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Volumn 10, Issue 7, 2009, Pages 1187-1197

Rapid and cost-effective SNP detection method: Application of SmartAmp2 to pharmacogenomics research

Author keywords

ABCB1; ABCC11; CYP2C19; CYP2C9; Individualized medicine; MutS; Pharmacogenomics; SNP; UGT1A1; VKORC1

Indexed keywords

ABC TRANSPORTER; ABC TRANSPORTER C11; ADENINE; ARGININE; CYTOCHROME P450 2C18; CYTOCHROME P450 2C19; CYTOCHROME P450 2C8; CYTOCHROME P450 2C9; CYTOCHROME P450 2D6; DNA; GLUCURONOSYLTRANSFERASE 1A1; GLYCINE; GLYCOPROTEIN P; GUANINE; IRINOTECAN; K RAS PROTEIN; MENADIONE EPOXIDE REDUCTASE; MULTIDRUG RESISTANCE PROTEIN 1; OXIDOREDUCTASE; PROTEIN MUTS; UNCLASSIFIED DRUG; WARFARIN;

EID: 70449482113     PISSN: 14622416     EISSN: 17448042     Source Type: Journal    
DOI: 10.2217/pgs.09.39     Document Type: Article
Times cited : (30)

References (53)
  • 1
    • 35748961114 scopus 로고    scopus 로고
    • Identifying genetic risk factors for serious adverse drug reactions: Current progress and challenges
    • Comprehensive review article addressing the current status of genotyping to prevent drug-induced serious adverse reactions
    • Wilke RA, Lin DW, Roden DM et al.: Identifying genetic risk factors for serious adverse drug reactions: current progress and challenges. Nat. Rev. Drug Discov. 6, 904-916 (2007). ■ Comprehensive review article addressing the current status of genotyping to prevent drug-induced serious adverse reactions.
    • (2007) Nat. Rev. Drug Discov. , vol.6 , pp. 904-916
    • Wilke, R.A.1    Lin, D.W.2    Roden, D.M.3
  • 2
    • 46449123868 scopus 로고    scopus 로고
    • Creating and evaluating genetic tests predictive of drug response
    • Weiss ST, McLeod HL, Flockert DA et al.: Creating and evaluating genetic tests predictive of drug response. Nat. Rev. Drug Discov. 7, 568-574 (2008).
    • (2008) Nat. Rev. Drug Discov. , vol.7 , pp. 568-574
    • Weiss, S.T.1    McLeod, H.L.2    Flockert, D.A.3
  • 3
    • 57149130819 scopus 로고    scopus 로고
    • Drug therapy and personalized health care: Pharmacogenomics in perspective
    • Sadee W: Drug therapy and personalized health care: pharmacogenomics in perspective. Pharm. Res. 25(12), 2713-2719 (2008).
    • (2008) Pharm. Res. , vol.25 , Issue.12 , pp. 2713-2719
    • Sadee, W.1
  • 6
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • Human Genome Sequencing Consortium
    • Human Genome Sequencing Consortium: Finishing the euchromatic sequence of the human genome. Nature 431, 931-945 (2004).
    • (2004) Nature , vol.431 , pp. 931-945
  • 8
    • 50149108146 scopus 로고    scopus 로고
    • Pharmacogenomic importance of ABCG2
    • Cusatis G, Sparreboom A: Pharmacogenomic importance of ABCG2. Pharmacogenomics 9(8), 1005-1009 (2008).
