Phocaeicola abscessus gen. nov., sp. nov., an anaerobic bacterium isolated from a human brain abscess sample

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 9, 2009, Pages 2232-2237

  Al Masalma, Mouhamad ^a   Raoult, Didier ^a   Roux, Véronique ^a  

^a TIMONE HOSPITAL   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RNA 16S; BACTERIAL DNA; FATTY ACID; RIBOSOME DNA;

ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTEROIDES; BRAIN TISSUE; CONTROLLED STUDY; DYSGONOMONAS; GENE SEQUENCE; GENETIC DISTANCE; GENETIC SIMILARITY; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PARABACTEROIDES; PHOCAEICOLA ABSCESSUS; PORPHYROMONAS; PREVOTELLA; PRIORITY JOURNAL; STRAIN DIFFERENCE; TANNERELLA; ANAEROBIC GROWTH; BACTERIUM IDENTIFICATION; BACTEROIDETES; BRAIN ABSCESS; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; FLAGELLUM; GENETICS; HUMAN; ISOLATION AND PURIFICATION; LOCOMOTION; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY; TRANSMISSION ELECTRON MICROSCOPY; ULTRASTRUCTURE;

BACTERIA (MICROORGANISMS); BACTEROIDES; BACTEROIDETES; COCCOIDEA; DYSGONOMONAS; NEGIBACTERIA; PORPHYROMONAS; PREVOTELLA; TANNERELLA;

ANAEROBIOSIS; BACTERIAL TYPING TECHNIQUES; BACTEROIDETES; BRAIN ABSCESS; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLAGELLA; HUMANS; LOCOMOTION; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 70350495618     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.007823-0     Document Type: Article

References (19)

1. Aas, J. A., Paster, B. J., Stokes, L. N., Olsen, I. & Dewhirst, F. E. (2005). Defining the normal bacterial flora of the oral cavity. J Clin Microbiol 43, 5721-5732.
2. Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E. & Relman, D. A. (2005). Diversity of the human intestinal microbial flora. Science 308 1635-1638.
3. Fredricks, D. N., Fiedler, T. L. & Marrazzo, J. M. (2005). Molecular identification of bacteria associated with bacterial vaginosis. N Engl J Med 353, 1899-1911.
4. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
5. Hayashi, H., Sakamoto, M. & Benno, Y. (2002). Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol Immunol 46, 535-548.
6. Hofstad, T., Olsen, I., Eribe, E. R., Falsen, E., Collins, M. D. & Lawson, P. A. (2000). Dysgonomonas gen. nov. to accommodate Dysgonomonas gadei sp. nov., an organism isolated from a human gall bladder, and Dysgonomonas capnocytophagoides (formerly CDC group DF-3). Int J Syst Evol Microbiol 50, 2189-2195.
7. Hooper, L. V. & Gordon, J. I. (2001). Commensal host-bacterial relationships in the gut. Science 292, 1115-1118.
8. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
9. Saito, D., Leonardo, R. T., Rodrigues, J. L., Tsai, S. M., Höfling, J. F. & Goncalves, R. B. (2006). Identification of bacteria in endodontic infections by sequence analysis of 16S rDNA clone libraries. J Med Microbiol 55, 101-107.
10. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
11. Sakamoto, M. & Benno, Y. (2006). Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov. Int J Syst Evol Microbiol 56, 1599-1605.
12. Sakamoto, M., Suzuki, M., Umeda, M., Ishikawa, I. & Benno, Y. (2002). Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig., gen. nov., comb. nov. Int J Syst Evol Microbiol 52, 841-849.
13. Shah, H. N. & Collins, M. D. (1988). Proposal for reclassification of Bacteroides asaccharolyticus, Bacteroides gingivalis, and Bacteroides endodontalis in a new genus, Porphyromonas. Int J Syst Bacteriol 38, 128-131.
14. Shah, H. N. & Collins, M. D. (1989). Proposal to restrict the genus Bacteroides (Castellani and Chalmers) to Bacteroides fragilis and closely related species. Int J Syst Bacteriol 39, 85-87.
15. Shah, H. N. & Collins, D. M. (1990). Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides. Int J Syst Bacteriol 40, 205-208.
16. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
17. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
18. Willems, A. & Collins, M. D. (1995a). 16S rRNA gene similarities indicate that Hallella seregens (Moore and Moore) and Mitsuokella dentalis (Haapasalo et al.) are genealogically highly related and are members of the genus Prevotella: emended description of the genus Prevotella (Shah and Collins) and description of Prevotella dentalis comb. nov. Int J Syst Bacteriol 45, 832-836.
19. Willems, A. & Collins, M. D. (1995b). Reclassification of Oribaculum catoniae (Moore and Moore 1994) as Porphyromonas catoniae comb. nov. and emendation of the genus Porphyromonas. Int J Syst Bacteriol 45, 578-581.