Reconsideration of phylogenetic relationships of the subclass peritrichia (ciliophora, oligohymenophorea) based on small subunit ribosomal rna gene sequences, with the establishment of a new subclass Mobilia Kahl, 1933

Journal of Eukaryotic Microbiology

Volumn 56, Issue 6, 2009, Pages 552-558

  Zhan, Zifeng ^a   Xu, Kuidong ^a   Warren, Alan ^b   Gong, Yingchun ^c  

^a INSTITUTE OF OCEANOLOGY   (China)

^b DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

^c INSTITUTE OF HYDROBIOLOGY   (China)

Author keywords

Mobilida; Molecular systematics; Peritrichida; Sessilida; Trichodina; Urceolaria urechi

Indexed keywords

PROTOZOAL DNA; RIBOSOME RNA; SEA WATER;

CILIATE; CLADISTICS; CONVERGENT EVOLUTION; FEEDING BEHAVIOR; GENETIC ANALYSIS; LIFESTYLE; MOLECULAR ANALYSIS;

ANIMAL; ARTICLE; CLASSIFICATION; DNA SEQUENCE; EVOLUTION; GENETICS; MOLECULAR GENETICS; MOLLUSC; MOUTH; NUCLEOTIDE SEQUENCE; OLIGOHYMENOPHOREA; PARASITOLOGY; PHYLOGENY; SEQUENCE ALIGNMENT; SMALL RIBOSOMAL SUBUNIT; SPECIES DIFFERENCE; ULTRASTRUCTURE;

ANIMALS; BASE SEQUENCE; DNA, PROTOZOAN; EVOLUTION; MOLECULAR SEQUENCE DATA; MOLLUSCA; MOUTH; OLIGOHYMENOPHOREA; PHYLOGENY; RIBOSOME SUBUNITS, SMALL; RNA, RIBOSOMAL; SEAWATER; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

CILIOPHORA; HYMENOSTOMATIDA; MOBILIDA; OLIGOHYMENOPHOREA; PERITRICHIA (CILIATES); SESSILIDA; TRICHODINA; TRICHODINA MERETRICIS; TRICHODINA SINONOVACULAE; URCEOLARIA (CILIATE);

EID: 70350489113     PISSN: 10665234     EISSN: 15507408     Source Type: Journal    
DOI: 10.1111/j.1550-7408.2009.00435.x     Document Type: Article

References (47)

