Supraspecies relationships in the subfamily Arvicolinae (rodentia, cricetidae): An unexpected result of nuclear gene analysis

Molecular Biology

Volumn 43, Issue 5, 2009, Pages 834-846

  Abramson, N I ^a   Lebedev, V S ^b   Tesakov, A S ^c   Bannikova, A A ^b  

^a ZOOLOGICAL INSTITUTE   (Russian Federation)

^b MOSCOW STATE UNIVERSITY   (Russian Federation)

^c GEOLOGICAL INSTITUTE   (Russian Federation)

Author keywords

GHR; LCAT; Molecular phylogeny; Molecular systematics; Nuclear genes; Phylogenetic analysis; Rodents; Voles

Indexed keywords

ARVICOLINAE; CRICETIDAE; INSECTIVORA; MURIDAE; RODENTIA; SCIUROGNATHI;

EID: 70350389388     PISSN: 00268933     EISSN: 16083245     Source Type: Journal    
DOI: 10.1134/S0026893309050148     Document Type: Article

References (45)

1. Zazhigin V.S. 1980. Gryzuny pozdnego pliotsena i antropogena yuga Zapadnoi Sibiri (Late Ploicene and Anthropogene Rodents in the South of Western Siberia). Moscow: Nauka.
2. Nesin V.a. 1996. The Most Ancient Fossil Vole (Rodentia, Cricetidae) From The Lower Pontic Of Southern Ukraine. Vestn. Zool.3, 74-75.
3. Topachevskii, V.A. and Skorik, A.F., 1977. Gryzuny rannetamanskoi fauny tiligul'skogo razreza (Rodents of the Early Taman Fauna from the Tiligul Pit). Kiev: Naukova Dumka.
4. Erbaeva M.A. 1970. Istoriya antropogenovoi fauny zaitseobraznykh i gryzunov Selenginskogo srednegor'ya (History of the Anthropogenic Lagomorph and Rodent Fauna of the Selenga Middle Mountain Region). Moscow: Nauka.
5. Gromov I.M. Polyakov I.Ya., 1977. Fauna SSSR. Mlekopitayushchie (The USSR Fauna: Mammals), vol. 3, issue 8. Leningrad: Nauka.
6. Repenning C.A., Grady F.M. 1988. The microtine rodents of the Cheetah Room Fauna, Hamilton Cave, West Virginia, and the spontaneous origin of Synaptomys. United States Geological Survey Bulletin.1853, 1-32.
7. Kowalski K. 2001. Pleistocene rodents of Europe. Folia Quaternaria.72, 1-389.
8. Hinton M.A.C. 1926. Monograph of voles and lemmings (Microtinae) living and extinct. London: British Museum (Natural History).
9. Kretzoi M. 1969. Skizze einer Arvicoliden Phylogenie-Stand. Vert. Hung. Mus. Hist.-Nat. Hung.11, 155-192.
10. Gromov I.M. 1972. Supraspecific taxonomic categories in the vole subfamily, Microtinae, and their probable kinship connections. Sb. Tr. Zool. Muz. Mosk. Gos. Univ.13, 8-32.
11. Agajanyan A.K., Yatsenko V.N. 1984. Phylogenetic relationships of North Eurasian voles. In: Problemy izmenchivosti i filogenii mlekopitayushchikh (Problems in Mammal Variation and Phylogeny), Moscow: Mosk. Gos. Univ., pp. 135-190.
12. Zagorodnyuk I.V. 1990. Karyotypic variation and taxonomy of gray voles (Rodentia, Arvicolini): 1. Species composition and chromosome numbers. Vestn. Zool.2, 26-37.
13. Modi W.S. 1987. Phylogenetic analyses of chromosomal banding patterns among the Nearctic Arvicolidae (Mammalia: Rodentia). Syst. Zool.36, 109-136.
14. Mezhzherin S.V., Morozov-Leonov S.Yu., Kuznetsova I.A., 1995. Biochemical variation and genetic divergence of palearctic voles (Arvicolidae): Subgenus Terricola and genera Lemmus Link 1795, Dicrostonyx Gloger 1841, Lagurus Gloger 1842, and Ellobius Fischer von Waldheim 1814. Genetika (Moscow). 31, 788-797.
15. Chaline J., Graf J.-D. 1988. Phylogeny of the Arvicolidae (Rodentia): biochemical and paleontological evidence. J. Mammal.69, 22-33.
16. Modi W.S. 1996. Phylogenetic history of LINE-1 among arvicolid rodents. Mol. Biol. Evol.13, 633-641.
17. Conroy C.J., Cook J.A. 1999. MtDNA evidence for repeated pulses of speciation within arvicoline and murid rodents. J. Mammal. Evol.6, 221-245.
18. Galewski T., Tilak M., Sanchez S., Chevret P., Paradis E., Douzery E.J.P. 2006. The evolutionary radiation of Arvicolinae rodents (voles and lemmings): relative contribution of nuclear and mitochondrial DNA phylogenies. BMC Evol. Biol.6, 1-17.
19. Buzan E., Krustufek B., Hanfling B., Hutchinson W. 2008. Mitochondrial phylogeny of Arvicolinae using comprehensive taxonomic sampling yields new insights. Biol. J. Linnean Soc.94, 825-835.
20. Hooper E.T., Hart B. 1962. A synopsis of recent North American microtine rodents. Miscellaneous publications. Museum Zoology, University of Michigan.120, 1-68.
21. McKenna M.C., Bell S.K. 1997. Classification of mammals above the species level. N.Y.: Columbia Univ. Press.
22. Martin Y., Gerlach G., Schlotterer C., Meyer A. 2000. Molecular phylogeny of European muroid rodents based on complete cytochrome b sequences. Mol. Phylogen. Evol.1, 37-47.
