Correspondence of ISSR and RAPD markers for comparative analysis of genetic diversity among different apricot genotypes from cold arid deserts of trans-Himalayas

Physiology and Molecular Biology of Plants

Volumn 15, Issue 3, 2009, Pages 225-236

  Kumar, Meetul ^a   Mishra, Gyan P ^a   Singh, Raghwendra ^a   Kumar, Jitendra ^a   Naik, Pradeep K ^b   Singh, Shashi Bala ^a  

^a Leh Ladakh C o 56APO   (India)

^b JAYPEE UNIVERSITY OF INFORMATION TECHNOLOGY   (India)

Author keywords

AMOVA; Apricot; Genetic Diversity; ISSR; Prunus armeniaca; RAPD

Indexed keywords

PRUNUS ARMENIACA;

EID: 70350702881     PISSN: 09715894     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12298-009-0026-6     Document Type: Article

References (29)

1. Ajibade SR, Weeden NF and Chite SM (2000). Inter simple sequence repeat analysis of genetic relationships in the genus Vigna. Euphytica 111: 47-55.
2. Alam A, Naik PK and Mishra Gyan P (2009). Congruence of RAPD and ISSR markers for evaluation of genomic relationship among 28 populations of Podophyllum hexandrum from Himachal Pradesh. Turk. J. Bot. 33: 1-12.
3. Blair MW, Panaud O and Mccouch SR (1999). Inter-simple sequence repeat (ISSR) amplification for analysis of microsatellite motif frequency and fingerprinting in rice (Oryza sativa L.). Theo. Appl. Genet. 98: 780-792.
4. Dwivedi SK and Atrey DP (2002). Possibilities of apricot production in high altitude regions of Uttaranchal. In: National Seminar on Development of Horticulture in Uttaranchal, Dehradun, India, pp. 17-20.
5. Dwivedi SK, Kareem A and Ahmed Z (2007). Apricot in Ladakh. Field Research Laboratory, DRDO, C/o 56 APO, Leh, Ladakh.
6. Dwivedi SL, Gurtu S, Chandra S, Yuejin W and Nigam SN (2001). Assessment of genetic diversity among selected groundnut germplasm through RAPD analysis. Plant Breed. 120: 345-349.
7. Excoffier L, Smouse PE and Quattro JM (1992). Analyses of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
8. Fernandez ME, Figueiras AM and Benito C (2002). The use of ISSR and RAPD marker for detecting DNA polymorphism, genotype identification and genetic diversity among barley cultivars with known origin, Theor. Appl. Genet. 104: 845-851.
9. Gaffor A, Sharif A, Ahmad Z, Zahid MA and Rabbani MA (2001). Genetic diversity in blackgram (Vigna mungo L. Hepper). Field Crop Res. 69: 183-190.
10. Gupta S, Srivastava M, Mishra Gyan P, Naik PK, Chauhan RS, Tiwari SK, Kumar M and Singh R (2008). Analogy of ISSR and RAPD markers for comparative analysis of genetic diversity among different Jatropha curcas genotypes. Afr. J. Biotechnol. 23: 4230-4243.
11. Holsinger KE, Lewis PO, Dipak KD (2002). A Bayesian approach to inferring population structure from dominant markers. Mol. Ecol. 11: 1157-1164.
12. Karp A, Edwards K, Bruford M, Vosman B, Morgante M, Seberg O, Kremer A, Boursot P, Arctander P, Tautz D and Hewitt G (1997). Newer molecular technologies for biodiversity evaluation: Opportunities and challenges. Nat. Biotechnol. 15: 625-628.
13. Loarce Y, Gallego R and Ferrer E (1996). A comparative analysis of genetic relationships between rye cultivars using RFLP and RAPD markers. Euphytica 88: 107-115.
14. Martín JP and Sánchez-Yélamo MD (2000). Genetic relationships among species of the genus Diplotaxis (Brassicaceae) using inter-simple sequence repeat markers. Theor. Appl. Genet. 101: 1234-1241.
15. Messina R, Lain O, Marrazzo MT, Cipriani G and Testolin R (2004). New set of microsatellite loci isolated in apricot, Mol. Ecol. Notes 4: 432-434.
16. Moreno S, Martin JP and Ortiz JM (1998). Inter-simple sequence repeat PCR for characterization of closely related grapevine germplasm. Euphytica 101: 117-125.
17. Nagaoka T and Ogihara Y (1997). Applicability of intersimple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theor. Appl. Genet. 94: 597-602.
18. Nei M (1978). Estimation of average heterozygosity and genetic distance from a small number of individual. Genetics 89: 583-590.
19. Peakall R and Smouse PE (2001). GenAlEx V5: Genetic Analysis in Excel. Population genetic software for teaching and research. Australian National University, Canberra, Australia, (http://www.anu.edu.au/BoZo/GenAlEx).
20. Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S and Rafalski A (1996). The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 2: 225-238.
21. Prevost A and Wilkinson MJ (1999). A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor. Appl. Genet. 98: 107-112.
22. Rohlf FJ (1992). NTSYS-PC: Numerical taxonomy and multivariate analysis system version 2.0. State University of New York (Stony Brook, New York).
23. Saghai-Maroof MA, Soliman KM, Jorgensen RA and Allard RW (1984). Ribosomal spacer length in barley: Mendelian inheritance, Chromosomal location and population dynamics. Proc. Natl. Acad. Sci. 81: 8104-8118.
24. UPOV (1976). Guidelines for the conduct of test for distintness, homogeinity and stability of the cherry. UPOV, TG/35/3.
25. Vavilov NI (1951). Phytogeographic basis of plant breeding. The origin, variation, immunity and breeding of cultivated plants. K.S. Chester [Translated]. Chronol. Bot. 13: 13-54.
26. Weir BS (1990). Genetic data analysis. Sinauer Associates, Sunderland, MA.
27. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA and Tingey SV (1990). DNA Polymorphisms amplified by arbitrary primers and useful as genetic markers. Nucl. Acids Res. 18: 6531-6535.
28. Zhao WG, Zhang JQ, Wangi YH, Chen TT, Yin Y, Huang YP, Pan Y and Yang Y (2006). Analysis of genetic diversity in wild populations of mulberry from western part of Northeast China determined by ISSR markers. J. Genet. Mol. Biol. 7: 196-203.
29. Zietkiewicz E, Rafalski A and Labuda D (1994). Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-183.