    • (2008) Pharmacogenomics , vol.9 , Issue.8 , pp. 1005-1009
    • Cusatis, G.1    Sparreboom, A.2
  • 10
    • 0347136017 scopus 로고    scopus 로고
    • Pharmacogenomics in drug development and regulatory decision-making: The genomic data submission (GDS) proposal
    • DOI 10.1517/phgs.5.1.25.25677
    • Salerno R, Lesko LJ: Pharmacogenomics in drug development and regulatory decision-making: the genomic data submission. Pharmacogenomics 5(1), 25-30 (2004). ■ Provides US FDA draft guidance for volunteer submission of pharmacogenomic data. (Pubitemid 38088478)
    • (2004) Pharmacogenomics , vol.5 , Issue.1 , pp. 25-30
    • Salerno, R.A.1    Lesko, L.J.2
  • 11
    • 3543145938 scopus 로고    scopus 로고
    • Pharmacogenomic data: FDA voluntary and required submission guidance
    • DOI 10.1517/14622416.5.5.503
    • Salerno R, Lesko LJ: Pharmacogenomic data: FDA voluntary and required submission guidance. Pharmacogenomics 5(5), 503-505 (2004). ■ Provides US FDA draft guidance for volunteer submission of pharmacogenomic data. (Pubitemid 39023066)
    • (2004) Pharmacogenomics , vol.5 , Issue.5 , pp. 503-505
    • Salerno, R.A.1    Lesko, L.J.2
  • 12
    • 3543063976 scopus 로고    scopus 로고
    • Pharmacogenomic data submissions to the FDA: Non-clinical case studies
    • DOI 10.1517/14622416.5.5.507
    • Leighton JK, Degeorge J, Jacobson-Kram D et al.: Pharmacogenomic data submission to FDA: non-clinical case studies. Pharmacogenomics 5(5), 507-511 (2004). ■ Provides US FDA draft guidance for volunteer submission of pharmacogenomic data. (Pubitemid 39023067)
    • (2004) Pharmacogenomics , vol.5 , Issue.5 , pp. 507-511
    • Leighton, J.K.1    Degeorge, J.2    Jacobson-Kram, D.3    MacGregor, J.4    Mendrick, D.5    Worobec, A.6
  • 13
    • 3543080360 scopus 로고    scopus 로고
    • Pharmacogenomic data submissions to the FDA: Clinical pharmacology case studies
    • DOI 10.1517/14622416.5.5.513
    • Ruano G, Collins JM, Dorner AJ et al.: Pharmacogenomic data submission to the FDA: clinical pharmacology case studies. Pharmacogenomics 5(5), 513-517 (2004). ■ Provides US FDA draft guidance for volunteer submission of pharmacogenomic data. (Pubitemid 39023068)
    • (2004) Pharmacogenomics , vol.5 , Issue.5 , pp. 513-517
    • Ruano, G.1    Collins, J.M.2    Dorner, A.J.3    Wang, S.-J.4    Guerciolini, R.5    Huang, S.-M.6
  • 15
    • 48249123433 scopus 로고    scopus 로고
    • Pharmacogenomic biomarker information in drug labels approved by the United States Food and Drug Administration: Prevalence of related drug use
    • Frueh FW, Amur S, Mummaneni P et al.: Pharmacogenomic biomarker information in drug labels approved by the United States Food and Drug Administration: prevalence of related drug use. Pharmacotherapy 28(8), 992-998 (2008).
    • (2008) Pharmacotherapy , vol.28 , Issue.8 , pp. 992-998
    • Frueh, F.W.1    Amur, S.2    Mummaneni, P.3
  • 16
    • 49949098665 scopus 로고    scopus 로고
    • The critical path of warfarin dosing: Finding an optimal dosing strategy using pharmacogenetics
    • Lesko LJ: The critical path of warfarin dosing: finding an optimal dosing strategy using pharmacogenetics. Clin. Pharmacol. Ther. 84(3), 301-303 (2008).
    • (2008) Clin. Pharmacol. Ther. , vol.84 , Issue.3 , pp. 301-303
    • Lesko, L.J.1
  • 17
    • 58849142451 scopus 로고    scopus 로고
    • A regulatory science perspective on warfarin therapy: A pharmacogenetic opportunity
    • Provides information on the US FDA perspective on pharmacogenetics-based warfarin dosing
    • Kim MJ, Huang SM, Meyer UA et al.: A regulatory science perspective on warfarin therapy: a pharmacogenetic opportunity. J. Clin. Pharmacol. 49(2), 138-146 (2009). ■ Provides information on the US FDA perspective on pharmacogenetics-based warfarin dosing.
    • (2009) J. Clin. Pharmacol. , vol.49 , Issue.2 , pp. 138-146
    • Kim, M.J.1    Huang, S.M.2    Meyer, U.A.3
  • 19
    • 0025744306 scopus 로고
    • Restriction fragment length polymorphism ana lysis using PCR coupled to restriction digests
    • Saperstein DA, Nickerson JM: Restriction fragment length polymorphism ana lysis using PCR coupled to restriction digests. Biotechniques 10(4), 488-489 (1991).
