-
2
-
-
0031569882
-
Crystal structure of the chemotaxis receptor methyltransferase CheR suggests a conserved structural motif for binding S-adenosylmethionine
-
Djordjevic, S., and Stock, A. M. (1997) Crystal structure of the chemotaxis receptor methyltransferase CheR suggests a conserved structural motif for binding S-adenosylmethionine. Structure 5, 545-558 (Pubitemid 27191230)
-
(1997)
Structure
, vol.5
, Issue.4
, pp. 545-558
-
-
Djordjevic, S.1
Stock, A.M.2
-
3
-
-
0036917889
-
SAM (dependent) I AM: The S-adenosylmethionine-dependent methyltransferase fold
-
Martin, J. L., and McMillan, F. M. (2002) SAM (dependent) I AM: the S-adenosylmethionine-dependent methyltransferase fold. Curr. Opin. Struct. Biol. 12, 783-793
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 783-793
-
-
Martin, J.L.1
McMillan, F.M.2
-
4
-
-
0028956315
-
Universal catalytic domain structure of AdoMet-dependent methyltransferases
-
Schluckebier, G., O'Gara, M., Saenger, W., and Cheng, X. (1995) Universal catalytic domain structure of AdoMet-dependent methyltransferases. J. Mol. Biol. 247, 16-20
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 16-20
-
-
Schluckebier, G.1
O'Gara, M.2
Saenger, W.3
Cheng, X.4
-
5
-
-
0038374971
-
Many paths to methyltransfer: A chronicle of convergence
-
Schubert, H. L., Blumenthal, R. M., and Cheng, X. (2003) Many paths to methyltransfer: a chronicle of convergence. Trends Biochem. Sci. 28, 329-335
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 329-335
-
-
Schubert, H.L.1
Blumenthal, R.M.2
Cheng, X.3
-
6
-
-
1642284876
-
Automated identification of putative methyltransferases from genomic open reading frames
-
Katz, J. E., Dlakić, M., and Clarke, S. (2003) Automated identification of putative methyltransferases from genomic open reading frames. Mol. Cell. Proteomics 2, 525-540
-
(2003)
Mol. Cell. Proteomics
, vol.2
, pp. 525-540
-
-
Katz, J.E.1
Dlakić, M.2
Clarke, S.3
-
7
-
-
0028179364
-
Widespread occurrence of three sequence motifs in diverse S-adenosylmethionine-dependent methyltransferases suggests a common structure for these enzymes
-
Kagan, R. M., and Clarke, S. (1994) Widespread occurrence of three sequence motifs in diverse S-adenosylmethionine-dependent methyltransferases suggests a common structure for these enzymes. Arch. Biochem. Biophys. 310, 417-427
-
(1994)
Arch. Biochem. Biophys.
, vol.310
, pp. 417-427
-
-
Kagan, R.M.1
Clarke, S.2
-
8
-
-
0033534476
-
S-Adenosylmethionine-dependent methylation in Saccharomyces cerevisiae. Identification of a novel protein arginine methyltransferase
-
Niewmierzycka, A., and Clarke, S. (1999) S-Adenosylmethionine-dependent methylation in Saccharomyces cerevisiae. Identification of a novel protein arginine methyltransferase. J. Biol. Chem. 274, 814-824
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 814-824
-
-
Niewmierzycka, A.1
Clarke, S.2
-
9
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
DOI 10.1093/nar/gki408
-
Söding, J., Biegert, A., and Lupas, A. N. (2005) The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 33, W244-248 (Pubitemid 44529917)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS
-
-
Soding, J.1
Biegert, A.2
Lupas, A.N.3
-
10
-
-
3042818018
-
The international protein index: An integrated database for proteomics experiments
-
DOI 10.1002/pmic.200300721
-
Kersey, P. J., Duarte, J., Williams, A., Karavidopoulou, Y., Bimey, E., and Apweiler, R. (2004) The International Protein Index: an integrated database for proteomics experiments. Proteomics 4, 1985-1988 (Pubitemid 38880363)
-
(2004)
Proteomics
, vol.4
, Issue.7
, pp. 1985-1988
-
-
Kersey, P.J.1
Duarte, J.2
Williams, A.3
Karavidopoulou, Y.4
Birney, E.5
Apweiler, R.6
-
11
-
-
35748937331
-
Construction, visualisation, and clustering of transcription networks from microarray expression data
-
Freeman, T. C., Goldovsky, L., Brosch, M., van Dongen, S., Mazière, P., Grocock, R. J., Freilich, S., Thornton, J., and Enright, A. J. (2007) Construction, visualisation, and clustering of transcription networks from microarray expression data. PLoS Comput. Biol. 3, 2032-2042
-
(2007)
PLoS Comput. Biol.