1. Aescht, E. 2001. Catalogue of the generic names of ciliates (Protozoa, Ciliophora). Denisia, 1 : 1 350.
2. Ahmed, A. T. A. 1977. Morphology and life history of Trichodina reticulata from goldfish and other carps. Fish Pathol., 12 : 21 31.
3. Corliss, J. O. 1953. Silver impregnation of ciliated protozoa by the Chatton-Lwoff technic. Stain Technol., 28 : 97 100.
4. Corliss, J. O. 1979. The Ciliated Protozoa: Characterization, Classification, and Guide to the Literature. 2nd ed. Pergamon Press, Oxford.
5. Diller, W. F. 1928. Binary fission and endomyxis in the Trichodina from tadpole. J. Morphol., 46 : 521 561.
6. Esteban, G. Fernández-Galiano, D. 1989. Morphology and morphogenesis in Carchesium polypinum (Ciliophora: Peritrichida). Trans. Am. Microsc. Soc., 108 : 345 353.
7. Felsenstein, J. 2007. PHYLIP (Phylogeny Inference Package) Version 3.67. Software Distributed by the Author. Department of Genome Sciences and Department of Biology, University of Washington, Seattle, WA.
8. Feng, S. 1985. A biological investigation of asexual reproduction of Trichodina nobilis Chen. Acta Hydrobiol. Sin., 9 : 331 342. (in Chinese with English summary)
9. Foissner, W. 1996. Ontogenesis in ciliated protozoa, with emphasis on stomatogenesis. In : Hausmann, K. Bradbury, P. C. (ed.), Ciliates: Cells as Organisms. Fischer, Stuttgart. p. 95 177.
10. Gong, Y.-C. 2007. Studies on the phylogeny of trichodinids. Dissertation. Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China. 119 p. Available at http://dpaper.csdl.ac.cn/xwlw/outline-xwlw.jsp, accession number LW033626 (accessed on June 2007).
11. Gong, Y.-C., Yu, Y.-H., Villalobo, E., Zhu, F.-Y. Miao, W. 2006. Reevaluation of the phylogenetic relationship between mobilid and sessilid peritrichs (Ciliophora, Oligohymenophorea) based on small subunit rRNA genes sequences. J. Eukaryot. Microbiol., 53 : 397 403.
12. Guindon, S. Gascuel, O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol., 52 : 696 704.
13. Haider, G. 1964. Monographie der Familie Urceolariidae (Ciliata, Peritricha, Mobilina) mit besonderer Berucksichtigung der im suddeutschen Raum vorkommenden Arten. Parasitol. Schrift., 17 : 1 251.
14. Hausmann, K. Hausmann, E. 1981a. Structural studies on Trichodina pediculus (Ciliophora, Peritricha). I. The locomotor fringe and the oral apparatus. J. Ultrastruct. Res., 74 : 131 143.
15. Hausmann, K. Hausmann, E. 1981b. Structural studies on Trichodina pediculus (Ciliophora, Peritricha). II. The adhesive disc. J. Ultrastruct. Res., 74 : 144 155. (Pubitemid 11016547)
16. Huelsenbeck, J. P. Ronquist, F. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics, 17 : 754 755.
17. Kahl, A. 1933. Ciliata libera et ectocommensalia. In : Grimpe, G. Wagler, E. (ed.), Die Tierwelt der Nord-und Ostsee. Lief. 2 (3). Leipzig. p. 29 146.
18. Kazubski, S. L. 1967. Study on the growth of skeletal elements in Trichodina pediculus Ehrbg. Acta Protozool., 5 : 37 48.
19. Kishino, H. Hasegawa, M. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol., 19 : 170 179.
20. Li, L., Song, W., Warren, A., Shin, M. K., Chen, Z., Ji, D. Sun, P. 2008. Reconsideration of the phylogenetic positions of five peritrich genera, Vorticella, Pseudovorticella, Zoothamnopsis, Zoothamnium, and Epicarchesium (Ciliophora, Peritrichia, Sessilida), based on small subunit rRNA gene sequences. J. Eukaryot. Microbiol., 55 : 448 456.
21. Lom, J. 1964. The morphology and morphogenesis of the buccal ciliary organelles in some peritrichous ciliates. Arch. Protistenkd., 107 : 131 162.
22. Lom, J. 1973. The adhesive disc of Trichodinella epizootica - ultrastructure and injury to the host tissue. Folia Parasitol., 20 : 193 202.
23. Lom, J. 1995. Trichodinidae and other ciliates (Phylum Ciliophora). In : Woo, P. T. K. (ed.), Fish Diseases and Disorders. Cambridge University Press, Cambridge, UK. p. 229 262.
24. Lom, J. Dyková, I. 1992. Protozoan Parasites of Fishes. Developments in Aquaculture and Fisheries Science. 26. Elsevier, Amsterdam.
