메뉴 건너뛰기




Volumn 93, Issue 6, 2003, Pages 738-746

Analysis of genotypic diversity data for populations of microorganisms

Author keywords

Epidemiology; Microbial ecology; Population genetics

Indexed keywords


EID: 0038284927     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO.2003.93.6.738     Document Type: Article
Times cited : (348)

References (47)
  • 1
    • 0001016941 scopus 로고
    • Problems in the measurement of evenness in ecology
    • Alatalo, R. V. 1981. Problems in the measurement of evenness in ecology. Oikos 37:199-204.
    • (1981) Oikos , vol.37 , pp. 199-204
    • Alatalo, R.V.1
  • 2
    • 0028313448 scopus 로고
    • Race structure and dynamics in populations of Phytophthora infestans
    • Andrivon, D. 1994. Race structure and dynamics in populations of Phytophthora infestans. Can. J. Bot. 72:1681-1687.
    • (1994) Can. J. Bot. , vol.72 , pp. 1681-1687
    • Andrivon, D.1
  • 3
    • 0031968641 scopus 로고    scopus 로고
    • Genetic structure of Setosphaeria turcica populations in tropical and temperate climates
    • Borchart, D. S., Welz, H. G., and Geiger, H. H. 1998. Genetic structure of Setosphaeria turcica populations in tropical and temperate climates. Phytopathology 88:322-329.
    • (1998) Phytopathology , vol.88 , pp. 322-329
    • Borchart, D.S.1    Welz, H.G.2    Geiger, H.H.3
  • 4
    • 0038197649 scopus 로고    scopus 로고
    • Spatial and temporal variation of genetic marker patterns in Setosphaeria turcica populations from Kenya
    • Borchart, D. S., Welz, H. G., and Geiger, H. H. 1998. Spatial and temporal variation of genetic marker patterns in Setosphaeria turcica populations from Kenya. J. Phytopathol. 146:451-457.
    • (1998) J. Phytopathol. , vol.146 , pp. 451-457
    • Borchart, D.S.1    Welz, H.G.2    Geiger, H.H.3
  • 5
    • 0003373385 scopus 로고    scopus 로고
    • The choice of molecular marker methods for population genetic studies of plant pathogens
    • Brown, J. K. M. 1996. The choice of molecular marker methods for population genetic studies of plant pathogens. New Phytol. 133:183-195.
    • (1996) New Phytol. , vol.133 , pp. 183-195
    • Brown, J.K.M.1
  • 6
    • 0345466454 scopus 로고    scopus 로고
    • Genotypic diversity in barley powdery mildew populations in northern France
    • Caffier, V., Brändle, U. E., and Wolfe, M. S. 1999. Genotypic diversity in barley powdery mildew populations in northern France. Plant Pathol. 48:582-587.
    • (1999) Plant Pathol. , vol.48 , pp. 582-587
    • Caffier, V.1    Brändle, U.E.2    Wolfe, M.S.3
  • 7
    • 0027975332 scopus 로고
    • Genetic stability in a population of a plant pathogenic fungus over time
    • Chen, R. S., Boeger, J. M., and McDonald, B. A. 1994. Genetic stability in a population of a plant pathogenic fungus over time. Mol. Ecol. 3:209-218.
    • (1994) Mol. Ecol. , vol.3 , pp. 209-218
    • Chen, R.S.1    Boeger, J.M.2    McDonald, B.A.3
  • 8
    • 0029976261 scopus 로고    scopus 로고
    • Sexual reproduction plays a major role in the genetic structure of populations of the fungus Mycosphaerella graminicola
    • Chen, R. S., and McDonald, B. A. 1996. Sexual reproduction plays a major role in the genetic structure of populations of the fungus Mycosphaerella graminicola. Genetics 142:1119-1127.
    • (1996) Genetics , vol.142 , pp. 1119-1127
    • Chen, R.S.1    McDonald, B.A.2
  • 9
    • 0002710625 scopus 로고