23. Musser G.G., Carleton M.D. 2005. Superfamily Muroidea. In: Mammal species of the world. A taxonomic and geographic reference. Eds Wilson D.E., Reeder D.-A.M. 3rd edn. V. 2. Baltimore, MD: John Hopkins Univ. Press, 894-1531.
24. Shenbrot G.I., Krasnov B.R. 2005. An atlas of the geographic distribution of the arvicoline rodents of the world (Rodentia, Muridae, Arvicolinae). Sofia: Pensoft.
25. Jaarola M., Martinkova N., Gunduz I., Brunhoff C., Zima J., Nadachowski A., Amori G., Bulatova N.S., Chondropoulos B., Fraguedakis-Tsolis S., Gonzalez-Esteban J., Lopez-Fuster M.J., Kandaurov A.S., Kefelioglu H., Mathias M.D., Villate I., Searle J.B. 2004. Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae, Rodentia) inferred from mitochondrial DNA sequences. Mol. Phylogen. Evol.33, 647-663.
26. Springer M.S., DeBry R.W., Douady C., Amrine H.M., Madsen O., de Jong W.W, Stanhope M.J. 2001. Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny reconstruction. Mol. Biol. Evol.18, 132-143.
27. Halanych K.M., Robinson T.J. 1999. Multiple substitutions affect the phylogenetic utility of cytochrome b and 12S rDNA data: Examining a rapid radiation in leporid (Lagomorpha) evolution. J. Mol. Evol.48, 369-379.
28. Michaux J., Catzfelius F. 2000. The bushlike radiation of muroid Rodents is exemplified by the molecular phylogeny of the LCAT nuclear gene. Mol. Phylogen. Evol.17, 280-293.
29. Robinson M., Catzeflis F., Briolay J., Mouchiroud D. 1997. Molecular phylogeny of rodents, with special emphasis on murids: evidence from nuclear gene LCAT. Mol. Phylogenet. Evol.8, 423-434.
30. Adkins R.M., Gelke E.L., Rowe D., Honeycutt R.L. 2001. Molecular phylogeny and divergence time estimates for major rodent groups: evidence from multiple genes. Mol. Biol. Evol., 18, 777-791.
31. Steppan S.J., Adkins R.M., Anderson J. 2004. Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes. Syst. Biol.53, 533-553.
32. Farris J.S., Kallersjo M., Kluge A.G., Bult C. 1995. Constructing a significance test for incongruence. Syst. Biol.44, 570-572.
33. Posada D., Crandall K.A. 1998. Modeltest: Testing the model of DNA substitution. Bioinformatics.14, 817-818.
34. Thorne J.L., Kishino H. 2002. Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol.51, 689-702.
35. Steppan S.J., Adkins R.M., Spinks P.Q., Hale C. 2005. Multigene phylogeny of the Old World mice, Murinae, reveals distinct geographic lineages and the declining utility of mitochondrial genes compared to nuclear genes. Mol. Phylogen. Evol.37, 370-388.
36. Barker F.K., Lutzoni F.M. 2002. The utility of the incongruence length difference test. Syst. Biol.51, 625-637.
37. Lebedev V.S., Ivanova N.V., Pavlova, N.K., Poltoraus A.B., 2003. Molecular phylogeny of Palearctic hamsters. In: Sistematika, filogeniya i paleontologiya melkikh mlekopitayushchikh (Systematics, Phylogeny, and Paleontology of Small Mammals). Eds. Averyanov A.O., Abramson N.I. St. Petersburg: Zool. Inst. Ross. Akad. Nauk, pp. 114-118.
38. Robovsky J., Ricankova V., Zrzavy J. 2008. Phylogeny of arvicolinae (Mammalia, Cricetidae): utility of morphological and molecular data sets in a recently radiating clade. Zool. Scr.37, 571-590.
39. Waddell P. J., Cao Y. Hauf J., Hasegawa M. 1999. Using novel methods to evaluate mammalian mtDNA and detect internal conflicts: including AA invariant sites-Log-Det and site stripping, with special reference to the position of hedgehog, armadillo, and elephant. Syst. Biol.48, 31-53.
40. Lin Y.-H., McLenachan P.A., Gore A.R, Phillips M.J., Ota R., Hendy M.D., Penny D., 2002. Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling. Mol. Biol. Evol.19, 2060-2070.
41. Agajanyan A.K. 1992. New volelike rodents (Mammalia, Rodentia) from the Russian Plain Pliocene. Paleontol. Zh.2, 99-111.
42. Gromov I.M., Erbaeva M.A. 1995. Mlekopitayushchie fauny Rossii i sopredel'nykh territorii (Zaitseobraznye i gryzuny) (Mammals in the Fauna of Russia and Neighboring Countries: Lagomorphs and Rodents). St Petersburg: Nauka.
43. Pavlinov I.Ya. 2003. Sistematika sovremennykh mlekopitayushchikh (The System of Recent Mammals). Moscow: Mosk. Gos. Univ.
44. Zubtsova G.E. 1978. Morphological features of incisor structure in Burrowing rodents as related to the type of burrowing: 1. Mole rats (Spalax), mole voles (Ellobius), and five-toed jerboas (Allactaginae). In: Funktsional'naya morfologiya i sistematika mlekopitayushchikh (Functional Morphology and Taxonomy of Mammals). Leningrad: Zool. Inst. Akad. Nauk SSSR, pp. 105-108.
45. Zheng S.H., Zhang Z.Q., Cui N. 2004. On some species of Prosiphneus (Siphneidae, Rodentia) and the origin of Siphneidae. Vertebrata PalAsiatica, 42, 297-315.