Using contextual information to clarify gene normalization ambiguity

2009 IEEE International Conference on Information Reuse and Integration, IRI 2009

Volumn , Issue , 2009, Pages 1-5

  Lai, Po Ting ^a   Bow, Yue Yang ^b   Huang, Chi Hsin ^b   Dai, Hong Jie ^b,c   Tsai, Richard Tzong Han ^a   Hsu, Wen Lian ^b,c  

^a YUAN ZE UNIVERSITY   (Taiwan)

^b INSTITUTE OF INFORMATION SCIENCE   (Taiwan)

^c NATIONAL TSING HUA UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMEDICAL LITERATURE; CONTEXTUAL INFORMATION; F-SCORE; TEST SETS; TISSUE TYPES;

INFORMATION USE;

EID: 70449341646     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IRI.2009.5211619     Document Type: Conference Paper

References (8)

1. T. Jenssen, A. Lagreid, J. Komorowski, and E. Hovig, "A literature network of human genes for high-throughput analysis of gene expression," Nature Genetics, vol. 28, pp. 21-28, 2001.
2. J. Crim, R. McDonald, and F. Pereira, "Automatically Annotating Documents with Normalized Gene Lists," BMC Bioinformatics, vol. 6, p. S13, 2005.
3. K. B. Cohen, M. Palmer, and L. Hunter, "Nominalization and alternations in biomedical language," PLoS ONE, vol. 3, p. e3158, 2008.
4. R. T.-H. Tsai, C.-L. Sung, H.-J. Dai, H.-C. Hung, T.-Y. Sung, and W.-L. Hsu, "NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition," BMC Bioinformatics, vol. 7, p. S11, 2006.
5. R. Durbin, Biological sequence analysis: Probabilistic models of proteins and nucleic acids: Cambridge university press, 1998.
6. L. Smith, L. Tanabe, R. Ando, C.-J. Kuo, I.-F. Chung, C.-N. Hsu, Y.-S. Lin, R. Klinger, C. Friedrich, K. Ganchev, M. Torii, H. Liu, B. Haddow, C. Struble, R. Povinelli, A. Vlachos, W. Baumgartner, L. Hunter, B. Carpenter, R. Tsai, H.-J. Dai, F. Liu, Y. Chen, C. Sun, S. Katrenko, P. Adriaans, C. Blaschke, R. Torres, M. Neves, P. Nakov, A. Divoli, M. Mana-Lopez, J. Mata, and W. J. Wilbur, "Overview of BioCreative II gene mention recognition," Genome Biology, vol. 9, p. S2, 2008.
7. A. Morgan, Z. Lu, X. Wang, A. Cohen, J. Fluck, P. Ruch, A. Divoli, K. Fundel, R. Leaman, J. Hakenberg, C. Sun, H.-h. Liu, R. Torres, M. Krauthammer, W. Lau, H. Liu, C.-N. Hsu, M. Schuemie, K. B. Cohen, and L. Hirschman, "Overview of BioCreative II gene normalization," Genome Biology, vol. 9, p. S3, 2008.
8. D. Maglott, J. Ostell, K. D. Pruitt, and T. Tatusova, "Entrez Gene: gene-centered information at NCBI," Nucl. Acids Res., vol. 33, pp. D54-58, January 1, 2005 2005.