Taxonomic revision of water-bloom-forming species of oscillatorioid cyanobacteria

International Journal of Systematic and Evolutionary Microbiology

Volumn 52, Issue 5, 2002, Pages 1577-1595

  Suda, Shoichiro ^a   Watanabe, Makoto M ^a   Otsuka, Shigeto ^a   Mahakahant, Aparat ^a   Yongmanitchai, Wichien ^a   Nopartnaraporn, Napavarn ^a   Liu, Yongding ^a   Day, John G ^a  

^a NATIONAL INSTITUTE FOR ENVIRONMENTAL STUDIES   (Japan)

Author keywords

Cyanobacteria; Nomenclature; Oscillatorioid; Taxonomy; Water bloom

Indexed keywords

PHYCOBILIPROTEIN; PHYCOCYANIN; PHYCOERYTHRIN; RIBOSOME DNA;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIOPLANKTON; CONTROLLED STUDY; CYANOBACTERIUM; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; LIPID COMPOSITION; MORPHOLOGICAL ADAPTATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SALT TOLERANCE; SEQUENCE ANALYSIS; SPECIES DIFFERENTIATION; TAXONOMY;

BASE COMPOSITION; BASE SEQUENCE; CYANOBACTERIA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FRESH WATER; MOLECULAR SEQUENCE DATA; PHYCOBILINS; PHYCOCYANIN; PHYLOGENY; PYRROLES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; TEMPERATURE; TERMINOLOGY; TETRAPYRROLES;

BACTERIA (MICROORGANISMS); CYANOBACTERIA; LIMNOTHRIX REDEKEI; OSCILLATORIA; OSCILLATORIA PRINCEPS; PLANKTOTHRICOIDES RACIBORSKII; PLANKTOTHRIX AGARDHII; PLANKTOTHRIX MOUGEOTII; PLANKTOTHRIX PSEUDAGARDHII; PLANKTOTHRIX RUBESCENS; TYCHONEMA BOURRELLYI;

EID: 0036737897     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.01834-0     Document Type: Article

References (46)

