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Volumn 146, Issue 1-2, 2009, Pages 36-40

Genetic diversity of genotype G1 rotaviruses co-circulating in western India

Author keywords

Genotype G1; India; Lineages; Rotaviruses; Sublineages

Indexed keywords

AMINO ACID; PROTEIN VP7;

EID: 70350411864     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2009.08.007     Document Type: Article
Times cited : (13)

References (36)
  • 2
    • 0141646456 scopus 로고    scopus 로고
    • Genetic variation in the VP7 gene of human rotavirus isolated in Montevideo-Uruguay from 1996-1999
    • Berois M., Libersou S., Russi J., Arbiza J., and Cohen J. Genetic variation in the VP7 gene of human rotavirus isolated in Montevideo-Uruguay from 1996-1999. J. Med. Virol. 71 (2003) 456-462
    • (2003) J. Med. Virol. , vol.71 , pp. 456-462
    • Berois, M.1    Libersou, S.2    Russi, J.3    Arbiza, J.4    Cohen, J.5
  • 3
    • 0026720465 scopus 로고
    • A bovine rotavirus serotype 1: serologic characterization of the virus and nucleotide sequence determination of the structural glycoprotein VP7 gene
    • Blackhall J., Bellinzoni R., Mattion N., Estes M.K., Torre J.La., and Magnusson G. A bovine rotavirus serotype 1: serologic characterization of the virus and nucleotide sequence determination of the structural glycoprotein VP7 gene. Virology 189 (1992) 833-837
    • (1992) Virology , vol.189 , pp. 833-837
    • Blackhall, J.1    Bellinzoni, R.2    Mattion, N.3    Estes, M.K.4    Torre, J.La.5    Magnusson, G.6
  • 4
    • 70350359501 scopus 로고    scopus 로고
    • Chitambar, S.D., Deshpande, J., Kang, G., Kulkarni, M., Naik, T.N., Arora, R., Gentsch, J.R., Glass, R.I., Gupte, M.D., Mukherji, D., Parashar, U.D., Venkatasubramaniam, S., in press. A multi-centric hospital based surveillance for rotavirus disease and strains among Indian children <5 years of age. J. Infect. Dis.
    • Chitambar, S.D., Deshpande, J., Kang, G., Kulkarni, M., Naik, T.N., Arora, R., Gentsch, J.R., Glass, R.I., Gupte, M.D., Mukherji, D., Parashar, U.D., Venkatasubramaniam, S., in press. A multi-centric hospital based surveillance for rotavirus disease and strains among Indian children <5 years of age. J. Infect. Dis.
  • 5
    • 0030765735 scopus 로고    scopus 로고
    • Single point mutations may affect the serotype reactivity of serotype G11 porcine rotavirus strains: a widening spectrum?
    • Ciarlet M., Hoshino Y., and Liprandi F. Single point mutations may affect the serotype reactivity of serotype G11 porcine rotavirus strains: a widening spectrum?. J. Virol. 71 (1997) 8213-8220
    • (1997) J. Virol. , vol.71 , pp. 8213-8220
    • Ciarlet, M.1    Hoshino, Y.2    Liprandi, F.3
  • 6
    • 0026041113 scopus 로고
    • Relation of VP7 amino acid sequence to monoclonal antibody neutralization of rotavirus and rotavirus monotype
    • Coulson B.S., and Kirkwood C. Relation of VP7 amino acid sequence to monoclonal antibody neutralization of rotavirus and rotavirus monotype. J. Virol. 65 (1991) 5968-5974
    • (1991) J. Virol. , vol.65 , pp. 5968-5974
    • Coulson, B.S.1    Kirkwood, C.2
  • 7
    • 0033046447 scopus 로고    scopus 로고
    • Genetic and antigenic variation of capsid protein VP7 of serotype G1 human rotavirus isolates
    • Diwakarla C.S., and Palombo E.A. Genetic and antigenic variation of capsid protein VP7 of serotype G1 human rotavirus isolates. J. Gen. Virol. 80 (1999) 341-344
    • (1999) J. Gen. Virol. , vol.80 , pp. 341-344
    • Diwakarla, C.S.1    Palombo, E.A.2
  • 8
    • 0022517960 scopus 로고
    • Location of the major antigenic sites involved in rotavirus serotype-specific neutralization
