Single Nucleotide Polymorphisms and Haplotypic Diversity in the Bovine PRKAB1 Gene

Molecular Biotechnology

Volumn 43, Issue 3, 2009, Pages 193-199

  Zhang, Qin ^a,c   Chen, Hong ^a,b   Zhao, Sheng ^a,c   Zhang, Li ^a   Zhang, Liangzhi ^a   Li, Fei ^a   Wang, Xueming ^c  

^a NORTHWEST A F UNIVERSITY   (China)

^b JIANGSU NORMAL UNIVERSITY   (China)

^c JINGCHU UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

AMP activated protein kinase beta 1 subunit gene; Cattle; Haplotypic diversity; Single nucleotide polymorphism

Indexed keywords

AMP-ACTIVATED PROTEIN KINASE; AMP-ACTIVATED PROTEIN KINASE BETA 1 SUBUNIT GENE; CATTLE; CODING REGION; EXON BOUNDARIES; FLANKING REGIONS; GENETIC POLYMORPHISMS; GLYCOGEN METABOLISM; HAPLOTYPE FREQUENCIES; HAPLOTYPES; HAPLOTYPIC DIVERSITY; LINKAGE DISEQUILIBRIUM; PCR-SSCP; REGULATORY SUBUNITS; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; SINGLE NUCLEOTIDE POLYMORPHISMS;

BIOCHEMISTRY; ENERGY BALANCE; ENERGY CONSERVATION; LADDER NETWORKS; METABOLISM; NUCLEOTIDES; POLYMORPHISM;

ENZYME ACTIVITY;

ADENOSINE PHOSPHATE; PROTEIN PRKAB1; UNCLASSIFIED DRUG;

5' UNTRANSLATED REGION; ARTICLE; CATTLE; CHINA; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE MUTATION; GENETIC ANALYSIS; GENETIC VARIABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SINGLE NUCLEOTIDE POLYMORPHISM; SINGLE STRAND CONFORMATION POLYMORPHISM;

AMP-ACTIVATED PROTEIN KINASES; ANIMALS; CATTLE; CHINA; HAPLOTYPES; LINKAGE DISEQUILIBRIUM; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; POLYMORPHISM, SINGLE-STRANDED CONFORMATIONAL;

BOS; BOVINAE;

EID: 70350566014     PISSN: 10736085     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12033-009-9194-4     Document Type: Article

References (22)