    • (1991) Biotechniques , vol.10 , Issue.4 , pp. 488-489
    • Saperstein, D.A.1    Nickerson, J.M.2
  • 20
    • 0025080352 scopus 로고
    • Genotyping of poor metabolisers of debrisoquine by allele-specific PCR amplification
    • DOI 10.1016/0140-6736(90)92086-W
    • Heim M, Meyer UA: Genotyping of poor metabolisers of debrisoquine by allele-specific PCR amplification. Lancet 336, 529-532 (1990). (Pubitemid 20278099)
    • (1990) Lancet , vol.336 , Issue.8714 , pp. 529-532
    • Heim, M.1    Meyer, U.A.2
  • 21
    • 0034093134 scopus 로고    scopus 로고
    • Electrophoretic detection of single-nucleotide polymorphisms
    • See D, Kanazin V, Talbert H, Blake T: Electrophoretic detection of single-nucleotide polymorphisms. Biotechniques 28, 710-714 (2000).
    • (2000) Biotechniques , vol.28 , pp. 710-714
    • See, D.1    Kanazin, V.2    Talbert, H.3    Blake, T.4
  • 22
    • 0033967208 scopus 로고    scopus 로고
    • Single nucleotide polymorphism ana lysis by MALDI-TOF mass spectrometry
    • Griffin TJ, Smith LM: Single nucleotide polymorphism ana lysis by MALDI-TOF mass spectrometry. Trends Biotechnol. 18, 77-84 (2000).
    • (2000) Trends Biotechnol. , vol.18 , pp. 77-84
    • Griffin, T.J.1    Smith, L.M.2
  • 23
    • 0031734601 scopus 로고    scopus 로고
    • High level multiplex genotyping by MALDI-TOF mass spectrometry
    • DOI 10.1038/4328
    • Ross P, Hall L, Smirnov I, Haff L: High level multiplex genotyping by MALDI-TOF mass spectrometry. Nat. Biotechnol. 16, 1347-1351 (1998). (Pubitemid 28547446)
    • (1998) Nature Biotechnology , vol.16 , Issue.13 , pp. 1347-1351
    • Ross, P.1    Hall, L.2    Smirnov, I.3    Haff, L.4
  • 24
    • 0028857772 scopus 로고
    • Use of a fluorogenic probe in a PCR-based assay for the detection of Listeria monocytogenes
    • Bassler HA, Flood SJ, Livak KJ et al.: Use of a fluorogenic probe in a PCR-based assay for the detection of Listeria monocytogenes. Appl. Environ. Microbiol. 61(10), 3724-3728 (1995).
    • (1995) Appl. Environ. Microbiol. , vol.61 , Issue.10 , pp. 3724-3728
    • Bassler, H.A.1    Flood, S.J.2    Livak, K.J.3
  • 25
    • 0033006003 scopus 로고    scopus 로고
    • Allelic discrimination using fluorogenic probes and 5′ nuclease assay
    • Livak KJ: Allelic discrimination using fluorogenic probes and 5′ nuclease assay. Genet Anal. 14(5-6), 143-149 (1999).
    • (1999) Genet Anal. , vol.14 , Issue.5-6 , pp. 143-149
    • Livak, K.J.1
  • 26
    • 0032998425 scopus 로고    scopus 로고
    • Polymorphism identification and quantitative detection of genomic DNA by invasive cleavage of oligonucleotide probes
    • Lymichev V, Mast AL, Hall JG et al.: Polymorphism identification and quantitative detection of genomic DNA by invasive cleavage of oligonucleotide probes. Nat. Biotechnol. 17(3), 292-296 (1999).
    • (1999) Nat. Biotechnol. , vol.17 , Issue.3 , pp. 292-296
    • Lymichev, V.1    Mast, A.L.2    Hall, J.G.3
  • 28
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S, Skaletsky H: Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132, 365-386 (2000).
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 29
  • 31
    • 0027457034 scopus 로고
    • Risk factors for complications of chronic anticoagulation
    • Fihn SD, McDonell M, Martin D et al.: Risk factors for complications of chronic anticoagulation. Ann. Intem. Med. 118, 511-520 (1993).
    • (1993) Ann. Intem. Med. , vol.118 , pp. 511-520
    • Fihn, S.D.1    McDonell, M.2    Martin, D.3
  • 32
    • 64149111606 scopus 로고    scopus 로고
    • Rapid SNP detection of the cytochrome P-450 (CYP) 2C9 and the vitamin K oxide reductase (VKORC1) gene for the warfarin dose adjustment by Smart-Amplification process version 2
    • Aomori T, Yamamoto K, Oguchi-Katayama A et al.: Rapid SNP detection of the cytochrome P-450 (CYP) 2C9 and the vitamin K oxide reductase (VKORC1) gene for the warfarin dose adjustment by Smart-Amplification process version 2. Clin. Chem. 55, 804-812 (2009).