    • Dyall-Smith M.L., Lazdins I., Tregear G.W., and Holmes I.H. Location of the major antigenic sites involved in rotavirus serotype-specific neutralization. Proc. Natl. Acad. Sci. U.S.A. 83 (1986) 3465-3468
    • (1986) Proc. Natl. Acad. Sci. U.S.A. , vol.83 , pp. 3465-3468
    • Dyall-Smith, M.L.1    Lazdins, I.2    Tregear, G.W.3    Holmes, I.H.4
  • 9
    • 0024408580 scopus 로고
    • Rotavirus gene structure and function
    • Estes M.K., and Cohen J. Rotavirus gene structure and function. Microbiol. Rev. 53 (1989) 410-449
    • (1989) Microbiol. Rev. , vol.53 , pp. 410-449
    • Estes, M.K.1    Cohen, J.2
  • 10
    • 0001581287 scopus 로고    scopus 로고
    • Rotaviruses and their replication
    • Knipe D.M., Howley P.M., et al. (Eds), Lippincott Williams &Wilkins, Philadelphia
    • Estes M.K. Rotaviruses and their replication. In: Knipe D.M., Howley P.M., et al. (Eds). Fields Virology. 4th ed. (2001), Lippincott Williams &Wilkins, Philadelphia 1747-1785
    • (2001) Fields Virology. 4th ed. , pp. 1747-1785
    • Estes, M.K.1
  • 12
    • 0025108292 scopus 로고
    • Neutralization epitopes on rotavirus SA11 4fM outer capsid proteins
    • Gorziglia M., Larralde G., and Ward R.L. Neutralization epitopes on rotavirus SA11 4fM outer capsid proteins. J. Virol. 64 (1990) 4534-4539
    • (1990) J. Virol. , vol.64 , pp. 4534-4539
    • Gorziglia, M.1    Larralde, G.2    Ward, R.L.3
  • 14
    • 0028929581 scopus 로고
    • Is rotavirus a population of reassortants?
    • Gouvea V., and Brantly M. Is rotavirus a population of reassortants?. Trends Microbiol. 3 (1995) 159-162
    • (1995) Trends Microbiol. , vol.3 , pp. 159-162
    • Gouvea, V.1    Brantly, M.2
  • 15
    • 0026575151 scopus 로고
    • Identification ofVP7 epitopes associated with protection against human rotavirus illness or shedding in volunteers
    • Green K.Y., and Kapikian A.Z. Identification ofVP7 epitopes associated with protection against human rotavirus illness or shedding in volunteers. J. Virol. 66 (1992) 548-553
    • (1992) J. Virol. , vol.66 , pp. 548-553
    • Green, K.Y.1    Kapikian, A.Z.2
  • 16
    • 41549102977 scopus 로고    scopus 로고
    • Human rotavirus vaccines: too early for the strain to tell
    • Grimwood K., and Kirkwood C.D. Human rotavirus vaccines: too early for the strain to tell. Lancet 371 (2008) 1144-1145
    • (2008) Lancet , vol.371 , pp. 1144-1145
    • Grimwood, K.1    Kirkwood, C.D.2
  • 17
    • 0028336624 scopus 로고
    • Mapping of antigenic sites involved in serotype-cross-reactive neutralization on group A rotavirus outercapsid glycoprotein VP7
    • Hoshino Y., Nishikawa K., Benfield D.A., and Gorziglia M. Mapping of antigenic sites involved in serotype-cross-reactive neutralization on group A rotavirus outercapsid glycoprotein VP7. Virology 199 (1994) 233-237
    • (1994) Virology , vol.199 , pp. 233-237
    • Hoshino, Y.1    Nishikawa, K.2    Benfield, D.A.3    Gorziglia, M.4
  • 19
    • 23944490191 scopus 로고    scopus 로고
    • Epidemiological profile of rotaviral infection in India: challenges for the 21st century
    • Kang G., Kelkar S.D., Chitambar S.D., Ray P., and Naik T. Epidemiological profile of rotaviral infection in India: challenges for the 21st century. J. Infect. Dis. 192 (2005) S120-S126
    • (2005) J. Infect. Dis. , vol.192
    • Kang, G.1    Kelkar, S.D.2    Chitambar, S.D.3    Ray, P.4    Naik, T.5
  • 20
    • 0027244191 scopus 로고
    • Characterization of the neutralizing epitopes of VP7 of the Gottfried strain of porcine rotavirus
    • Kang S.Y., Benfield D.A., Gorziglia M., and Saif L.J. Characterization of the neutralizing epitopes of VP7 of the Gottfried strain of porcine rotavirus. J. Clin. Microbiol. 31 (1993) 2291-2297
