 18
    • 35348869097 scopus 로고    scopus 로고
    • Taxonomic review of the cyanoprokaryotic genera Planktothrix and Planktothricoides
    • Komárek J., and Komárková J. Taxonomic review of the cyanoprokaryotic genera Planktothrix and Planktothricoides. Czech. Phycol., Olomouc 4 (2004) 1-18
    • (2004) Czech. Phycol., Olomouc , vol.4 , pp. 1-18
    • Komárek, J.1    Komárková, J.2
  • 19
    • 0036755924 scopus 로고    scopus 로고
    • Molecular phylogenies of Udoteaceae (Bryopsidales, Chlorophyta) reveal nonmonophyly for Udotea, Penicillus and Chlorodesmis
    • Kooistra W. Molecular phylogenies of Udoteaceae (Bryopsidales, Chlorophyta) reveal nonmonophyly for Udotea, Penicillus and Chlorodesmis. Phycologia 41 (2002) 453-462
    • (2002) Phycologia , vol.41 , pp. 453-462
    • Kooistra, W.1
  • 20
    • 19044379783 scopus 로고    scopus 로고
    • Genetic identification of microcystin ecotypes in toxic cyanobacteria of the genus Planktothrix
    • Kurmayer R., Christiansen G., Gumpenberger M., and Fastner J. Genetic identification of microcystin ecotypes in toxic cyanobacteria of the genus Planktothrix. Microbiology 151 (2005) 1525-1533
    • (2005) Microbiology , vol.151 , pp. 1525-1533
    • Kurmayer, R.1    Christiansen, G.2    Gumpenberger, M.3    Fastner, J.4
  • 21
    • 36448991500 scopus 로고    scopus 로고
    • Clustal W and Clustal X version 2.0
    • Larkin M.A., and Blackshields G. Clustal W and Clustal X version 2.0. Bioinformatics 23 (2007) 2947-2948
    • (2007) Bioinformatics , vol.23 , pp. 2947-2948
    • Larkin, M.A.1    Blackshields, G.2
  • 22
    • 70449519679 scopus 로고    scopus 로고
    • Physiological characteristics of Planktothrix agardhii-a new taxa of bloom cyanophyta in China
    • Lin S., Peng X., Wu Z.X., and Li R.H. Physiological characteristics of Planktothrix agardhii-a new taxa of bloom cyanophyta in China. J. Lake Sci. 20 4 (2008) 437-442
    • (2008) J. Lake Sci. , vol.20 , Issue.4 , pp. 437-442
    • Lin, S.1    Peng, X.2    Wu, Z.X.3    Li, R.H.4
  • 23
    • 17244367035 scopus 로고    scopus 로고
    • Variability of the microcystin synthetase gene cluster in the genus Planktothrix (Oscillatoriales cyanobacteria)
    • Mbedi S., Welker M., Fastner J., and Wiedner C. Variability of the microcystin synthetase gene cluster in the genus Planktothrix (Oscillatoriales cyanobacteria). FEMS Microbiol. Lett. 245 (2006) 299-306
    • (2006) FEMS Microbiol. Lett. , vol.245 , pp. 299-306
    • Mbedi, S.1    Welker, M.2    Fastner, J.3    Wiedner, C.4
  • 25
    • 0028871685 scopus 로고
    • Genetic diversity and phylogeny of toxic cyanobacteria determined by DNA polymorphisms within the phycocyanin locus
    • Neilan B.A., Jacobs D., and Goodman A.E. Genetic diversity and phylogeny of toxic cyanobacteria determined by DNA polymorphisms within the phycocyanin locus. Appl. Environ. Microbiol. 61 (1995) 3327-3332
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3327-3332
    • Neilan, B.A.1    Jacobs, D.2    Goodman, A.E.3
  • 27
    • 0032125218 scopus 로고    scopus 로고
    • 16S rDNA sequences and phylogenetic analyses of Microcystis strains with and without phycoerythrin
    • Otsuka S., Suda S., Li R., Watanabe M., and Oyaizu H. 16S rDNA sequences and phylogenetic analyses of Microcystis strains with and without phycoerythrin. FEMS Microbiol. Lett. 164 (2006) 119-124
    • (2006) FEMS Microbiol. Lett. , vol.164 , pp. 119-124
    • Otsuka, S.1    Suda, S.2    Li, R.3    Watanabe, M.4    Oyaizu, H.5
  • 28
    • 0023514080 scopus 로고
    • Evolution in bacteria: evidence for a universal substitution rate in cellular genomes
    • Palenik B., and Haselkon R. Evolution in bacteria: evidence for a universal substitution rate in cellular genomes. J. Mol. Evol. 26 (1992) 74-86
    • (1992) J. Mol. Evol. , vol.26 , pp. 74-86
    • Palenik, B.1    Haselkon, R.2
  • 29
    • 0029815763 scopus 로고    scopus 로고
    • Cyanobacterial evolution and prochlorophyte diversity as seen in DNA-dependent RNA polymerase gene sequences
    • Palenik B., and Swift H. Cyanobacterial evolution and prochlorophyte diversity as seen in DNA-dependent RNA polymerase gene sequences. J. Phycol. 32 (1996) 638-646
    • (1996) J. Phycol. , vol.32 , pp. 638-646
    • Palenik, B.1    Swift, H.2
  • 30
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 31
    • 4243641811 scopus 로고
    • Oscillatoria agardhii var. suspensa nov. var. Kleine Mitteilungen über Flagellaten und Algen. X
    • Pringsheim E.G. Oscillatoria agardhii var. suspensa nov. var. Kleine Mitteilungen über Flagellaten und Algen. X. Arch. Microbiol. 50 (1965) 401-413
    • (1965) Arch. Microbiol. , vol.50 , pp. 401-413
    • Pringsheim, E.G.1
  • 33
    • 0024202813 scopus 로고
    • Isolation and purification of cyanobacteria
