-
1
-
-
51249119056
-
Biophysical controls on organic carbon fluxes in fluvial networks
-
Battin, T. J., L. A. Kaplan, S. Findlay, C. S. Hopkinson, E. Marti, A. I. Packman, J. D. Newbold, and F. Sabater. 2008. Biophysical controls on organic carbon fluxes in fluvial networks. Nat. Geosci. 1:95-100.
-
(2008)
Nat. Geosci.
, vol.1
, pp. 95-100
-
-
Battin, T.J.1
Kaplan, L.A.2
Findlay, S.3
Hopkinson, C.S.4
Marti, E.5
Packman, A.I.6
Newbold, J.D.7
Sabater, F.8
-
2
-
-
0141481286
-
Effects of current velocity on the nascent architecture of stream microbial biofilms
-
Battin, T. J., L. A. Kaplan, J. D. Newbold, X. Cheng, and C. Hansen. 2003. Effects of current velocity on the nascent architecture of stream microbial biofilms. Appl. Environ. Microbiol. 69:5443-5452.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5443-5452
-
-
Battin, T.J.1
Kaplan, L.A.2
Newbold, J.D.3
Cheng, X.4
Hansen, C.5
-
3
-
-
0345414146
-
Contributions of microbial biofilms to ecosystem processes in stream mesocosms
-
Battin, T. J., L. A. Kaplan, J. D. Newbold, and C. M. E. Hansen. 2003. Contributions of microbial biofilms to ecosystem processes in stream mesocosms. Nature 426:439-442.
-
(2003)
Nature
, vol.426
, pp. 439-442
-
-
Battin, T.J.1
Kaplan, L.A.2
Newbold, J.D.3
Hansen, C.M.E.4
-
4
-
-
33845625705
-
Microbial landscapes: New paths to biofilm research
-
Battin, T. J., W. T. Sloan, S. Kjelleberg, H. Daims, I. M. Head, T. P. Curtis, and L. Eberl. 2007. Microbial landscapes: new paths to biofilm research. Nat. Rev. Microbiol. 5:76-81.
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 76-81
-
-
Battin, T.J.1
Sloan, W.T.2
Kjelleberg, S.3
Daims, H.4
Head, I.M.5
Curtis, T.P.6
Eberl, L.7
-
5
-
-
46749150088
-
The tragedy of the uncommon: Understanding limitations in the analysis of microbial diversity
-
Bent, S. J., and L. J. Forney. 2008. The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity. ISME J. 2:689-695.
-
(2008)
ISME J.
, vol.2
, pp. 689-695
-
-
Bent, S.J.1
Forney, L.J.2
-
6
-
-
70350294356
-
Architectural differentiation reflects bacterial community structure in stream biofilms
-
in press
-
Besemer, K., I. Hödl, G. Singer, and T. J. Battin. Architectural differentiation reflects bacterial community structure in stream biofilms. ISME J., in press.
-
ISME J.
-
-
Besemer, K.1
Hödl, I.2
Singer, G.3
Battin, T.J.4
-
7
-
-
34547729638
-
Biophysical controls on community succession in stream biofilms
-
Besemer, K., G. Singer, R. Limberger, A. K. Chlup, G. Hochedlinger, I. Hödl, C. Baranyi, and T. J. Battin. 2007. Biophysical controls on community succession in stream biofilms. Appl. Environ. Microbiol. 73:4966-4974.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 4966-4974
-
-
Besemer, K.1
Singer, G.2
Limberger, R.3
Chlup, A.K.4
Hochedlinger, G.5
Hödl, I.6
Baranyi, C.7
Battin, T.J.8
-
8
-
-
34548235824
-
Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: Insights from simulated microbial communities
-
Blackwood, C. B., D. Hudleston, D. R. Zak, and J. S. Buyer. 2007. Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: insights from simulated microbial communities. Appl. Environ. Microbiol. 73:5276-5283.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5276-5283
-
-
Blackwood, C.B.1
Hudleston, D.2
Zak, D.R.3
Buyer, J.S.4
-
9
-
-
54549102367
-
Forward selection of explanatory variables
-
Blanchet, F. G., P. Legendre, and D. Borcard. 2008. Forward selection of explanatory variables. Ecology 89:2623-2632.