25. Lynn, D. H. 1979. Changes in the classification of several major taxa of Ciliophora on the basis of a numerical phenetic analysis. J. Protozool., 26 : 359 366.
26. Lynn, D. H. 1981. The organization and evolution of microtubular organelles in ciliated protozoa. Biol. Rev., 56 : 243 292.
27. Lynn, D. H. 2003. Morphology or molecules: how do we identify the major lineages of ciliates (Phylum Ciliophora). Eur. J. Protistol., 39 : 356 364.
28. Lynn, D. H. 2008. The Ciliated Protozoa: Characterization, Classification, and Guide to the Literature. 3rd ed. Springer, Berlin. p. 428 435.
29. Medlin, L., Elwood, H. J., Stickel, S. Sogin, M. L. 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene, 71 : 491 499.
30. Miao, W., Yu, Y. Shen, Y. 2001. Phylogenetic relationships of the Subclass Peritrichia (Oligohymenophorea, Ciliophora) with emphasis on the genus Epistylis, inferred from small subunit rRNA gene sequences. J. Eukaryot. Microbiol., 48 : 583 587.
31. Miao, W., Feng, W., Yu, Y., Zhang, X. Shen, Y. 2004. Phylogenetic relationships of the subclass Peritricha (Oligohymenophorea, Ciliophora) inferred from small subunit rRNA gene sequences. J. Eukaryot. Microbiol., 51 : 180 186.
32. Padnos, M. Nigrelli, R. F. 1942. Trichodina spheroidesi and Trichodina halli spp. nov. parasitic on the gills and skin of marine fishes, with special reference to the life-history of T. spheroidesi. Zoolog. New York, 27 : 65 72.
33. Peshkowsky, L. 1923. Biological and structural features of Trichodina mitra. Russ. Arkh. Protistol., 2 : 249 279.
34. Poljansky, G. I. 1951. On some parasitic infusoria of marine mollusks and holothurians. Mag. Parasit. Mosc., 13 : 355 370. (in Russian).
35. Posada, D. Crandall, K. A. 1998. Model test: testing the model of DNA substitution. Bioinformatics, 14 : 817 818.
36. Raabe, Z. 1952. Ambiphrya miri g. n., sp. n. - eine Übergangsform zwischen Peritricha-Mobilia und Peritricha-Sessilia. Ann. Univ. M. Curie-Sklodowska, 6 : 339 358.
37. Saitou, N. Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4 : 406 425.
38. Shimodaira, H. Hasegawa, M. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol., 16 : 1114 1116.
39. *and Other Methods). Version 4. Sinauer Associates, Sunderland, MA.
40. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. Higgins, D. G. 1997. The Clustal X windows interface: flexible strategies for multiple sequences alignment aided by quality analysis tools. Nucleic Acids Res., 25 : 4876 4882.
41. Utz, L. R. P. Eizirik, E. 2007. Molecular phylogenetics of subclass Peritrichia (Ciliophora: Oligohymenophorea) based on expanded analyses of 18S rRNA sequences. J. Eukaryot. Microbiol., 54 : 303 305.
42. Wilbert, N. 1975. Eine verbesserte Technik der Protargolimpragnation fur Ciliaten. Mikrokosmos, 64 : 171 179.
43. Williams, D. Clamp, J. C. 2007. A molecular phylogenetic investigation of Opisthonecta and related genera (Ciliophora, Peritrichia, Sessilida). J. Eukaryot. Microbiol., 54 : 317 323.
44. Xu, K. Song, W. 1998. A morphological study on a new species of gill parasitic ciliate, Urceolaria cheni nov. spec. from the clam Scapharca subcrenata. J. Fish. Sci. China, 5 : 13 17. (in Chinese with English summary)
45. Xu, K., Song, W. Warren, A. 1999. Trichodinid ectoparasites (Ciliophora: Peritrichida) from the gills of mariculture molluscs in China, with the descriptions of four news species of Trichodina Ehrenberg, 1838. Syst. Parasitol., 42 : 229 237.
46. Xu, K., Song, W. Warren, A. 2000. Observations on trichodinid ectoparasites (Ciliophora: Peritricha) from the gills of maricultured molluscs in China, with descriptions of three new species of Trichodina Ehrenberg, 1838. Syst. Parasitol., 45 : 17 24.
47. Xu, K., Song, W., Lei, Y., Choi, J. K. Warren, A. 2000. Diagnoses and probable phylogenetic relationships of the genera in the family Trichodinidae (Ciliophora, Peritrichia). Yellow Sea, 6 : 42 49.