A UVB-hypersensitive mutant in Arabidopsis thaliana is defective in the DNA damage response

Plant Journal

Volumn 60, Issue 3, 2009, Pages 509-517

  Sakamoto, Ayako N ^a   Lan, Vo Thi Thuong ^a,b   Puripunyavanich, Vichai ^a,c   Hase, Yoshihiro ^a   Yokota, Yuichiro ^a   Shikazono, Naoya ^a   Nakagawa, Mayu ^a   Narumi, Issay ^a   Tanaka, Atsushi ^a  

^a JAPAN ATOMIC ENERGY AGENCY   (Japan)

^b VIETNAM NATIONAL UNIVERSITY   (Viet Nam)

^c Thailand Institute of Nuclear Technology   (Thailand)

Author keywords

ATR; Cell cycle; Checkpoint; DNA damage; Hydroxyurea; Ultraviolet light

Indexed keywords

ARABIDOPSIS PROTEIN; PLANT DNA;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; CHEMISTRY; DNA DAMAGE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; MUTATION; PLANT CHROMOSOME; PROTEIN MULTIMERIZATION; RADIATION EXPOSURE; ULTRAVIOLET RADIATION;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CHROMOSOMES, PLANT; DNA DAMAGE; DNA, PLANT; GENE EXPRESSION REGULATION, PLANT; MOLECULAR SEQUENCE DATA; MUTATION; PROTEIN MULTIMERIZATION; ULTRAVIOLET RAYS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA;

EID: 70350474274     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2009.03974.x     Document Type: Article

References (40)