-
(2008)
Ecology
, vol.89
, pp. 2623-2632
-
-
Blanchet, F.G.1
Legendre, P.2
Borcard, D.3
-
10
-
-
0000635930
-
Similarity indices in community studies: Potential pitfalls
-
Bloom, S. A. 1981. Similarity indices in community studies: potential pitfalls. Mar. Ecol. Prog. Ser. 5:125-128.
-
(1981)
Mar. Ecol. Prog. Ser.
, vol.5
, pp. 125-128
-
-
Bloom, S.A.1
-
12
-
-
33846367103
-
Hydrodynamics of coupled flow above and below a sediment-water interface with triangular bedforms
-
Cardenas, M. B., and J. L. Wilson. 2007. Hydrodynamics of coupled flow above and below a sediment-water interface with triangular bedforms. Adv. Water Resour. 30:301-313.
-
(2007)
Adv. Water Resour.
, vol.30
, pp. 301-313
-
-
Cardenas, M.B.1
Wilson, J.L.2
-
13
-
-
0036162761
-
The influence of substrate heterogeneity on biofilm metabolism in a stream ecosystem
-
Cardinale, B. J., M. A. Palmer, C. M. Swan, S. Brooks, and N. L. Poff. 2002. The influence of substrate heterogeneity on biofilm metabolism in a stream ecosystem. Ecology 83:412-422.
-
(2002)
Ecology
, vol.83
, pp. 412-422
-
-
Cardinale, B.J.1
Palmer, M.A.2
Swan, C.M.3
Brooks, S.4
Poff, N.L.5
-
14
-
-
34547617665
-
Biogeography of bacterioplankton in lakes and streams of an Arctic tundra catchment
-
Crump, B. C., H. E. Adams, J. E. Hobbie, and G. W. Kling. 2007. Biogeography of bacterioplankton in lakes and streams of an Arctic tundra catchment. Ecology 88:1365-1378.
-
(2007)
Ecology
, vol.88
, pp. 1365-1378
-
-
Crump, B.C.1
Adams, H.E.2
Hobbie, J.E.3
Kling, G.W.4
-
16
-
-
34748886657
-
PAST: Paleontological statistics software package for education and data analysis
-
Hammer, Ø., D. A. T. Harper, and P. D. Ryan. 2001. PAST: paleontological statistics software package for education and data analysis. Palaeontol. Electron. 4:4A.
-
(2001)
Palaeontol. Electron.
, vol.4
-
-
Hammer, Ø.1
Harper, D.A.T.2
Ryan, P.D.3
-
17
-
-
0000006498
-
Diversity and evenness: A unifying notation and its consequences
-
Hill, M. O. 1973. Diversity and evenness: a unifying notation and its consequences. Ecology 54:427-432.
-
(1973)
Ecology
, vol.54
, pp. 427-432
-
-
Hill, M.O.1
-
18
-
-
33846215485
-
Metacommunities: A framework for large-scale community ecology
-
M. Holyoak, M. A. Leibold, and R. D. Holt (ed.), University of Chicago Press, Chicago, IL
-
Holyoak, M., M. A. Leibold, N. M. Mouquet, R. D. Holt, and M. F. Hoopes. 2005. Metacommunities: a framework for large-scale community ecology, p. 1-31. In M. Holyoak, M. A. Leibold, and R. D. Holt (ed.), Metacommunities. University of Chicago Press, Chicago, IL.