1. Anagnostidis, K. & Komárek, J. (1988). Modern approach to the classification system of cyanophytes. 3 - Oscillatoriales. Arch Hydrobiol Suppl 80 (Algol tud 50-53), 327-472.
2. Anagnostidis, K., Overbeck, J. & Danielidis, D. (1985). Oscillatoria cf. agardhii var. isothrix Skuja from the lakes of Amvrakia and Trichonis, Greece. A taxonomic consideration. Arch Hydrobiol 104, 205-217.
3. Bourrelly, P. (1985). Les Algues d'eau Douce. III, 2nd edn. Paris: N. Boubée & Cie.
4. Castenholz, R. W. & Waterbury, J. B. (1989). Group I. Cyanobacteria. Preface. In Bergey's Manual of Systematic Bacteriology, vol. 3, pp. 1710-1727. Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt. Baltimore: Williams & Wilkins.
5. Desikachary, T. V. (1959). Cyanophyta. ICAR Monographs on Algae. New Delhi: Indian Council of Agricultural Research.
6. Devereux, R., He, S. H., Doyle, C. L., Orkland, S., Stahl, D. A., LeGall, J. & Whitman, W. B. (1990). Diversity and origin of Desulfovibrio species: phylogenetic definition of a family. J Bacteriol 172, 3609-3619.
7. Elenkin, A. A. (1949). Monographia algarum cyanophycearum aquidulcium et terrestrium infinibus URSS inventarum [Sinezelenye vodorosli SSSR], Pars specialis (Systematica) Fasc. II. Moscow & Leningrad: Izd. Acad. Nauk. SSSR.
8. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
9. Forti, A. (1907). Myxophyceae. In Sylloge Algarum Onmium. Edited by De Toni. Padua.
10. Geitler, L. (1932). Cyanophyceae. In Rabenhorst's Kryptogamenflora, vol. 14, pp. 1-1196. Leipzig: Akademie Verlagsges.
11. Gomont, M. M. (1892). Monographie des Oscillariées (Nostocacées homocystées). Ann Sci Nat Bot Ser 7 15, 263-368; 16, 91-264.
12. Hamamoto, M. & Nakase, T. (1995). Ballistosporous yeasts found on the surface of plant materials collected in New Zealand. 1. Six new species in the genus Sporobolomyces. Antonie van Leeuwenhoek 67, 151-171.
13. Hoshaw, R. & Rosowski, J. R. (1973). Methods for microscopic algae. In Handbook of Phycological Methods. Culture Methods and Growth Measurements, pp. 53-68. Edited by J. R. Stein. London: Cambridge University Press.
14. Kenyon, C. N. (1972). Fatty acid composition of unicellular strains of blue-green algae. J Bacterial 109, 827-834.
15. Kenyon, C. N., Rippka, R. & Stanier, R. Y. (1972). Fatty acid composition and physiological properties of some filamentous blue-green algae. Arch Mikrobiol 83, 216-236.
16. Komárek, J. (1958). Die taxonomische Revision der planktischen Blaualgen der Tschechoslowakei. In Algologische Studien, pp. 10-206. Edited by J. Komárek & H. Ettl. Prague: Naklad CSAV.
17. Kützing, T. F. (1849). Species Algarum. Leipzig: F. A. Brockhaus.
18. Lemmerman, E. (1907 or 1910). Algen I. (Shizophyceen, Flagellaten, Peridineen). In Kryptogamenflora der Mark Brandenburg, vol. 3.
19. Li, R., Yokota, A., Sugiyama, J., Watanabe, M., Hiroki, M. & Watanabe, M. M. (1998). Chemotaxonomy of planktonic cyanobacteria based on non-polar and 3-hydroxy fatty acid composition. Phycol Res 46, 21-28.
20. Lund, J. W. G. (1955). Contributions to our knowledge of British algae. XIV. Three new species from the English Lake District. Hydrobiologia 7, 219-229.
21. Meffert, M.-E. (1987). Planktonic unsheathed filaments (Cyanophyceae) with polar and central gas-vacuoles. I. Their morphology and taxonomy. Arch Hydrobiol Suppl 76, 315-346.
22. Meffert, M.-E. (1988). Limnothrix Meffert nov. gen. The unsheathed planktonic cyanophycean filaments with polar and central gas vacuoles. Arch Hydrobiol Suppl 80, 1-4 (Algol Stud 50-53, 269-276).
23. Murata, N., Wada, H. & Gomboz, Z. (1992). Modes of fatty-acid desaturation in cyanobacteria. Plant Cell Physiol 33, 933-941.
24. Otsuka, S., Suda, S., Li, R., Watanabe, M., Oyaizu, H., Matsumoto, S. & Watanabe, M. M. (1998). 16S rDNA sequences and phylogenetic analyses of Microcystis strains with and without phycoerythrin. FEMS Microbial Lett 164, 119-124.
25. Palinska, K. A., Liesack, W., Rhiel, E. & Krumbein, W. E. (1996). Phenotype variability of identical genotypes: the need for a combined approach in cyanobacterial taxonomy demonstrated on Merismopedia-like isolates. Arch Microbial 166, 224-233.
26. Persson, P.-E. (1996). Cyanobacteria and off-flavours. Phycologia 35 (Suppl. 6), 168-171.
27. Pringsheim, E. G. (1965). Oscillatoria agardhii var. suspensa nov. var. Kleine Mitteilungen über Flagellaten und Algen. X. Arch Mikrobiol 50, 401-413.
28. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
29. Skuja, H. (1948). Taxonomie des Phytoplanktons einiger Seen in Uppland, Schweden. Symb Bot Uppsala 9 (3), 1-399.
30. Skuja, H. (1956). Taxonomische und biologische Studien über das Phytoplankton schwedischer Binnengewässer. Nova Acta Reg Soc Sci Uppsala Ser 4 16 (3), 1-404.
31. Skulberg, O. M. (1990). Culture Collection of Algae, Catalogue of Strains, 1990 edn. Oslo: Norwegian Institute for Water Research.
32. Skulberg, O. M. & Skulberg, R. (1985). Planktonic species of Oscillatoria (Cyanophyceae) from Norway. Characterisation and classification. Arch Hydrobiol Suppl 71 (Algol Stud 38/39), 157-174.
33. Skulberg, O. M. & Skulberg, R. (1991). A comparative investigation and taxonomic relationships of Tychonema tennis and Tychonema bourrellyi. Arch Hydrobiol Algol Stud 64, 271-279.
34. Stanier, R. Y., Sistrom, W. R., Hansen, T. A. & 9 other authors (1978). Proposal to place the nomenclature of the cyanobacteria (blue-green algae) under the rules of the International Code of Nomenclature of Bacteria. Int J Syst Bacteriol 28, 335-336.
35. Suda, S., Liu, Y., He, J., Hu, Z., Hiroki, M. & Watanabe, M. M. (1998). Morphological, biochemical and physiological characteristics of Lyngbya hieronymusii var. hieronymusii (Oscillatoriales, Cyanobacteria). Phycol Res 46 (Suppl.), 51-55.
36. Swofford, D. L. (1999). PAUP*: phylogenetic analysis using parsimony (* and other methods), version 4.0. Program and Documentation. Sunderland, MA: Sinauer.
37. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
38. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
39. Tompkins, J., De Ville, M. M., Day, J. G. & Turner, M. F. (1995). Culture Collection of Algae and Protozoa, Catalogue of Strains. Ambleside, UK: Natural Environmental Research Council.
40. Turner, S. (1997). Molecular systematics of oxygenic photosynthetic bacteria. Plant Syst Evol Suppl. 11, 13-52.
41. Vandamme, P., Pot, B., Gillis, M., De Vos, P., Kersters, K. & Swings, J. (1996). Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbial Rev 60, 407-438.
42. Van de Peer, Y., Jansen, J., De Rijk, P. & De Wachter, R. (1997). Database on the structure of small ribosomal subunit RNA. Nucleic Acids Res 25, 111-116.
43. Van Goor, A. C. J. (1918). Zur Kenntnis der Oscillatoriaceen. Recl Trav Bot Neerl 15, 256-263.
44. Watanabe, M. M. & Hiroki, M. (1997). NIES Collection. List of Strains, Algae and Protozoa, 5th edn. Ibaraki: National Institute for Environmental Studies, Environmental Agency.
45. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacterial 37, 463-464.
46. Woloszynska, J. (1912). Das Phytoplankton einiger javanischer Seen, mit Berücksichtigung des Sawa-Planktons. Bull Acad Sci Cracovie B 1921, 649-709.