1. Ahmad, M., Jarillo, J.A., Klimczak, L.J., Landry, L.G., Peng, T., Last, R.L. Cashmore, A.R. (1997) An enzyme similar to animal type II photolyases mediates photoreactivation in Arabidopsis. Plant Cell, 9, 199 207.
2. Bao, S., Tibbetts, R.S., Brumbaugh, K.M., Fang, Y., Richardson, D.A., Ali, A., Chen, S.M., Abraham, R.T. Wang, X.F. (2001) ATR/ATM-mediated phosphorylation of human Rad17 is required for genotoxic stress responses. Nature, 411, 969 974.
3. Bell, C.J. Ecker, J.R. (1994) Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics, 19, 137 144.
4. Bentley, N.J., Holtzman, D.A., Flaggs, G., Keegan, K.S., DeMaggio, A., Ford, J.C., Hoekstra, M. Carr, A.M. (1996) The Schizosaccharomyces pombe rad3 checkpoint gene. EMBO J. 15, 6641 6651.
5. Britt, A.B. (1999) Molecular genetics of DNA repair in higher plants. Trends Plant Sci. 4, 20 25.
6. Britt, A.B., Chen, J.-J., Wykoff, D. Mitchell, D. (1993) A UV-sensitive mutant of Arabidopsis defective in the repair of pyrimidine-pyrimidinone(6-4) dimers. Science, 261, 1571 1574.
7. Colón-Carmona, A., You, R., Haimovitch-Gal, T. Doerner, P. (1999) Spatio-temporal analysis of mitotic activity with a labile cyclin-GUS fusion protein. Plant J. 20, 503 508.
8. Cortez, D., Guntuku, S., Qin, J. Elledge, S.J. (2001) ATR and ATRIP: partners in checkpoint signalling. Science, 294, 1713 1716.
9. 2-phase cell-cycle checkpoint in Arabidopsis thaliana. Plant Cell, 16, 1091 1104.
10. Culligan, K.M., Robertson, C.E., Foreman, J., Doerner, P. Britt, A.B. (2006) ATR and ATM play both distinct and additive roles in response to ionizing radiation. Plant J. 48, 947 961.
11. Curtis, M.J. Hays, J.B. (2007) Tolerance of dividing cells to replication stress in UVB-irradiated Arabidopsis roots: requirements for DNA translesion polymerases η and ζ. DNA Repair, 6, 1341 1358.
12. De Schutter, K., Joubès, J., Cools, T. et al. (2007) Arabidopsis WEE1 kinase controls cell cycle arrest in response to activation of the DNA integrity checkpoint. Plant Cell, 19, 211 225.
13. Edward, R.J., Bentlay, N.J. Carr, A.M. (1999) A Rad3-Rad26 complex responds to DNA damage independently of other checkpoint proteins. Nature Cell Biol. 1, 393 396.
14. Gallego, F., Fleck, O., Li, A., Wyrzykowska, J. Tinland, B. (2000) AtRAD1, a plant homologue of human and yeast nucleotide excision repair endonucleases, is involved in dark repair of UV damages and recombination. Plant J. 21, 507 518.
15. Gao, M.-J. Murphy, T.M. (2001) Alterative forms of formamidopyrimidine- DNA glycosylase from Arabidopsis thaliana. Photochem. Photobiol. 73, 128 134.
16. Garcia, V., Salanoubat, M., Choisne, N. Tissier, A. (2000) An ATM homologue from Arabidopsis thaliana: complete genomic organization and expression analysis. Nucleic Acids Res. 28, 1692 1699.
17. Garcia, V., Bruchet, H., Comescasse, D., Granier, F., Bouchez, D. Tissier, A. (2003) AtATM is essential for meiosis and the somatic response to DNA damage in plants. Plant Cell, 15, 119 132.
18. García-Ortiz, M.V., Ariza, R.R. Roldán-Arjona, T. (2001) An OGG1 orthologue encoding a functional 8-oxoguanine DNA glycosylase/lyase in Arabidopsis thaliana. Plant Mol. Biol. 47, 795 804.
19. Heffernan, T.P., Simpson, D.A., Frank, A.R., Heinloth, A.N., Paules, R.S., Cordeiro-Stone, M. Kaufmann, W.K. (2002) An ATR- and Chk1-dependent S checkpoint inhibits replicon initiation following UVC-induced DNA damage. Mol. Cell. Biol. 22, 8552 8561.
20. Heitzeberg, F., Chen, I.P., Hartung, F., Orel, N., Angelis, K.J. Puchta, H. (2004) The Rad17 homologue of Arabidopsis is involved in the regulation of DNA damage repair and homologous recombination. Plant J. 38, 954 968.
21. Itakura, E., Takai, K.K., Umeda, K., Kimura, M., Ohsumi, M., Tamai, K. Matsuura, A. (2004a) Amino-terminal domain of ATRIP contributes to intranuclear relocation of the ATR-ATRIP complex following DNA damage. FEBS Lett. 577, 289 293.
22. Itakura, E., Umeda, K., Sekoguchi, E., Takata, H., Ohsumi, M. Matsuura, A. (2004b) ATR-dependent phosphorylation of ATRIP in response to genotoxic stress. Biochem. Biophys. Res. Commun. 323, 1197 1202.
23. Itakura, E., Sawada, I. Matsuura, A. (2005) Dimerization of the ATRIP protein through the coiled-coil motif and its implication to the maintenance of stalled replication forks. Mol. Biol. Cell, 16, 5551 5562.
24. Karimi, M., Inze, D. Depicker, A. (2002) Gateway vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 7, 193 195.
25. Kitamura, S., Shikazono, N. Tanaka, A. (2004) TRANSPARENT TESTA 19 is involved in the accumulation of both anthocyanins and proanthocyanidins in Arabidopsis. Plant J. 37, 104 114.
26. Konieczny, A. Ausubel, F.M. (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype specific PCR-based markers. Plant J. 4, 403 410.
27. Liu, Z., Hall, J.D. Mount, D.W. (2001) Arabidopsis UVH3 gene is a homolog of the Saccharomyces cerevisiae RAD2 and human XPG DNA repair genes. Plant J. 26, 329 338.
28. Lupas, A., Van Dyke, M. Stock, J. (1991) Predicting coiled coils from protein sequences. Science, 252, 1162 1164.
29. Nakajima, S., Sugiyama, M., Iwai, S., Hitomi, K., Otoshi, E., Kim, S.-T., Jiang, C.-Z., Todo, T., Britt, A.B. Yamamoto, K. (1998) Cloning and characterization of a gene (UVR3) required for photorepair of 6-4 photoproducts in Arabidopsis thaliana. Nucleic Acids Res. 26, 638 644.
30. 2 checkpoint in rodent cells. Mol. Cell. Biol. 15, 3722 3730.
31. Paciotti, V., Clerici, M., Lucchini, G. Longhese, M.P. (2000) The checkpoint protein Ddc2, functionally related to S. pombe Rad26, interacts with Mec1 and is regulated by Mec1-dependent phosphorylation in budding yeast. Genes Dev. 14, 2046 2059.
32. Rahman, A., Nakasone, A., Chhun, T., Ooura, C., Biswas, K.K., Uchimiya, H., Tsurumi, S., Baskin, T.I., Tanaka, A. Oono, Y. (2006) A novel small acidic protein 1 (SMAP1) mediates responses of the Arabidopsis root to the synthetic auxin 2,4-dichlorophenoxyacetic acid. Plant J. 47, 788 801.
33. Sakamoto, A., Lan, V.T.T., Hase, Y., Shikazono, N., Matsunaga, T. Tanaka, A. (2003) Disruption of the AtREV3 gene causes hypersensitivity to ultraviolet B light and γ-rays in Arabidopsis: implication of the presence of a translesion synthesis mechanism in plants. Plant Cell, 15, 2042 2057.
34. Schiffer, M. Edmundson, A.B. (1967) Use of the helical wheels to represent the structure of protein and to identify segments with helical potential. Biophys. J, 7, 121 135.
35. Shikazono, N., Suzuki, C., Kitamura, S., Watanabe, H., Tano, S. Tanaka, A. (2005) Analysis of mutations induced by carbon ions in Arabidopsis thaliana. J. Exp. Bot. 56, 587 596.
36. 1 checkpoint control in the yeast Saccharomyces cerevisiae following exposure to DNA-damaging agents. Genetics, 138, 271 281.
37. Sweeney, T.R., Britt, A.B. Culligan, K.M. (2009) The Arabidopsis ATRIP ortholog is required for programmed response to replication inhibitors. Plant J. doi :.
38. Takahashi, S., Sakamoto, A., Sato, S., Kato, T., Tabata, S. Tanaka, A. (2005) Roles of Arabidopsis AtREV1 and AtREV7 in translesion synthesis. Plant Physiol. 138, 870 881.
39. Waterworth, W.M., Altun, C., Armstrong, S.J., Roberts, N., Dean, P.J., Young, K., Weil, C.F., Bray, C.M. West, C.E. (2007) NBS1 is involved in DNA repair and plays a synergistic role with ATM in mediating meiotic homologous recombination. Plant J. 52, 41 52.
40. Zhao, H. Piwnica-Worms, H. (2001) ATR-mediated checkpoint pathways regulate phosphorylation and activation of human Chk1. Mol. Cell. Biol. 21, 4129 4139.