-
(2005)
Metacommunities
, pp. 1-31
-
-
Holyoak, M.1
Leibold, M.A.2
Mouquet, N.M.3
Holt, R.D.4
Hoopes, M.F.5
-
19
-
-
38449096471
-
Partitioning diversity into independent alpha and beta components
-
DOI 10.1890/06-1736.1
-
Jost, L. 2007. Partitioning diversity into independent alpha and beta components. Ecology 88:2427-2439. (Pubitemid 351345099)
-
(2007)
Ecology
, vol.88
, Issue.10
, pp. 2427-2439
-
-
Jost, L.1
-
20
-
-
0001857117
-
16S/23S rRNA sequencing
-
E. Stackebrandt and M. Goodfellow (ed.), John Wiley & Sons Inc., New York, NY
-
Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-176. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons Inc., New York, NY.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-176
-
-
Lane, D.J.1
-
21
-
-
0003127733
-
Information spiraling: Movement of bacteria and their genes in streams
-
Leff, L. G., J. V. McArthur, and L. J. Shimkets. 1992. Information spiraling: movement of bacteria and their genes in streams. Microb. Ecol. 24:11-24.
-
(1992)
Microb. Ecol.
, vol.24
, pp. 11-24
-
-
Leff, L.G.1
McArthur, J.V.2
Shimkets, L.J.3
-
22
-
-
54149105103
-
Studying beta diversity: Ecological variation partitioning by multiple regression and canonical analysis
-
Legendre, P. 2008. Studying beta diversity: ecological variation partitioning by multiple regression and canonical analysis. J. Plant Ecol. 1:3-8.
-
(2008)
J. Plant Ecol.
, vol.1
, pp. 3-8
-
-
Legendre, P.1
-
24
-
-
41649090665
-
Biogeography of bacterioplankton in inland waters
-
Logue, J. B., and E. S. Lindström. 2008. Biogeography of bacterioplankton in inland waters. Freshw. Rev. 1:99-114.
-
(2008)
Freshw. Rev.
, vol.1
, pp. 99-114
-
-
Logue, J.B.1
Lindström, E.S.2
-
25
-
-
34547782622
-
From metacommunities to metaecosystems
-
M. Holyoak, M. A. Leibold, and R. D. Holt (ed.), The University of Chicago Press, Chicago, IL
-
Loreau, M., N. M. Mouquet, and R. D. Holt. 2005. From metacommunities to metaecosystems, p. 418-438. In M. Holyoak, M. A. Leibold, and R. D. Holt (ed.), Metacommunities. The University of Chicago Press, Chicago, IL.
-
(2005)
Metacommunities
, pp. 418-438
-
-
Loreau, M.1
Mouquet, N.M.2
Holt, R.D.3
-
26
-
-
33947269742
-
Quantitative and qualitative β diversity measures lead to different insights into factors that structure microbial communities
-
Lozupone, C. A., M. Hamady, S. T. Kelley, and R. Knight. 2007. Quantitative and qualitative β diversity measures lead to different insights into factors that structure microbial communities. Appl. Environ. Microbiol. 73:1576-1585.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 1576-1585
-
-
Lozupone, C.A.1
Hamady, M.2
Kelley, S.T.3
Knight, R.4
-
27
-
-
0037225001
-
Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts
-
Lueders, T., and M. W. Friedrich. 2003. Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Appl. Environ. Microbiol. 69:320-326.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 320-326
-
-
Lueders, T.1
Friedrich, M.W.2
-
28
-
-
0014054519
-
The detection of disease clustering and a generalized regression approach
-
Mantel, N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27:209-220.
-
(1967)
Cancer Res.
