Molecular identification and phylogeny of Armillaria isolates from South America and Indo-Malaysia

Mycologia

Volumn 95, Issue 2, 2003, Pages 285-293

  Coetzee, Martin P A ^a   Wingfield, Brenda D ^a   Bloomer, Paulette ^a   Ridley, Geoff S ^b   Wingfield, Michael J ^a  

^a UNIVERSITY OF PRETORIA   (South Africa)

^b SCION   (New Zealand)

Author keywords

Armillaria limonea; Armillaria luteobubalina; Armillaria novae zelandiae; IGS 1; ITS; Phylogeny; Systematics

Indexed keywords

FUNGAL DISEASE; MOLECULAR ANALYSIS; PHYLOGENY; TAXONOMY;

(SOUTHEAST); ASIA; SOUTH AMERICA;

ARMILLARIA; ARMILLARIA LIMONEA; ARMILLARIA LUTEOBUBALINA; ARMILLARIA NOVAE-ZELANDIAE; MYXOGASTRIA;

EID: 0038670453     PISSN: 00275514     EISSN: None     Source Type: Journal    
DOI: 10.1080/15572536.2004.11833113     Document Type: Article

References (44)

1. Anderson JB, Stasovski E. 1992. Molecular phylogeny of Northern Hemisphere species of Armillaria. Mycologia 84:505-516.
2. Bérubé JA, Dessureault M. 1989. Morphological studies of the Armillaria mellea complex: two new species, A. gemina and A. calvescens. Mycologia 81:216-225.
3. Chillali M, Wipf D, Guillaumin J-J, Mohammed C, Botton B. 1998. Delineation of the European Armillaria species based on the sequences of the internal transcribed spacer (ITS) of ribosomal DNA. New Phytol 138:553-561.
4. Coetzee MPA, Wingfield BD, Bloomer P, Ridley GS, Kile GA, Wingfield MJ. 2001a. Phylogenetic relationships of Australian and New Zealand Armillaria species. Mycologia 93:887-896.
5. _, _, Coutinho TA, Wingfield MJ. 2000a. Identification of the causal agent of Armillaria root rot of Pinus species in South Africa. Mycologia 92:777-785.
6. _, _, Harrington TC, Dalevi D, Coutinho TA, Wingfield MJ. 2000b. Geographical diversity of Armillaria mellea s.s. based on phylogenetic analysis. Mycologia 92:105-113.
7. _, _, _, Steimel J, Coutinho TA, Wingfield MJ. 2001b. The root fungus Armillaria mellea introduced into South Africa by early Dutch settlers. Mol Ecol 10:387-396.
8. Duchesne LC, Anderson JB. 1990. Location and direction of transcription of the 5S rRNA gene in Armillaria. Mycol Res 94:266-269.
9. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
10. Fox RTV. 2000. Biology and life cycle. In: Fox RTV, ed. Armillaria root rot: biology and control of honey fungus. Andover, England: Intercept Limited. p 3-44.
11. _, West J, McQue A, Manley HM. 1994. A plan for the managment of Armillaria in horticulture. In: Johansson M, Stenlid J, eds. Proceedings of the Eighth International Conference on Root and Butt Rots. Uppsala, Sweden: Swedish University of Agricultural Sciences, S-750 07. p 712-722.
12. Gregory SC, Rishbeth J, Shaw CG. 1991. Pathogenicity and virulence. In: Shaw CG, Kile GA, eds. Armillaria root disease. USDA Agricultural Handbook No. 691. Washington DC: USDA. p 76-87.
13. Guillaumin J-J, Anderson JB, Korhonen K. 1991. Life cycle, interfertility, and biological species. In: Shaw CG, Kile GA, eds. Armillaria root disease. USDA Agricultural Handbook No. 691. Washington DC: USDA. p 10-20.
14. Harrington TC, Wingfield BD. 1995. A PCR-based identification method for species of Armillaria. Mycologia 87:280-288.
15. Hillis DM, Huelsenbeck JP. 1992. Signal, noise, and reliability in molecular phylogenetic analyses. J Hered 83:189-195.
16. Horak E. 1983. Mycogeography in the south pacific region: Agaricales, Boletales. Aust J Bot Suppl Ser 10:1-41.
17. Hood IA, Redfern DB, Kile GA. 1991. Armillaria in planted hosts. In: Shaw CG, Kile GA, eds. Armillaria root disease. USDA Agricultural Handbook No. 691. Washington DC: USDA. p 122-149.
18. Hsiau PT-W. 1996. The taxonomy and phylogeny of the mycangial fungi from Dendroctonus brevicomis and D. frontalis (Coleoptera: Scolytidae) [PhD thesis]. Ames, Iowa: Iowa State Univ. 92 p.