1. JM Corton JG Gillespie DG Hardie 1994 Role of the AMP-activated protein kinase in the cellular stress response Current Biology 4 4 315 324 10.1016/S0960-9822(00)00070-1 1:CAS:528:DyaK2cXktVGqsbg%3D (Pubitemid 2069614)
2. DG Hardie D Carling M Carlson 1998 The AMP-activated/SNF1 protein kinase subfamily: metabolic sensors of the eukaryotic cell? Annual Reviews of Biochemistry 67 821 855 10.1146/annurev.biochem.67.1.821 1:CAS:528: DyaK1cXlsFOmtr4%3D (Pubitemid 28411146)
3. KI Mitchelhill D Stapleton G Gao C House B Michell F Katsis LA Witters BE Kemp 1994 Mammalian AMP-activated protein kinase shares structural and functional homology with the catalytic domain of yeast Snf1 protein kinase The Journal of Biological Chemistry 269 4 2361 2364 1:CAS:528:DyaK2cXhvVKjsL0%3D
4. D Stapleton KI Mitchelhill G Gao J Widmer BJ Michell T Teh CM House CS Fernandez T Cox LA Witters BE Kemp 1996 Mammalian AMP-activated protein kinase subfamily The Journal of Biological Chemistry 271 2 611 614 10.1074/jbc.271.2. 611 1:CAS:528:DyaK28XksFKrtA%3D%3D (Pubitemid 26034902)
5. TJ Iseli JS Oakhill MF Bailey S Wee M Walter BJ van Denderen LA Castelli F Katsis LA Witters D Stapleton SL Macaulay BJ Michell BE Kemp 2008 AMP-activated protein kinase subunit interactions: beta1:gamma1 association requires beta1 Thr-263 and Tyr-267 The Journal of Biological Chemistry 283 8 4799 4807 10.1074/jbc.M708298200 1:CAS:528:DC%2BD1cXhvFeksrk%3D
6. MM Mahtani E Widen M Lehto J Thomas M McCarthy J Brayer B Bryant G Chan M Daly C Forsblom T Kanninen A Kirby L Kruglyak K Munnelly M Parkkonen MP Reeve-Daly A Weaver T Brettin G Duyk ES Lander LC Groop 1996 Mapping of a gene for type 2 diabetes associated with an insulin secretion defect by a genome scan in Finnish families Nature Genetics 14 1 90 94 10.1038/ng0996-90 1:CAS:528:DyaK28Xls1Wjtr4%3D (Pubitemid 26301553)
7. JT Shaw PK Lovelock JB Kesting J Cardinal D Duffy B Wainwright DP Cameron 1998 Novel susceptibility gene for late-onset NIDDM is localized to human chromosome 12q Diabetes 47 11 1793 1796 10.2337/diabetes.47.11.1793 1:CAS:528:DyaK1cXntVSjs7g%3D (Pubitemid 28476255)
8. DW Bowden M Sale TD Howard A Qadri BJ Spray CB Rothschild G Akots SS Rich BI Freedman 1997 Linkage of genetic markers on human chromosomes 20 and 12 to NIDDM in Caucasian sib pairs with a history of diabetic nephropathy Diabetes 46 5 882 886 10.2337/diabetes.46.5.882 1:CAS:528:DyaK2sXjtVGntbg%3D
9. SM Warden C Richardson J O'Donnell Jr D Stapleton BE Kemp LA Witters 2001 Post-translational modifications of the beta-1 subunit of AMP-activated protein kinase affect enzyme activity and cellular localization The Biochemical Journal 354 Pt 2 275 283 10.1042/0264-6021:3540275 1:CAS:528:DC%2BD3MXitFWrs7Y%3D (Pubitemid 32209863)
10. ER Hudson DA Pan J James JM Lucocq SA Hawley KA Green O Baba T Terashima DG Hardie 2003 A novel domain in AMP-activated protein kinase causes glycogen storage bodies similar to those seen in hereditary cardiac arrhythmias Current Biology 13 10 861 866 10.1016/S0960-9822(03)00249-5 1:CAS:528: DC%2BD3sXjvFamtr0%3D (Pubitemid 36573255)
11. G Polekhina A Gupta BJ Michell B van Denderen S Murthy SC Feil IG Jennings DJ Campbell LA Witters MW Parker BE Kemp D Stapleton 2003 AMPK beta subunit targets metabolic stress sensing to glycogen Current Biology 13 10 867 871 10.1016/S0960-9822(03)00292-6 1:CAS:528:DC%2BD3sXjvFamtro%3D (Pubitemid 36573256)
12. H Sakoda M Fujishiro J Fujio N Shojima T Ogihara A Kushiyama Y Fukushima M Anai H Ono M Kikuchi N Horike AY Viana Y Uchijima H Kurihara T Asano 2005 Glycogen debranching enzyme association with beta-subunit regulates AMP-activated protein kinase activity American Journal of Physiology. Endocrinology Metabolism 289 3 E474 E481 10.1152/ajpendo.00003.2005 1:CAS:528:DC%2BD2MXhtVWksbrI (Pubitemid 41192703)
13. SD McKay SN White SR Kata R Loan JE Womack 2003 The bovine 5' AMPK gene family: mapping and single nucleotide polymorphism detection Mammalian Genome 14 12 853 858 10.1007/s00335-003-2276-x 1:CAS:528:DC%2BD2cXkslOjuw%3D%3D (Pubitemid 37500823)
14. Sambrook, J., & Russell, D. W. (2001). Molecular cloning: A laboratory manual (3rd ed., Vol. 3). New York: Cold Spring Harbor Laboratory Press.
15. C Zhang Y Wang H Chen X Lan C Lei 2007 Enhance the efficiency of single-strand conformation polymorphism analysis by short polyacrylamide gel and modified silver staining Analytical Biochemistry 365 2 286 287 10.1016/j.ab.2007.03.023 1:CAS:528:DC%2BD2sXlt1Cjsro%3D (Pubitemid 46711082)
16. JC Barrett B Fry J Maller MJ Daly 2005 Haploview: Analysis and visualization of LD and haplotype maps Bioinformatics 21 2 263 265 10.1093/bioinformatics/bth457 1:CAS:528:DC%2BD2MXkt1WitQ%3D%3D (Pubitemid 40202029)
17. JC Stephens JA Schneider DA Tanguay J Choi T Acharya SE Stanley R Jiang CJ Messer A Chew JH Han J Duan JL Carr MS Lee B Koshy AM Kumar G Zhang WR Newell A Windemuth C Xu TS Kalbfleisch SL Shaner K Arnold V Schulz CM Drysdale K Nandabalan RS Judson G Ruano GF Vovis 2001 Haplotype variation and linkage disequilibrium in 313 human genes Science 293 5529 489 493 10.1126/science. 1059431 1:CAS:528:DC%2BD3MXlsFGjsbY%3D (Pubitemid 32679076)
18. K Nakamoto S Wang RD Jenison GL Guo CD Klaassen YJ Wan XB Zhong 2006 Linkage disequilibrium blocks, haplotype structure, and htSNPs of human CYP7A1 gene BMC Genetics 7 29 10.1186/1471-2156-7-29 (Pubitemid 44018133)
19. MA Saunders MF Hammer MW Nachman 2002 Nucleotide variability at G6pd and the signature of malarial selection in humans Genetics 162 4 1849 1861 1:CAS:528:DC%2BD3sXht1ajs7g%3D
20. MA Saunders M Slatkin C Garner MF Hammer MW Nachman 2005 The extent of linkage disequilibrium caused by selection on G6PD in humans Genetics 171 3 1219 1229 10.1534/genetics.105.048140 1:CAS:528:DC%2BD28Xjs1Krtw%3D%3D (Pubitemid 43234853)
21. C Toomajian M Kreitman 2002 Sequence variation and haplotype structure at the human HFE locus Genetics 161 4 1609 1623 1:CAS:528:DC%2BD38XnsVClu7s%3D
22. RM Clark E Linton J Messing JF Doebley 2004 Pattern of diversity in the genomic region near the maize domestication gene tb1 Proceedings of the National Academy of Sciences United States of the America 101 3 700 707 10.1073/pnas.2237049100 1:CAS:528:DC%2BD2cXhsVWhtbo%3D (Pubitemid 38121020)