, vol.27
, pp. 209-220
-
-
Mantel, N.1
-
29
-
-
31544448331
-
Microbial biogeography: Putting microorganisms on the map
-
Martiny, J. B. H., B. J. M. Bohannan, J. H. Brown, R. K. Colwell, J. A. Fuhrman, J. L. Green, M. C. Horner-Devine, M. Kane, J. A. Krumins, C. R. Kuske, P. J. Morin, S. Naeem, L. Øvreås, A.-L. Reysenbach, V. H. Smith, and J. T. Staley. 2006. Microbial biogeography: putting microorganisms on the map. Nat. Rev. Microbiol. 4:102-112.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.M.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
Horner-Devine, M.C.7
Kane, M.8
Krumins, J.A.9
Kuske, C.R.10
Morin, P.J.11
Naeem, S.12
Øvreås, L.13
Reysenbach, A.-L.14
Smith, V.H.15
Staley, J.T.16
-
30
-
-
0035133741
-
Horizontal and vertical complexity of attached and free-living bacteria of the eastern Mediterranean Sea, determined by 16S rDNA and 16S rRNA fingerprints
-
Moeseneder, M. M., C. Winter, and G. J. Herndl. 2001. Horizontal and vertical complexity of attached and free-living bacteria of the eastern Mediterranean Sea, determined by 16S rDNA and 16S rRNA fingerprints. Limnol. Oceanogr. 46:95-107.
-
(2001)
Limnol. Oceanogr.
, vol.46
, pp. 95-107
-
-
Moeseneder, M.M.1
Winter, C.2
Herndl, G.J.3
-
31
-
-
0034237348
-
Spatial patterns of seed dispersal, their determinants and consequences for recruitment
-
Nathan, R., and H. C. Muller-Landau. 2000. Spatial patterns of seed dispersal, their determinants and consequences for recruitment. Trends Ecol. Evol. 15:278-285.
-
(2000)
Trends Ecol. Evol.
, vol.15
, pp. 278-285
-
-
Nathan, R.1
Muller-Landau, H.C.2
-
32
-
-
0002239464
-
The relationship between biomass and volume of bacteria
-
P. F. Kemp, B. F. Sherr, E. B. Sherr, and J. J. Cole (ed.), Lewis Publishers, Boca Raton, FL
-
Norland, S. 1993. The relationship between biomass and volume of bacteria, p. 303-307. In P. F. Kemp, B. F. Sherr, E. B. Sherr, and J. J. Cole (ed.), Handbook of methods in aquatic microbial ecology. Lewis Publishers, Boca Raton, FL.
-
(1993)
Handbook of Methods in Aquatic Microbial Ecology
, pp. 303-307
-
-
Norland, S.1
-
33
-
-
43349092723
-
-
R package version 1.11-4
-
Oksanen, J., R. Kindt, P. Legendre, B. O'Hara, G. L. Simpson, and M. H. H. Stevenson. 2008. vegan: community ecology package, R package version 1.11-4. http://cran.r-project.org/.
-
(2008)
Vegan: Community Ecology Package
-
-
Oksanen, J.1
Kindt, R.2
Legendre, P.3
O'Hara, B.4
Simpson, G.L.5
Stevenson, M.H.H.6
-
34
-
-
34250678767
-
Algal communities in human-impacted stream ecosystems suffer beta-diversity decline
-
Passy, S. I., and F. G. Blanchet. 2007. Algal communities in human-impacted stream ecosystems suffer beta-diversity decline. Divers. Distrib. 13:670-679.
-
(2007)
Divers. Distrib.
, vol.13
, pp. 670-679
-
-
Passy, S.I.1
Blanchet, F.G.2
-
35
-
-
33845367389
-
Variation partitioning of species data matrices: Estimation and comparison of fractions
-
Peres-Neto, P. R., P. Legendre, S. Dray, and D. Borcard. 2006. Variation partitioning of species data matrices: estimation and comparison of fractions. Ecology 87:2614-2625.
-
(2006)
Ecology
, vol.87
, pp. 2614-2625
-
-
Peres-Neto, P.R.1
Legendre, P.2
Dray, S.3
Borcard, D.4
-
36
-
-
34347267668
-
Homogenization of regional river dynamics by dams and global biodiversity implications
-
Poff, N. L., J. D. Olden, D. M. Merritt, and D. M. Pepin. 2007. Homogenization of regional river dynamics by dams and global biodiversity implications. Proc. Natl. Acad. Sci. USA 104:5732-5737.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 5732-5737
-
-
Poff, N.L.1
Olden, J.D.2
Merritt, D.M.3
Pepin, D.M.4
-
38
-
-
0037436433
-
Coaggregation between freshwater bacteria within biofilm and planktonic communities
-
Rickard, A. H., A. J. McBain, R. G. Ledder, P. S. Handley, and P. Gilbert. 2003. Coaggregation between freshwater bacteria within biofilm and planktonic communities. FEMS Microbiol. Lett. 220:133-140.