19. Ivory MH. 1987. Diseases and disorders of pines in the tropics: a field and laboratory manual. Overseas Res Pub No 31. Oxford: Oxford University, Oxford Forestry Institute, Overseas Development Administration. 92 p.
20. Jahnke K-D, Bahnweg G, Worral JJ. 1987. Species delimitation in the Armillaria mellea complex by analysis of nuclear and mitochondrial DNAs. Trans Br Mycol Soc 88:572-575.
21. Kile GA, Guillaumin J-J, Mohammed C, Wading R. 1994. Biogeography and pathology of Armillaria. In: Johansson M, Stenlid J, eds. Proceedings of the Eighth International Conference on Root and Butt Rots. Uppsala, Sweden: Swedish University of Agricultural Sciences, S-750 07. p 411-436.
22. _, McDonald GI, Byler JW. 1991. Ecology and disease in natural forests. In: Shaw CG, Kile GA, eds. Armillaria root disease. USDA Agricultural Handbook No. 691. Washington DC: USDA. p 102-121.
23. _, Watling R. 1981. An expanded concept of Armillaria luteobubalina. Trans Br Mycol Soc 77:75-83.
24. _, _. 1983. Armillaria species from south-eastern Australia. Trans Br Mycol Soc 81:129-140.
25. _, _. 1988. Identification and occurrence of Australian Armillaria species, including A. pallidula sp. nov. and comparative studies between them and non-Australian tropical and Indian Armillaria. Trans Br Mycol Soc 91:305-315.
26. Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120.
27. Korhonen K. 1978. Interfertility and clonal size in the Armillariella mellea complex. Karstenia 18:31-42.
28. Miller OK, Johnson JL, Burdsall HH, Flynn T. 1994. Species delimitation in North American species of Armillaria as measured by DNA reassociation. Mycol Res 98:1005-1011.
29. O'Donnell K, Cigelnik E, Nirenberg HI. 1998. Molecular systematics and phylogeography of the Gibberella fujikuroi species complex. Mycologia 90:465-493.
30. Pérez-Sierra A, Whitehead D, Whitehead M. 2000. Molecular methods used for the detection and identification of Armillaria. In: Fox RTV, ed. Armillaria root rot: biology and control of honey fungus. Andover, England: Intercept Limited. p 95-110.
31. Poole AL. 1987. Southern beeches. Wellington, New Zealand: DSIR, Science Information Publishing Centre. 148 p.
32. Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
33. Shearer BL. 1994. The major plant pathogens occurring in native ecosystems of south-western Australia. J R Soc West Aust 77:113-122.
34. Singer R. 1953. Four years of mycological work in southern South America. Mycologia 45:865-891.
35. _. 1969. Mycoflora Australis. Beih Nova Hedwigia 29:40-49.
36. Smith ML, Anderson JB. 1989. Restriction fragment length polymorphisms in mitochondrial DNAs of Armillaria: identification of North American biological species. Mycol Res 93:247-256.
37. Stevenson G. 1964. The Agaricales of New Zealand V. Tricholomataceae. Kew Bull 19:1-59.
38. Swofford DL. 1998. PAUP*: phylogenetic analysis using parsimony (*and other methods). Vers: 4. Sunderland, Massachusetts: Sinauer Associates.
39. Terashima K, Cha JY, Yajima T, Igarashi T, Miura K. 1998. Phylogenetic analysis of Japanese Armillaria based on the intergenic spacer (IGS) sequences of their ribosomal DNA. Eur J For Pathol 28:11-19.
40. Termorshuizen AJ. 2000. Ecology and epidemiology of Armillaria. In: Fox RTV, ed. Armillaria root rot: biology and control of honey fungus. Andover, England: Intercept Limited. p 45-63.
41. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882.
42. Ullrich RC, Anderson JB. 1978. Sex and diploidy in Armillaria mellea. Exp Mycol 2:119-129.
43. Volk TJ, Burdsall HH. 1995. A nomenclatural study of Armillaria and Armillariella species (Basidiomycotina, Tricholomataceae). Oslo: Eko-trykk A/S. 121 p.
44. White TJ, Bruns T, Lee S, Tailor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego: Academic Press. p 315-322.