    • The bootstrap and the jackknife: Describing the precision of ecological indices
    • Chapman and Hall, New York
    • Dixon, P. M. 1993. The bootstrap and the jackknife: Describing the precision of ecological indices. Pages 290-318 in: Design and Analysis of Ecological Experiments. Chapman and Hall, New York.
    • (1993) Design and Analysis of Ecological Experiments , pp. 290-318
    • Dixon, P.M.1
  • 10
    • 0001330158 scopus 로고
    • Diversity: A sampling study
    • Fager, E. W. 1972. Diversity: A sampling study. Am. Nat. 106:293-310.
    • (1972) Am. Nat. , vol.106 , pp. 293-310
    • Fager, E.W.1
  • 12
    • 0028006618 scopus 로고
    • Panglobal distribution of a single clonal lineage of the Irish potato famine fungus
    • Goodwin, S. B., Cohen, B. A., and Fry, W. E. 1994. Panglobal distribution of a single clonal lineage of the Irish potato famine fungus. Proc. Natl. Acad. Sci. USA 91:11591-11595.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 11591-11595
    • Goodwin, S.B.1    Cohen, B.A.2    Fry, W.E.3
  • 13
    • 0026770294 scopus 로고
    • Cloning and genetic analyses of two highly polymorphic, moderately repetitive nuclear DNAs from Phytophthora infestans
    • Goodwin, S. B., Drenth, A., and Fry, W. E. 1992. Cloning and genetic analyses of two highly polymorphic, moderately repetitive nuclear DNAs from Phytophthora infestans. Curr. Genet. 22:107-115.
    • (1992) Curr. Genet. , vol.22 , pp. 107-115
    • Goodwin, S.B.1    Drenth, A.2    Fry, W.E.3
  • 14
    • 0002571295 scopus 로고
    • Isozyme variation within and among populations of Rhynchosporium secalis in Europe, Australia and the United States
    • Goodwin, S. B., Saghai Maroof, M. A., Allard, R. W., and Webster, R. K. 1993. Isozyme variation within and among populations of Rhynchosporium secalis in Europe, Australia and the United States. Mycol. Res. 97:49-58.
    • (1993) Mycol. Res. , vol.97 , pp. 49-58
    • Goodwin, S.B.1    Saghai Maroof, M.A.2    Allard, R.W.3    Webster, R.K.4
  • 17
    • 0000006498 scopus 로고
    • Diversity and evenness: A unifying notation and its consequences
    • Hill, M. O. 1973. Diversity and evenness: A unifying notation and its consequences. Ecology 54:427-432.
    • (1973) Ecology , vol.54 , pp. 427-432
    • Hill, M.O.1
  • 18
    • 0000752502 scopus 로고
    • The nonconcept of species diversity: A critique and alternative parameters
    • Hurlbert, S. H. 1971. The nonconcept of species diversity: A critique and alternative parameters. Ecology 52:577-586.
    • (1971) Ecology , vol.52 , pp. 577-586
    • Hurlbert, S.H.1
  • 19
    • 0000293374 scopus 로고
    • Rarefaction, relative abundance, and diversity of avian communities
    • James, F. C., and Rathbun, S. 1981. Rarefaction, relative abundance, and diversity of avian communities. Auk 98:785-800.
    • (1981) Auk , vol.98 , pp. 785-800
    • James, F.C.1    Rathbun, S.2
  • 20
    • 0037859913 scopus 로고    scopus 로고
    • Difference and diversity of plant pathogen populations: A new approach for measuring
    • Kosman, E. 1996. Difference and diversity of plant pathogen populations: A new approach for measuring. Phytopathology 86:1152-1155.
    • (1996) Phytopathology , vol.86 , pp. 1152-1155
    • Kosman, E.1
  • 22
    • 0000574856 scopus 로고
    • Population structure of plant pathogenic fungi and bacteria
