Molecular phylogeny of Armillaria from the Patagonian Andes

Mycological Progress

Volumn 8, Issue 3, 2009, Pages 181-194

  Pildain, M B ^a   Coetzee, M P A ^b   Rajchenberg, M ^a   Petersen, R H ^c   Wingfield, M J ^b   Wingfield, B D ^b  

^a Centro de Investigacion y Extension Forestal Andino   (Argentina)

^b UNIVERSITY OF PRETORIA   (South Africa)

^c UNIVERSITY OF TENNESSEE   (United States)

Author keywords

Armillaria hinnulea; Armillaria luteobubalina; Armillaria novae zelandiae; Nothofagus; Patagonia

Indexed keywords

ARMILLARIA; ARMILLARIA HINNULEA; ARMILLARIA LUTEOBUBALINA; ARMILLARIA NOVAE-ZELANDIAE; NOTHOFAGUS;

EID: 70350704729     PISSN: 1617416X     EISSN: 18618952     Source Type: Journal    
DOI: 10.1007/s11557-009-0590-8     Document Type: Article

References (44)

1. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-3402. doi:10.1093/nar/25.17.3389.
2. Artigas HFJ (1984) Manual Fitosanitario síntomas y signos de daño. Forestal Mininco SA, Superintendencia Técnica, Concepción.
3. Coetzee MPA, Wingfield BD, Harrington TC, Dalevi D, Coutinho TA, Wingfield MJ (2000) Geographical diversity of Armillaria mellea s.s. based on phylogenetic analysis. Mycologia 92:105-113. doi:10.2307/3761454.
4. Coetzee MPA, Wingfield BD, Bloomer P, Ridley GS, Kile GA, Wingfield MJ (2001) Phylogenetic relationships of Australian and New Zealand Armillaria species. Mycologia 93:887-896. doi:10.2307/3761754.
5. Coetzee MPA, Wingfield BD, Bloomer P, Ridley GS, Wingfield MJ (2003) Molecular identification and phylogeny of Armillaria isolates from South America and Indo-Malaysia. Mycologia 95:285-293. doi:10.2307/3762039.
6. Craw RC, Gehan JR, Heads MJ (1999) Panbiogeography: Tracking the history of life. Oxford University Press, New York.
7. Dimitri MJ, Leonardis RFJ, Biloni JS (1997) El nuevo libro del árbol. Tomo I: Zzzespecies forestales de la Argentina occidental, 2da. Edición, El Ateneo Buenos Aires.
8. Fox RTV (2000) Biology and life cycle. In: Fox RTV (ed) Armillaria root rot: Biology and control of honey fungus. Intercept, Andover, England, pp 3-44.
9. Garrido N (1988) Agaricales s.l. und ihre Mykorrhizen in den Nothofagus-Wäldern Mittelchiles. Bibl Mycol 120:1-528.
10. Guillaumin JJ, Anderson JB, Korhonen K (1991) Life cycle, infertility, and biological species. In: Shaw CG, Kile GA (eds) Armillaria root disease, Agricultural Handbook no. 691. USDA Forest Service, Washington DC, p 10-20.
11. Harrington TC, Wingfield BD (1995) A PCR based identification method for species of Armillaria. Mycologia 87:280-288. doi:10.2307/3760915.
12. Harrington TC, Worrall JJ, Baker FA (1992) Armillaria. In: Singleton LL, Mihail JD, Rush CM (eds) Methods for research on soilborne phytopathogenic fungi. APS Press, St Paul, Minnesota, pp 81-85.
13. Hill RS (2001) Biogeography, evolution and palaeoecology of Nothofagus (Nothofagaceae): The contribution of the fossil record. Aust J Bot 49:321-332. doi:10.1071/BT00026.
14. Hood IA, Redfern DB, Kile GA (1991) Armillaria in planted hosts. In: Shaw CG III, Kile GA (eds) Armillaria root disease, Agricultural Handbook no. 691, USDA Forest Service, Washington DC, p 122-149.
15. Horak E (1979) Flora criptogámica de Tierra del Fuego. Fungi: Basidiomycetes agaricales y Gasteromycetes secotioides. Tomo XI, fascículo. Fundación para la Educación, la Ciencia y la Cultura, Buenos Aires.
16. Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP (2001) Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294:2310-2314. doi:10.1126/science.1065889.
17. Katoh K, Kuma K, Toh H, Miyata T (2005) MAFFT version 5: Improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33:511-518. doi:10.1093/nar/gki198.
18. Kauserud H, Schumacher T (2001) Outcrossing or inbreeding: DNA markers provide evidence for type of reproductive mode in Phellinus nigrolimitatus (Basidiomycota). Mycol Res 53:220-230.