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 2291-2297
    • Kang, S.Y.1    Benfield, D.A.2    Gorziglia, M.3    Saif, L.J.4
  • 21
    • 0035119362 scopus 로고    scopus 로고
    • Molecular characterization of the VP7 gene of Rotavirus isolated from a clinical sample of Calcutta, India
    • Khetawat D., Ghosh T., Bhattacharya M.K., Bhattacharya S.K., and Chakrabarti S. Molecular characterization of the VP7 gene of Rotavirus isolated from a clinical sample of Calcutta, India. Virus Res. 74 (2001) 53-58
    • (2001) Virus Res. , vol.74 , pp. 53-58
    • Khetawat, D.1    Ghosh, T.2    Bhattacharya, M.K.3    Bhattacharya, S.K.4    Chakrabarti, S.5
  • 22
    • 0026007824 scopus 로고
    • Analysis of the newly identified neutralization epitopes on VP7 of human rotavirus serotype 1
    • Kobayashi N., Taniguchi K., and Urasawa S. Analysis of the newly identified neutralization epitopes on VP7 of human rotavirus serotype 1. J. Gen. Virol. 72 (1991) 117-124
    • (1991) J. Gen. Virol. , vol.72 , pp. 117-124
    • Kobayashi, N.1    Taniguchi, K.2    Urasawa, S.3
  • 24
    • 0035123763 scopus 로고    scopus 로고
    • Genetic characterization of the rotaviruses associated with a nursery outbreak
    • Lee C.N., Lin C.C., Kao C.L., Zao C.L., Shih M.C., and Chen H.N. Genetic characterization of the rotaviruses associated with a nursery outbreak. J. Med. Virol. 63 (2001) 311-320
    • (2001) J. Med. Virol. , vol.63 , pp. 311-320
    • Lee, C.N.1    Lin, C.C.2    Kao, C.L.3    Zao, C.L.4    Shih, M.C.5    Chen, H.N.6
  • 25
    • 0031964298 scopus 로고    scopus 로고
    • Short sequences define genetic lineages: phylogenetic analysis of group A rotaviruses based on partial sequences of genome segments 4 and 9
    • Maunula L., and von Bonsdorff C.-H. Short sequences define genetic lineages: phylogenetic analysis of group A rotaviruses based on partial sequences of genome segments 4 and 9. J. Gen. Virol. 79 (1998) 321-332
    • (1998) J. Gen. Virol. , vol.79 , pp. 321-332
    • Maunula, L.1    von Bonsdorff, C.-H.2
  • 26
    • 0036161821 scopus 로고    scopus 로고
    • Application of restriction fragment length polymorphism analysis of VP7-encoding genes: fine comparison of Irish and global rotavirus isolates
    • O'Halloran F., Lynch M., Cryan B., and Fanning S. Application of restriction fragment length polymorphism analysis of VP7-encoding genes: fine comparison of Irish and global rotavirus isolates. J. Clin. Microbiol. 40 (2002) 524-531
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 524-531
    • O'Halloran, F.1    Lynch, M.2    Cryan, B.3    Fanning, S.4
  • 27
    • 0031014305 scopus 로고    scopus 로고
    • Characterization of five conserved genotypes of the mumps virus small hydrophobic (SH) protein gene
    • Orvell C., Kalantari M., and Johansson B. Characterization of five conserved genotypes of the mumps virus small hydrophobic (SH) protein gene. J. Gen. Virol. 78 (1997) 91-95
    • (1997) J. Gen. Virol. , vol.78 , pp. 91-95
    • Orvell, C.1    Kalantari, M.2    Johansson, B.3
  • 28
    • 34247581661 scopus 로고    scopus 로고
    • Detection and genetic characterization of group A rotavirus strains circulating among children with acute gastroenteritis in Japan
    • Phan T.G., Khamrin P., Quang T.D., Dey S.K., Takanashi S., Okitsu S., Maneekarn N., and Ushijima H. Detection and genetic characterization of group A rotavirus strains circulating among children with acute gastroenteritis in Japan. J. Virol. 81 (2007) 4645-4653
    • (2007) J. Virol. , vol.81 , pp. 4645-4653
    • Phan, T.G.1    Khamrin, P.2    Quang, T.D.3    Dey, S.K.4    Takanashi, S.5    Okitsu, S.6    Maneekarn, N.7    Ushijima, H.8
  • 29