    • Leung, H., Nelson, R. J., and Leach, J. E. 1993. Population structure of plant pathogenic fungi and bacteria. Adv. Plant Pathol. 10:157-205.
    • (1993) Adv. Plant Pathol. , vol.10 , pp. 157-205
    • Leung, H.1    Nelson, R.J.2    Leach, J.E.3
  • 23
    • 0030471792 scopus 로고    scopus 로고
    • Diversity and multilocus genetic structure in populations of Cryphonectria parasitica
    • Liu, Y.-C., Cortesi, P., Double, M. L., Macdonald, W. L., and Milgroom, M G. 1996. Diversity and multilocus genetic structure in populations of Cryphonectria parasitica. Phytopathology 86:1344-1351.
    • (1996) Phytopathology , vol.86 , pp. 1344-1351
    • Liu, Y.-C.1    Cortesi, P.2    Double, M.L.3    Macdonald, W.L.4    Milgroom, M.G.5
  • 24
    • 0002000301 scopus 로고
    • Diurnal and seasonal fluctuations of organisms in a north Florida estuary
    • Livingston, R. J. 1976. Diurnal and seasonal fluctuations of organisms in a north Florida estuary. Estuarine Coastal Marine Sci. 4:373-400.
    • (1976) Estuarine Coastal Marine Sci. , vol.4 , pp. 373-400
    • Livingston, R.J.1
  • 27
    • 0034037671 scopus 로고    scopus 로고
    • Comparative analysis of indices in the study of virulence diversity between and within populations of Puccinia recondita f. sp. tritici in Israel
    • Manisterski, J., Eyal, Z., Ben-Yehuda, P., and Kosman, E. 2000. Comparative analysis of indices in the study of virulence diversity between and within populations of Puccinia recondita f. sp. tritici in Israel. Phytopathology 90:601-607.
    • (2000) Phytopathology , vol.90 , pp. 601-607
    • Manisterski, J.1    Eyal, Z.2    Ben-Yehuda, P.3    Kosman, E.4
  • 29
    • 0030901723 scopus 로고    scopus 로고
    • The population genetics of fungi: Tools and techniques
    • McDonald, B. A. 1997. The population genetics of fungi: Tools and techniques. Phytopathology 87:448-453.
    • (1997) Phytopathology , vol.87 , pp. 448-453
    • McDonald, B.A.1
  • 30
    • 0030443904 scopus 로고    scopus 로고
    • The role of selection on the genetic structure of pathogen populations: Evidence from field experiments with Mycosphaerella graminicola on wheat
    • McDonald, B. A., Mundt, C. C., and Chen, R.-S. 1996. The role of selection on the genetic structure of pathogen populations: Evidence from field experiments with Mycosphaerella graminicola on wheat. Euphytica 92:73-80.
    • (1996) Euphytica , vol.92 , pp. 73-80
    • McDonald, B.A.1    Mundt, C.C.2    Chen, R.-S.3
  • 31
    • 0033621175 scopus 로고    scopus 로고
    • Analysis of population structure of the chestnut blight fungus based on vegetative incompatibility genotypes
    • Milgroom, M G., and Cortesi, P. 1999. Analysis of population structure of the chestnut blight fungus based on vegetative incompatibility genotypes. Proc. Natl. Acad. Sci. USA 96:10518-10523.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 10518-10523
    • Milgroom, M.G.1    Cortesi, P.2
  • 32
    • 0026747091 scopus 로고
    • DNA fingerprinting and analysis of population structure in the chestnut blight fungus, Cryphonectria parasitica
    • Milgroom, M. G., Lipari, S. E., and Powell, W. A. 1992. DNA fingerprinting and analysis of population structure in the chestnut blight fungus, Cryphonectria parasitica. Genetics 131:297-306.
    • (1992) Genetics , vol.131 , pp. 297-306
    • Milgroom, M.G.1    Lipari, S.E.2    Powell, W.A.3
  • 33
    • 0006919926 scopus 로고