    • (2009) Clin. Chem. , vol.55 , pp. 804-812
    • Aomori, T.1    Yamamoto, K.2    Oguchi-Katayama, A.3
  • 34
    • 26444594410 scopus 로고    scopus 로고
    • Clinical pharmacogenetics of irinotecan (CPT-11)
    • Comprehensive review article addressing the genetic polymorphisms of UDPglucuronosyltransferase gene and irinotecan-induced adverse reactions
    • Ando Y, Hasegawa Y: Clinical pharmacogenetics of irinotecan (CPT-11). Drug Metab. Rev. 37, 565-574 (2005). ■ Comprehensive review article addressing the genetic polymorphisms of UDPglucuronosyltransferase gene and irinotecan-induced adverse reactions.
    • (2005) Drug Metab. Rev. , vol.37 , pp. 565-574
    • Ando, Y.1    Hasegawa, Y.2
  • 35
    • 4143101374 scopus 로고    scopus 로고
    • Relevance of different UGT1A1 polymorphisms in irinotecan-induced toxicity: A molecular and clinical study of 75 patients
    • Rouits E, Boisdron-Celle M, Dumont A, Guerin O, Morel A, Gamelin E: Relevance of different UGT1A1 polymorphisms in irinotecan-induced toxicity: a molecular and clinical study of 75 patients. Clin. Cancer Res. 10, 5151-5159 (2004).
    • (2004) Clin. Cancer Res. , vol.10 , pp. 5151-5159
    • Rouits, E.1    Boisdron-Celle, M.2    Dumont, A.3    Guerin, O.4    Morel, A.5    Gamelin, E.6
  • 36
    • 0036025450 scopus 로고    scopus 로고
    • UGT1A1*28 polymorphism as a determinant of irinotecan disposition and adverse reactions
    • Iyer L, Das S, Janisch L et al.: UGT1A1*28 polymorphism as a determinant of irinotecan disposition and adverse reactions. Pharmacogenomics J. 2, 43-47 (2002).
    • (2002) Pharmacogenomics J. , vol.2 , pp. 43-47
    • Iyer, L.1    Das, S.2    Janisch, L.3
  • 37
    • 2342459714 scopus 로고    scopus 로고
    • Genetic variants in the UDPglucuronosyltransferase 1A1 gene predict the risk of severe neutropenia of irinotecan
    • Innocenti F, Undevia SD, Iyer L et al.: Genetic variants in the UDPglucuronosyltransferase 1A1 gene predict the risk of severe neutropenia of irinotecan. J. Clin. Oncol. 22, 1382-1388 (2004).
    • (2004) J. Clin. Oncol. , vol.22 , pp. 1382-1388
    • Innocenti, F.1    Undevia, S.D.2    Iyer, L.3
  • 42
    • 35748950424 scopus 로고    scopus 로고
    • Complete suppression of background amplification using competitive probe in a Smart-Amplification Process assay for microsatellite polymorphism genotyping of UGT1A1*28
    • Original article presenting SmartAmp2 method-based genotyping of UGT1A1*28
    • Watanabe J, Mitani Y, Kawai Y et al.: Complete suppression of background amplification using competitive probe in a Smart-Amplification Process assay for microsatellite polymorphism genotyping of UGT1A1*28. Biotechniques 43, 479-484, (2007). ■ Original article presenting SmartAmp2 method-based genotyping of UGT1A1*28.
    • (2007) Biotechniques , vol.43 , pp. 479-484
    • Watanabe, J.1    Mitani, Y.2    Kawai, Y.3
  • 43
    • 55949092040 scopus 로고    scopus 로고
    • Rapid screening assay for KRAS mutations by the modified smart amplification process
    • Original article presenting SmartAmp2 method-based detection of K-ras mutations
    • Tatsumi K, Mitani Y, Watanabe J et al.: Rapid screening assay for KRAS mutations by the modified smart amplification process. J. Mol. Diagn. 10(6), 520-526 (2008). ■ Original article presenting SmartAmp2 method-based detection of K-ras mutations.