-
(2003)
FEMS Microbiol. Lett.
, vol.220
, pp. 133-140
-
-
Rickard, A.H.1
McBain, A.J.2
Ledder, R.G.3
Handley, P.S.4
Gilbert, P.5
-
39
-
-
10444290565
-
Shear rate moderates community diversity in freshwater biofilms
-
Rickard, A. H., A. J. McBain, A. T. Stead, and P. Gilbert. 2004. Shear rate moderates community diversity in freshwater biofilms. Appl. Environ. Microbiol. 70:7426-7435.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 7426-7435
-
-
Rickard, A.H.1
McBain, A.J.2
Stead, A.T.3
Gilbert, P.4
-
40
-
-
33644843833
-
Quantifying the roles of immigration and chance in shaping prokaryote community structure
-
Sloan, W. T., M. Lunn, S. Woodcock, I. M. Head, S. Nee, and T. P. Curtis. 2006. Quantifying the roles of immigration and chance in shaping prokaryote community structure. Environ. Microbiol. 8:732-740.
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 732-740
-
-
Sloan, W.T.1
Lunn, M.2
Woodcock, S.3
Head, I.M.4
Nee, S.5
Curtis, T.P.6
-
41
-
-
3042690870
-
Are natural microcosms useful model systems for ecology?
-
Srivastava, D. S., J. Kolasa, J. Bengtsson, A. Gonzalez, S. P. Lawler, T. E. Miller, P. Munguia, T. Romanuk, D. C. Schneider, and M. K. Trzcinski. 2004. Are natural microcosms useful model systems for ecology? Trends Ecol. Evol. 19:379-384.
-
(2004)
Trends Ecol. Evol.
, vol.19
, pp. 379-384
-
-
Srivastava, D.S.1
Kolasa, J.2
Bengtsson, J.3
Gonzalez, A.4
Lawler, S.P.5
Miller, T.E.6
Munguia, P.7
Romanuk, T.8
Schneider, D.C.9
Trzcinski, M.K.10
-
43
-
-
0032832253
-
Opening the black box of soil microbial diversity
-
Tiedje, J. M., S. Asuming-Brempong, K. Nüsslein, T. L. Marsh, and S. J. Flynn. 1999. Opening the black box of soil microbial diversity. Appl. Soil Ecol. 13:109-122.
-
(1999)
Appl. Soil Ecol.
, vol.13
, pp. 109-122
-
-
Tiedje, J.M.1
Asuming-Brempong, S.2
Nüsslein, K.3
Marsh, T.L.4
Flynn, S.J.5
-
44
-
-
38049100699
-
The power of species sorting: Local factors drive bacterial community composition over a wide range of spatial scales
-
Van der Gucht, K., K. Cottenie, K. Muylaert, N. Vloemans, S. Cousin, S. Declerck, E. Jeppesen, J. M. Conde-Porcuna, K. Schwenk, G. Zwart, H. Degans, W. Vyverman, and L. DeMeester. 2007. The power of species sorting: local factors drive bacterial community composition over a wide range of spatial scales. Proc. Natl. Acad. Sci. USA 104:20404-20409.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 20404-20409
-
-
Van Der Gucht, K.1
Cottenie, K.2
Muylaert, K.3
Vloemans, N.4
Cousin, S.5
Declerck, S.6
Jeppesen, E.7
Conde-Porcuna, J.M.8
Schwenk, K.9
Zwart, G.10
Degans, H.11
Vyverman, W.12
Demeester, L.13
|