    • Rippka R. Isolation and purification of cyanobacteria. Methods Enzymol. 167 (1988) 3-27
    • (1988) Methods Enzymol. , vol.167 , pp. 3-27
    • Rippka, R.1
  • 35
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis
    • Rozas J., and Rozas R. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15 (1999) 174-175
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 36
    • 8544276549 scopus 로고    scopus 로고
    • Factors controlling the dominance of Planktothrix agardhii and Limnothrix redekei in eutrophic shallow lakes
    • Rücker J., Wiedner C., and Zippel P. Factors controlling the dominance of Planktothrix agardhii and Limnothrix redekei in eutrophic shallow lakes. Hydrobiologia 342/343 (1997) 107-115
    • (1997) Hydrobiologia , vol.342-343 , pp. 107-115
    • Rücker, J.1    Wiedner, C.2    Zippel, P.3
  • 37
    • 0031801745 scopus 로고    scopus 로고
    • Evolution of cyanobacteria by exchange of genetic material among phylogenetically related strains
    • Rudi K., Skulberg O.M., and Jakobsen K.S. Evolution of cyanobacteria by exchange of genetic material among phylogenetically related strains. J. Bacteriol. 180 (1998) 3453-3461
    • (1998) J. Bacteriol. , vol.180 , pp. 3453-3461
    • Rudi, K.1    Skulberg, O.M.2    Jakobsen, K.S.3
  • 38
    • 0030825395 scopus 로고    scopus 로고
    • On the dominance of filamentous cyanobacteria in shallow turbid lakes
    • Scheffer M., Rinaldi S., Gragnania M.L.R., and Van E.H. On the dominance of filamentous cyanobacteria in shallow turbid lakes. Ecology 78 (1997) 272-282
    • (1997) Ecology , vol.78 , pp. 272-282
    • Scheffer, M.1    Rinaldi, S.2    Gragnania, M.L.R.3    Van, E.H.4
  • 39
    • 0141813540 scopus 로고    scopus 로고
    • The phylogenetic relationships of cyanobacteria inferred from 16S rRNA, gyrB, rpoC1 and rpoD1 gene sequences
    • Seo P., and Yokota A. The phylogenetic relationships of cyanobacteria inferred from 16S rRNA, gyrB, rpoC1 and rpoD1 gene sequences. J. Gen. Appl. Microbiol. 49 (2003) 191-203
    • (2003) J. Gen. Appl. Microbiol. , vol.49 , pp. 191-203
    • Seo, P.1    Yokota, A.2
  • 41
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., and Dudley J. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2
  • 42
    • 0030667721 scopus 로고    scopus 로고
    • Synechococcus diversity in the California current as seen by RNA polymerase (rpoC1) gene sequences of isolated strains
    • Toledo G., and Palenik B. Synechococcus diversity in the California current as seen by RNA polymerase (rpoC1) gene sequences of isolated strains. Appl. Environ. Microbiol. 63 (1997) 4298-4303
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4298-4303
    • Toledo, G.1    Palenik, B.2
  • 43
    • 34249666092 scopus 로고    scopus 로고
    • Species boundaries and phylogenetic relationships within the green algal genus Codium (Bryopsidales) based on plastid DNA sequences
    • Verbruggen H., Leliaert F., Maggs C.A., Shimada S., and Schils T. Species boundaries and phylogenetic relationships within the green algal genus Codium (Bryopsidales) based on plastid DNA sequences. Mol. Phylogenet. Evol. 44 (2007) 240-254
    • (2007) Mol. Phylogenet. Evol. , vol.44 , pp. 240-254
    • Verbruggen, H.1    Leliaert, F.2    Maggs, C.A.3    Shimada, S.4    Schils, T.5
  • 44
    • 0033987456 scopus 로고    scopus 로고
    • Molecular characterization of the toxic cyanobacterium Cylindrospermopsis raciborskii and design of a species-specific PCR
    • Wilson K.M., Schembri M.A., Baker P.D., and Saint C.P. Molecular characterization of the toxic cyanobacterium Cylindrospermopsis raciborskii and design of a species-specific PCR. Appl. Environ. Microbiol. 66 1 (2000) 332-338
    • (2000) Appl. Environ. Microbiol. , vol.66 , Issue.1 , pp. 332-338
    • Wilson, K.M.1    Schembri, M.A.2    Baker, P.D.3    Saint, C.P.4
  • 45
    • 33846042691 scopus 로고    scopus 로고
    • Cyanobacterial systematics in the genomic era
    • Wood A.M., Castenholz R., and Waterbury J.B. Cyanobacterial systematics in the genomic era. J. Phycol. 37 3 Suppl. (2001) 54
    • (2001) J. Phycol. , vol.37 , Issue.3 SUPPL , pp. 54
    • Wood, A.M.1    Castenholz, R.2    Waterbury, J.B.3
  • 46
    • 0142126874 scopus 로고    scopus 로고
    • Multiple cryptic species: molecular diversity and reproductive isolation in the Bostrychia radicans/B. moritziana complex (Rhodomelaceae Rhodophyta) with focus on North American isolates
    • Zuccarello G.C., and West J.A. Multiple cryptic species: molecular diversity and reproductive isolation in the Bostrychia radicans/B. moritziana complex (Rhodomelaceae Rhodophyta) with focus on North American isolates. J. Phycol. 39 (2003) 948-959
    • (2003) J. Phycol. , vol.39 , pp. 948-959
    • Zuccarello, G.C.1    West, J.A.2


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