Pseudomonas caeni sp. nov., a denitrifying bacterium isolated from the sludge of an anaerobic ammonium-oxidizing bioreactor

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 10, 2009, Pages 2594-2598

  Xiao, Yi Ping ^a   Hui, Wei ^a   Wang, Qiang ^a   Roh, Seong Woon ^b   Shi, Xue Qing ^a   Shi, Jin Huan ^a   Quan, Zhe Xue ^a  

^a FUDAN UNIVERSITY   (China)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CITRIC ACID; GLUCONIC ACID; GLUCOSE; HYDROXY FATTY ACID; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BIOREACTOR; CARBON SOURCE; DNA BASE COMPOSITION; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS CAENI; PSEUDOMONAS PSEUDOALCALIGENES; SLUDGE;

ANAEROBIOSIS; BIOREACTORS; DNA, BACTERIAL; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; NITRITES; OXIDATION-REDUCTION; PHYLOGENY; PSEUDOMONAS; QUATERNARY AMMONIUM COMPOUNDS; RNA, RIBOSOMAL, 16S; SEWAGE;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS PSEUDOALCALIGENES;

EID: 70350732750     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.005108-0     Document Type: Article

References (20)

1. Chun, J., Lee, J. H., Jung, Y. Y., Kim,M. J., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
2. Dong, X.-Z. & Cai, M.-Y. (2001). Determinative Manual for Routine Bacteriology. Beijing: Scientific Press.
3. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
4. Gonzalez, J. M. & Saiz-Jimenez, C. (2002). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 4, 770-773.
5. Gumaelius, L., Smith, E. H. & Dalhammar, G. (1996). Potential biomarker for denitrification of wastewaters: effects of process variables and cadmium toxicity. Water Res 30, 3025-3031.
6. Gumaelius, L.,Magnusson, G., Pettersson, B. & Dalhammar, G. (2001). Comamonas denitrificans sp. nov., an efficient denitrifying bacterium isolated from activated sludge. Int J Syst Evol Microbiol 51, 999-1006.
7. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
8. King, E. O., Ward, M. K. & Raney, D. E. (1954). Two simple media for the demonstration of pyocyanin and fluorescein. J Lab Clin Med 44, 301-307.
9. Liu, R., Liu, H., Feng, H., Wang, X., Zhang, C.-X., Zhang, K.-Y. & Lai, R. (2008). Pseudomonas duriflava sp. nov., isolated from a desert soil. Int J Syst Evol Microbiol 58, 1404-1408.
10. Migula, W. (1894). Über ein neues System der Bakterien. Arb Bakteriol Inst Technisch Hochsch Karlsruhe 1, 235-238 (in German).
11. Oyaizu, H. & Komagata, K. (1983). Grouping of Pseudomonas species on the basis of cellular fatty acid composition and the quinone system with special reference to the existence of 3-hydroxy fatty acids. J Gen Appl Microbiol 29, 17-40.
12. Palleroni, N. J. (2005). Genus I. Pseudomonas. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, pp. 323-379. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. East Lansing: Springer.
13. Quan, Z. X., Bae, H. S., Baek, J. H., Chen, W. F., Im, W. T. & Lee, S. T. (2005). Rhizobium daejeonense sp. nov. isolated from a cyanide treatment bioreactor. Int J Syst Evol Microbiol 55, 2543-2549.
14. Saitou, N. & Nei, M. (1987). The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
16. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
17. Swofford, D. L. (1993). PAUP. Phylogenetic Analysis Using Parsimony, version 3.1.1. Champaign, IL: Illinois Natural History Survey.
18. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
19. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
20. Xu, H.-X., Kawamura, Y., Li, N., Zhao, L., Li, T.-M., Li, Z.-Y., Shu, S. & Ezaki, T. (2000). A rapid method for determining the G+C content of bacterial chromosomes by monitoring fluorescence intensity during DNA denaturation in a capillary tube. Int J Syst Evol Microbiol 50, 1463-1469.