, vol.3
, pp. 2032-2042
-
-
Freeman, T.C.1
Goldovsky, L.2
Brosch, M.3
Van Dongen, S.4
Mazière, P.5
Grocock, R.J.6
Freilich, S.7
Thornton, J.8
Enright, A.J.9
-
12
-
-
0030612472
-
Structure of Pvull DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment
-
DOI 10.1093/nar/25.14.2702
-
Gong, W., O'Gara, M., Blumenthal, R. M., and Cheng, X. (1997) Structure of Pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment. Nucleic Acids Res. 25, 2702-2715 (Pubitemid 27299782)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.14
, pp. 2702-2715
-
-
Gong, W.1
O'Gara, M.2
Blumenthal, R.M.3
Cheng, X.4
-
13
-
-
0038629269
-
Structures along the catalytic pathway of PrmC/HemK, an N5-glutamine AdoMet-dependent methyltransferase
-
Schubert, H. L., Phillips, J. D., and Hill, C. P. (2003) Structures along the catalytic pathway of PrmC/HemK, an N5-glutamine AdoMet-dependent methyltransferase. Biochemistry 42, 5592-5599
-
(2003)
Biochemistry
, vol.42
, pp. 5592-5599
-
-
Schubert, H.L.1
Phillips, J.D.2
Hill, C.P.3
-
14
-
-
34547829268
-
Functional specialization of domains tandemly duplicated within 16S rRNA methyltransferase RsmC
-
DOI 10.1093/nar/gkm411
-
Sunita, S., Purta, E., Durawa, M., Tkaczuk, K. L., Swaathi, J., Bujnicki, J. M., and Sivaraman, J. (2007) Functional specialization of domains tandemly duplicated within 16S rRNA methyltransferase RsmC. Nucleic Acids Res. 35, 4264-4274 (Pubitemid 47244581)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.13
, pp. 4264-4274
-
-
Sunita, S.1
Purta, E.2
Durawa, M.3
Tkaczuk, K.L.4
Swaathi, J.5
Bujnicki, J.M.6
Sivaraman, J.7
-
15
-
-
3042513877
-
Structural characterization and comparative phylogenetic analysis of Escherichia coli HemK, a protein (N5)-glutamine methyltransferase
-
Yang, Z., Shipman, L., Zhang, M., Anton, B. P., Roberts, R. J., and Cheng, X. (2004) Structural characterization and comparative phylogenetic analysis of Escherichia coli HemK, a protein (N5)-glutamine methyltransferase. J. Mol. Biol. 340, 695-706
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 695-706
-
-
Yang, Z.1
Shipman, L.2
Zhang, M.3
Anton, B.P.4
Roberts, R.J.5
Cheng, X.6
-
16
-
-
0028010888
-
Hhal methyltransferase flips its target base out of the DNA helix
-
DOI 10.1016/0092-8674(94)90342-5
-
Klimasauskas, S., Kumar, S., Roberts, R. J., and Cheng, X. (1994) Hhal methyltransferase flips its target base out of the DNA helix. Cell 76, 357-369 (Pubitemid 24046697)
-
(1994)
Cell
, vol.76
, Issue.2
, pp. 357-369
-
-
Klimasauskas, S.1
Kumar, S.2
Roberts, R.J.3
Cheng, X.4
-
17
-
-
0034679591
-
Crystal structure of the conserved core of protein arginine methyltransferase PRMT3
-
Zhang, X., Zhou, L., and Cheng, X. (2000) Crystal structure of the conserved core of protein arginine methyltransferase PRMT3. EMBO J. 19, 3509-3519 (Pubitemid 30462110)
-
(2000)
EMBO Journal
, vol.19
, Issue.14
, pp. 3509-3519
-
-
Zhang, X.1
Zhou, L.2
Cheng, X.3
-
18
-
-
33747823564
-
MEME: Discovering and analyzing DNA and protein sequence motifs
-
DOI 10.1093/nar/gkl198
-
Bailey, T. L., Williams, N., Misleh, C., and Li, W. W. (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res. 34, W369-373 (Pubitemid 44529795)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB. SERV. ISS
-
-
Bailey, T.L.1
Williams, N.2
Misleh, C.3
Li, W.W.4
-
19
-
-
0031877016
-
Combining evidence using p-values: Application to sequence homology searches
-
Bailey, T. L., and Gribskov, M. (1998) Combining evidence using p-values: application to sequence homology searches. Bioinformatics 14, 48-54
-
(1998)
Bioinformatics
, vol.14
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
20
-
-
85047691317
-
CBS domains form energy-sensing modules whose binding of adenosine ligands is disrupted by disease mutations
-
Scott, J. W., Hawley, S. A., Green, K. A., Anis, M., Stewart, G., Scullion, G. A., Norman, D. G., and Hardie, D. G. (2004) CBS domains form energy-sensing modules whose binding of adenosine ligands is disrupted by disease mutations. J. Clin. Investig. 113, 274-284
-
(2004)