    • Analysis of gene diversity in subdivided populations
    • Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70:3321-3323.
    • (1973) Proc. Natl. Acad. Sci. USA , vol.70 , pp. 3321-3323
    • Nei, M.1
  • 34
    • 0018147653 scopus 로고
    • Estimation of average heterozygosity and genetic distance from a small number of individuals
    • Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590.
    • (1978) Genetics , vol.89 , pp. 583-590
    • Nei, M.1
  • 36
    • 0009752612 scopus 로고
    • The measurement of diversity in different types of biological collections
    • Pielou, E. C. 1966. The measurement of diversity in different types of biological collections. J. Theor. Biol. 13:131-144.
    • (1966) J. Theor. Biol. , vol.13 , pp. 131-144
    • Pielou, E.C.1
  • 40
    • 0031664237 scopus 로고    scopus 로고
    • Genetic structure and temporal dynamics of a Colletotrichum graminicola population in a sorghum disease nursery
    • Rosewich, U. L., Pettway, R. E., McDonald, B. A., Duncan, R. R., and Frederiksen, R. A. 1998. Genetic structure and temporal dynamics of a Colletotrichum graminicola population in a sorghum disease nursery. Phytopathology 88:1087-1093.
    • (1998) Phytopathology , vol.88 , pp. 1087-1093
    • Rosewich, U.L.1    Pettway, R.E.2    McDonald, B.A.3    Duncan, R.R.4    Frederiksen, R.A.5
  • 42
    • 0001359490 scopus 로고
    • Equitability indices: Dependence on the species count
    • Sheldon, A. L. 1969. Equitability indices: Dependence on the species count. Ecology 50:466-467.
    • (1969) Ecology , vol.50 , pp. 466-467
    • Sheldon, A.L.1
  • 43
    • 0003083052 scopus 로고
    • Rarefaction as a distribution-free method of expressing and estimating diversity
    • International Co-operative Publishing House, Fairland, MD
    • Simberloff, D. 1979. Rarefaction as a distribution-free method of expressing and estimating diversity. Pages 159-176 in: Ecological Diversity in Theory and Practice. International Co-operative Publishing House, Fairland, MD.
    • (1979) Ecological Diversity in Theory and Practice , pp. 159-176
    • Simberloff, D.1
  • 44
    • 33344464667 scopus 로고
    • Measurement of diversity
    • Simpson, E. H. 1949. Measurement of diversity. Nature 163:688.
    • (1949) Nature , vol.163 , pp. 688
    • Simpson, E.H.1
  • 45
    • 0023946176 scopus 로고
    • Genotypic diversity: Estimation and prediction in samples
    • Stoddart, J. A., and Taylor, J. F. 1988. Genotypic diversity: Estimation and prediction in samples. Genetics 118:705-711.
    • (1988) Genetics , vol.118 , pp. 705-711
    • Stoddart, J.A.1    Taylor, J.F.2
  • 46
    • 0027975878 scopus 로고
    • Increased genotypic diversity via migration and possible occurrence of sexual reproduction of Phytophthora infestans in Poland
    • Sujkowski, L. S., Goodwin, S. B., Dyer, A. T., and Fry, W. E. 1994. Increased genotypic diversity via migration and possible occurrence of sexual reproduction of Phytophthora infestans in Poland. Phytopathology 84:201-207.
    • (1994) Phytopathology , vol.84 , pp. 201-207
    • Sujkowski, L.S.1    Goodwin, S.B.2    Dyer, A.T.3    Fry, W.E.4
  • 47
    • 0003752712 scopus 로고    scopus 로고
    • Sinauer Associates Inc., Sunderland, MA
    • Weir, B. S. 1996. Genetic Data Analysis. Sinauer Associates Inc., Sunderland, MA.
    • (1996) Genetic Data Analysis
    • Weir, B.S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.