19. Kile GA, Watling R (1981) An expanded concept of Armillaria luteobubalina. Trans Br Mycol Soc 77:75-83.
20. Kile GA, Watling R (1983) Armillaria species from South-Eastern Australia. Trans Br Mycol Soc 81:129-140.
21. Kile GA, Watling R (1988) Identification and occurrence of Australian Armillaria species, including A. pallidula sp. nov. and comparative studies between them and non-Australian tropical and Indian Armillaria. Trans Br Mycol Soc 91:305-315.
22. Kile GA, McDonald GI, Byler JW (1991) Ecology and disease in natural forests. In: Shaw CG, Kile GA (eds) Armillaria root disease. Agricultural Handbook no. 691, USDA Forest Service, Washington DC, p 102-121.
23. Kile GA, Guillaumin JJ, Mohammed C, Watling R (1994) Biogeography and pathology of Armillaria. In: Johanson M, Stenlid J (eds).Proceedings of the Eigth International Conference on Root and Butt Rots. Uppsala, Sweden: Swedish University of Agricultural Sciences, S-750 07, p 411-436.
24. Kim MS, Klopfenstein NB, Hanna JW, McDonald GI (2006) Characterization of North American Armillaria species: Genetic relationships determined by ribosomal DNA sequences and AFLP markers. For Pathol 36:145-164. doi:10.1111/j.1439-0329.2006.00441.x.
25. Korhonen K (1978) Interfertility and clonal size in the Armillaria mellea complex. Karstenia 18:31-42.
26. Lima MLA, Asai T, Capelari M (2008) Armillaria paulensis: A new South American species. Mycol Res. doi:10.1016/j.mycres.2008.03.006.
27. Maphosa L, Wingfield BD, Coetzee MPA, Mwenje E, Wingfield MJ (2006) Phylogenetic relationships among Armillaria species inferred from partial elongation factor 1-alpha DNA sequence data. Australas Plant Pathol 53:513-520. doi:10.1071/AP06056.
28. Moncalvo JM, Lutzoni FM, Rehner SA, Johnson J, Vilgalys R (2000) Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Syst Biol 49:278-305. doi:10.1080/10635159950173852.
29. Mwenje E, Wingfield BD, Coetzee MPA, Nemato H, Wingfield MJ (2006) Armillaria species on tea in Kenya identified using isozyme and DNA sequence comparisons. Plant Pathol 55:343-350. doi:10.1111/j.1365-3059.2006.01347.x.
30. Pérez-Sierra A, Guillaumin JJ, Spooner BM, Bridge PD (2004) Characterization of Armillaria heimii from Africa. Plant Pathol 53:220-230. doi:10.1111/j.0032-0862.2004.00999.x.
31. Posada D, Crandall KA (1998) Modeltest: The model of DNA substitution. Bioinformatics 14:817-818. doi:10.1093/bioinformatics/14.9.817.
32. Ramírez GO (1990) Guía de reconocimiento de plagas y enfermedades en plantaciones forestales. Conaf, Santiago.
33. Ramírez GO, Baldini UA, Friz CR (1992) Daños bióticos y abióticos en eucalipto: Guía de reconocimiento. Monteáguila SA, Conaf, Corma X Región, Chile.
34. Singer R (1953) Four years of mycological work in southern South America. Mycologia 45:865-891.
35. Singer R (1956) The Armillariella mellea Group. Lloydia 19:176-187.
36. Singer R (1969) Mycoflora Australis. Beih Nova Hedwigia 29:40-49.
37. Singer R (1970) Flora Neotropica Monograph n° 3, Omphalinae. Hafner, New York.
38. Smith AG, Briden JC (1977) Mesozoic and Cenozoic Paleocontinental Maps. Cambridge University Press, Cambridge.
39. Swofford DL (2000) PAUP* 4.0: Phylogenetic analysis using parsimony. Sinauer Associates, Sunderland, Mass.
40. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599. doi:10.1093/molbev/msm092.
41. van Steenis CGGJ (1971) Nothofagus, key genus to plant geography, in time and space, living and fossil, ecology and phylogeny. Blumea 19:65-98.
42. Volk TJ, Burdsall HH (1995) A nomenclatural study of Armillaria and Armillariella species (Basidiomycotina, Tricholomataceae). Fungiflora, Førde, Norway.
43. White TJ, Bruns T, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MS, Gelfand DH (eds) PCR protocols: A guide to methods and applications, City Publisher, pp 615-322.
44. Zwickl D (2006) Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. PhD thesis, University of Texas at Austin.