J. Clin. Investig.
, vol.113
, pp. 274-284
-
-
Scott, J.W.1
Hawley, S.A.2
Green, K.A.3
Anis, M.4
Stewart, G.5
Scullion, G.A.6
Norman, D.G.7
Hardie, D.G.8
-
21
-
-
0027497266
-
The Escherichia coli cysG gene encodes the multifunctional protein, siroheme synthase
-
DOI 10.1016/0014-5793(93)80438-Z
-
Spencer, J. B., Stolowich, N. J., Roessner, C. A., and Scott, A. I. (1993) The Escherichia coli cysG gene encodes the multifunctional protein, siroheme synthase. FEBS Lett. 335, 57-60 (Pubitemid 23347735)
-
(1993)
FEBS Letters
, vol.335
, Issue.1
, pp. 57-60
-
-
Spencer, J.B.1
Stolowich, N.J.2
Roessner, C.A.3
Scott, A.I.4
-
22
-
-
0031039128
-
Spermidine biosynthesis in Saccharomyces cerevisae: Polyamine requirement of a null mutant of the SPE3 gene (spermidine synthase)
-
DOI 10.1016/S0378-1119(96)00660-9, PII S0378111996006609
-
Hamasaki-Katagiri, N., Tabor, C. W., and Tabor, H. (1997) Spermidine biosynthesis in Saccharomyces cerevisiae: polyamine requirement of a null mutant of the SPE3 gene (spermidine synthase). Gene 187, 35-43 (Pubitemid 27110432)
-
(1997)
Gene
, vol.187
, Issue.1
, pp. 35-43
-
-
Hamasaki-Katagiri, N.1
Tabor, C.W.2
Tabor, H.3
-
23
-
-
18344418431
-
Spermine is not essential for growth of Saccharomyces cerevisiae: Identification of the SPE4 gene (spermine synthase) and characterization of a spe4 deletion mutant
-
DOI 10.1016/S0378-1119(98)00027-4, PII S0378111998000274
-
Hamasaki-Katagiri, N., Katagiri, Y., Tabor, C. W., and Tabor, H. (1998) Spermine is not essential for growth of Saccharomyces cerevisiae: identification of the SPE4 gene (spermine synthase) and characterization of a spe4 deletion mutant. Gene 210, 195-201 (Pubitemid 28178414)
-
(1998)
Gene
, vol.210
, Issue.2
, pp. 195-201
-
-
Hamasaki-Katagiri, N.1
Katagiri, Y.2
Tabor, C.W.3
Tabor, H.4
-
24
-
-
33646778150
-
Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA
-
DOI 10.1038/sj.emboj.7601105, PII 7601105
-
Noma, A., Kirino, Y., Ikeuchi, Y., and Suzuki, T. (2006) Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA. EMBO J. 25, 2142-2154 (Pubitemid 43756230)
-
(2006)
EMBO Journal
, vol.25
, Issue.10
, pp. 2142-2154
-
-
Noma, A.1
Kirino, Y.2
Ikeuchi, Y.3
Suzuki, T.4
-
25
-
-
58149287683
-
In silico analysis of methyltransferases domains involved in biosynthesis of secondary metabolites
-
Ansari, M. Z., Sharma, J., Gokhale, R. S., and Mohanty, D. (2008) In silico analysis of methyltransferases domains involved in biosynthesis of secondary metabolites. BMC Bioinformatics 9, 454
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 454
-
-
Ansari, M.Z.1
Sharma, J.2
Gokhale, R.S.3
Mohanty, D.4
-
26
-
-
46749130169
-
Identification of a novel N-terminal hydrophobic sequence that targets proteins to lipid droplets
-
DOI 10.1242/jcs.012013
-
Zehmer, J. K., Bartz, R., Liu, P., and Anderson, R. G. (2008) Identification of a novel N-terminal hydrophobic sequence that targets proteins to lipid droplets. J. Cell Sci. 121, 1852-1860 (Pubitemid 351943378)
-
(2008)
Journal of Cell Science
, vol.121
, Issue.11
, pp. 1852-1860
-
-
Zehmer, J.K.1
Bartz, R.2
Liu, P.3
Anderson, R.G.W.4
-
27
-
-
0345060040
-
Novel methyltransferase for modified uridine residues at the wobble position of tRNA
-
Kalhor, H. R., and Clarke, S. (2003) Novel methyltransferase for modified uridine residues at the wobble position of tRNA. Mol. Cell. Biol. 23, 9283-9292
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 9283-9292
-
-
Kalhor, H.R.1
Clarke, S.2
-
28
-
-
51149098989
-
The crystal structure of mammalian fatty acid synthase
-
Maier, T., Leibundgut, M., and Ban, N. (2008) The crystal structure of mammalian fatty acid synthase. Science 321, 1315-1322
-
(2008)
Science
, vol.321
, pp. 1315-1322
-
-
Maier, T.1
Leibundgut, M.2
Ban, N.3
-
29
-
-
5644261221
-
Structure of the conserved core of the yeast Dot1p, a nucleosomal histone H3 lysine 79 methyltransferase
-
Sawada, K., Yang, Z., Horton, J. R., Collins, R. E., Zhang, X., and Cheng, X. (2004) Structure of the conserved core of the yeast Dot1p, a nucleosomal histone H3 lysine 79 methyltransferase. J. Biol. Chem. 279, 43296-43306
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 43296-43306
-
-
Sawada, K.1
Yang, Z.2
Horton, J.R.3
Collins, R.E.4
Zhang, X.5
Cheng, X.6
-
30
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G. E., Hon, G., Chandonia, J. M., and Brenner, S. E. (2004) WebLogo: a sequence logo generator. Genome Res. 14, 1188-1190
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
|