    • (2008) J. Mol. Diagn. , vol.10 , Issue.6 , pp. 520-526
    • Tatsumi, K.1    Mitani, Y.2    Watanabe, J.3
  • 44
    • 34249058785 scopus 로고    scopus 로고
    • ABCB1 genotype and PGP expression, function and therapeutic drug response: A critical review and recommendations for future research
    • Comprehensive review article addressing the genetic polymorphisms of ABCB1 (P-glycoprotein/MDR1) and their impact on therapeutic drug response
    • Leschzinger GD, Andrew T, Pirmohamed M, Johnson MR: ABCB1 genotype and PGP expression, function and therapeutic drug response: a critical review and recommendations for future research. Pharmacogenomics J. 7, 154-179 (2007). ■ Comprehensive review article addressing the genetic polymorphisms of ABCB1 (P-glycoprotein/MDR1) and their impact on therapeutic drug response.
    • (2007) Pharmacogenomics J. , vol.7 , pp. 154-179
    • Leschzinger, G.D.1    Andrew, T.2    Pirmohamed, M.3    Johnson, M.R.4
  • 45
    • 34347363131 scopus 로고    scopus 로고
    • Quantitative SAR ana lysis and molecular dynamic simulation to functionally validate nonsynonymous polymorphisms of human ABC transporter ABCB1
    • Sakurai A, Onishi Y, Hirano H et al.: Quantitative SAR ana lysis and molecular dynamic simulation to functionally validate nonsynonymous polymorphisms of human ABC transporter ABCB1. Biochemistry 46(26), 7678-7693 (2007).
    • (2007) Biochemistry , vol.46 , Issue.26 , pp. 7678-7693
    • Sakurai, A.1    Onishi, Y.2    Hirano, H.3
  • 46
    • 34250904283 scopus 로고    scopus 로고
    • Triallelic single nucleotide polymorphisms and genotyping error in genetic epidemiology studies: MDR1 (ABCB1) G2677/T/A as an example
    • DOI 10.1158/1055-9965.EPI-06-0759
    • Hüebner C, Petermann I, Browning BL et al.: Triallelic single nucletotide polymorphisms and genotyping error in genetic epidemiology studies: MDR1 (ABCB1) G2677/T/A as an example. Cancer Epidemiol. Biomarkers. Prev. 16(6), 1185-1192 (2007). (Pubitemid 46984957)
    • (2007) Cancer Epidemiology Biomarkers and Prevention , vol.16 , Issue.6 , pp. 1185-1192
    • Huebner, C.1    Petermann, I.2    Browning, B.L.3    Shelling, A.N.4    Ferguson, L.R.5
  • 47
    • 0036074018 scopus 로고    scopus 로고
    • Mammalian ABC transporters in health and disease
    • DOI 10.1146/annurev.biochem.71.102301.093055
    • Borst P, Elferink RO: Mammalian ABC transporters in health and disease. Annu. Rev. Biochem. 71, 537-592 (2002). (Pubitemid 34800230)
    • (2002) Annual Review of Biochemistry , vol.71 , pp. 537-592
    • Borst, P.1    Oude Elferink, R.2
  • 48
    • 33644631507 scopus 로고    scopus 로고
    • A SNP in the ABCC11 gene is the determinant of human earwax type
    • Original paper addressing a unique SNP in ABCC11 (MRP8) and its physiological impact
    • Yoshiura K, Kinoshita A, Ishida T et al.: A SNP in the ABCC11 gene is the determinant of human earwax type. Nat. Genet. 38(3), 324-330 (2006). ■ Original paper addressing a unique SNP in ABCC11 (MRP8) and its physiological impact.
    • (2006) Nat. Genet. , vol.38 , Issue.3 , pp. 324-330
    • Yoshiura, K.1    Kinoshita, A.2    Ishida, T.3
  • 49
    • 67649354546 scopus 로고    scopus 로고
    • Earwax, osmidrosis, and breast cancer: Why does one SNP (538G>A) in the human ABC transporter ABCC11 gene determine earwax type?
    • Toyoda Y, Sakurai A, Mitani Y et al.: Earwax, osmidrosis, and breast cancer: why does one SNP (538G>A) in the human ABC transporter ABCC11 gene determine earwax type? FASEB J. 23(6), 2001-2013 (2009).
    • (2009) FASEB J. , vol.23 , Issue.6 , pp. 2001-2013
    • Toyoda, Y.1    Sakurai, A.2    Mitani, Y.3


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