    • 11244302672 scopus 로고    scopus 로고
    • Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine
    • Santos N., and Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev. Med. Virol. 15 (2005) 29-56
    • (2005) Rev. Med. Virol. , vol.15 , pp. 29-56
    • Santos, N.1    Hoshino, Y.2
  • 30
    • 60349114827 scopus 로고    scopus 로고
    • Characterization of novel VP7, VP4, and VP6 genotypes of a previously untypeable group A rotavirus
    • Solberg O.D., Hasing M.E., Trueba G., and Eisenberg J.N. Characterization of novel VP7, VP4, and VP6 genotypes of a previously untypeable group A rotavirus. Virology 385 (2009) 58-67
    • (2009) Virology , vol.385 , pp. 58-67
    • Solberg, O.D.1    Hasing, M.E.2    Trueba, G.3    Eisenberg, J.N.4
  • 31
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 32
    • 0023947513 scopus 로고
    • Cross reactive and serotype-specific neutralization epitopes on VP7 of human rotavirus: nucleotide sequence analysis of antigenic mutants selected with monoclonal antibodies
    • Taniguchi K., Hoshino Y., Nishikawa K., Green K.Y., Maloy W.L., Morita Y., Urasawa S., Kapikian A.Z., Chanock R.M., and Gorziglia M. Cross reactive and serotype-specific neutralization epitopes on VP7 of human rotavirus: nucleotide sequence analysis of antigenic mutants selected with monoclonal antibodies. J. Virol. 62 (1988) 1870-1874
    • (1988) J. Virol. , vol.62 , pp. 1870-1874
    • Taniguchi, K.1    Hoshino, Y.2    Nishikawa, K.3    Green, K.Y.4    Maloy, W.L.5    Morita, Y.6    Urasawa, S.7    Kapikian, A.Z.8    Chanock, R.M.9    Gorziglia, M.10
  • 33
    • 0027968068 scopus 로고
    • Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequencing weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequencing weighting, position-specific gap penalties and weight matrix choice. Nucleic Acid Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acid Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 34
    • 34249891918 scopus 로고    scopus 로고
    • Sequence analysis of the VP7 gene of human rotavirus G1 isolated in Japan, China, Thailand and Vietnam in the context of changing distribution of rotavirus G-types
    • Trinh Q.D., Nguyen T.A., Phan T.G., Khamrin P., Yan H., Le Hoang P., Maneekaran N., Yan L., Yagyu F., Okitsu S., and Ushijima H. Sequence analysis of the VP7 gene of human rotavirus G1 isolated in Japan, China, Thailand and Vietnam in the context of changing distribution of rotavirus G-types. J. Med. Virol. 79 (2007) 1009-1016
    • (2007) J. Med. Virol. , vol.79 , pp. 1009-1016
    • Trinh, Q.D.1    Nguyen, T.A.2    Phan, T.G.3    Khamrin, P.4    Yan, H.5    Le Hoang, P.6    Maneekaran, N.7    Yan, L.8    Yagyu, F.9    Okitsu, S.10    Ushijima, H.11
  • 35
    • 0027501117 scopus 로고
    • Genetic variation in the VP7 gene of human rotavirus serotype 1 (G1 type) isolated in Japan and China
    • Xin K.-Q., Morikawa S., Fang Z.-Y., Mukoyama A., Okuda K., and Ushijima H. Genetic variation in the VP7 gene of human rotavirus serotype 1 (G1 type) isolated in Japan and China. Virology 197 (1993) 813-816
    • (1993) Virology , vol.197 , pp. 813-816
    • Xin, K.-Q.1    Morikawa, S.2    Fang, Z.-Y.3    Mukoyama, A.4    Okuda, K.5    Ushijima, H.6
  • 36
    • 67650508712 scopus 로고    scopus 로고
    • Characterization of VP7 and VP4 genes of rotavirus strains: 1990-1994 and 2000-2002
    • Zade J.K., Chhabra P., and Chitambar S.D. Characterization of VP7 and VP4 genes of rotavirus strains: 1990-1994 and 2000-2002. Epidemiol. Infect. 137 (2009) 936-942
    • (2009) Epidemiol. Infect. , vol.137 , pp. 936-942
    • Zade, J.K.1    Chhabra, P.2    Chitambar, S.D.3


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