Phylogenetic history of LINE-1 among arvicolid rodents

Molecular Biology and Evolution

Volumn 13, Issue 5, 1996, Pages 633-641

  Modi, William S ^a,b  

^a NATIONAL CANCER INSTITUTE   (United States)

^b SAIC FREDERICK INC   (United States)

Author keywords

arvicolid rodent evolution; LINE 1; phylogenetic reconstruction

Indexed keywords

ARTICLE; EVOLUTION; GENETIC VARIABILITY; NONHUMAN; PHYLOGENY; RODENT; SOUTHERN BLOTTING; SPECIES DIFFERENTIATION; TAXONOMY;

EID: 0029966140     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025623     Document Type: Article

References (31)

1. CASAVANT, N. C., S. C. HARDIES, F. D. FUNK, M. B. COMER, M. H. EDGELL, and C. A. Hutchison III. 1986. Extensive movement of LINES ONE sequences in b-globin loci of Mus caroli and Mus domesticus. Mol. Cell. Biol. 8:4669-4674.
2. CATZEFLIS, F. M., F. H. SHELDON, J. E. ALQUIST, and C. G. SIBLEY. 1987. DNA-DNA hybridization evidence of the rapid rate of muroid rodent evolution. Mol. Biol. Evol. 4:242-253.
3. CHALINE, J. 1987. Arvicolid data (Arvicolidae, Rodentia) and evolutionary concepts. Pp. 237-310 in M. K. HECHT, B. WALLACE, and G. T. PRANCE, eds. Evolutionary Biology. Vol. 21. Plenum Press, New York.
4. CHALINE, J., and J.-D. GRAF. 1988. Phylogeny of the Arvicolidae (Rodentia): biochemical and palentological evidence. J. Mammal. 69:22-33.
5. CHALINE, J., and P. MEIN. 1979. Les rongeurs et l'évolution. Doin, Paris.
6. D'AMBROSIO, E., S. D. WAITZKIN, F. R. WITNEY, A. SALEMME, and A. V. FURANO. 1986. Structure of the highly repeated, long interspersed DNA family (LINE or L1Rn) of the rat. Mol. Cell. Biol. 6:411-424.
7. ELLERMAN, J. R. 1941. The families and genera of living rodents. Vol. II. British Museum (Natural History), London.
8. FANNING, T. G. 1983. Size and structure of the highly repetitive BAM HI element in mice. Nucleic Acids Res. 11:5073-5091.
9. HARDIES, S. C., S. L. MARTIN, C. F. VOLIVA, C. A. HUTCHISON III, and M. H. EDGELL. 1986. An analysis of replacement and synonymous changes in the rodent L1 repeat family. Mol. Biol. Evol. 3:109-125.
10. HINTON, M. A. 1926. Monograph of the voles and lemmings (Microtinae) living and extinct. London, British Museum (Natural History).
11. HOOPER, E. T., and B. HART. 1962. A synopsis of recent North American microtine rodents. Misc. Publ. Mus Zool. Univ. Mich. 120:1-68.
12. HUTCHISON, C. A. III, S. C. HARDIES, D. D. LOEB, W. R. SHEEHEE, M. H. EDGELL. 1989. LINES and related retroposons: long interspersed repeated sequences in the eukaryotic genome. Pp. 596-598 in D. E. BERG and M. H. HOWE, eds. Mobile DNA. American Society for Microbiology, Washington, D.C.
13. JUBIER-MAURIN, V., B. J. DOD, M. BELLIS, M. PIECHACZYK, and G. ROIZES. 1985. Comparative study of the L1 family in the genus Mus: possible role of retroposition and conversion events in its concerted evolution. J. Mol. Biol. 184: 547-564.
14. KASS, D. H., F. G. BERGER, and W. D. DAWSON. 1992. The evolution of coexisting highly divergent LINE-1 subfamilies within the rodent genus Peromyscus. J. Mol. Evol. 35:472-485.
15. KOENIGSWALD, W. V., and L. D. MARTIN. 1984. Revision of the fossil and recent Lemminae (Rodentia, Mammalia). Spec. Publ. Carnegie Mus. Nat. Hist. 9:122-137.
16. KRETZOI, M. 1969. Skizze einer Arvicoliden-Phylogenie Stand 1969. Vetebrata Hungarica 11:155-193.
17. LOEB, D. D., R. W. PADGETT, S. C. HARDIES, W. R. SHEHEE, M. B. COMER, M. H. EDGELL, and C. A. HUTCHISON III. 1986. The sequence of a large L1Md element reveals a tandemly repeated 5′ end and several features found in retrotransposons. Mol. Cell. Biol. 6:168-182.
18. MARTIN, S. L., C. F. VOLIVA, S. C., HARDIES, M. H. EDGELL, and C. A. HUTCHISON III. 1985. Tempo and mode of concerted evolution in the L1 repeat family of mice. Mol. Biol. Evol. 2:127-140.
19. MILLER, G. S. JR. 1896. The genera and subgenera of voles and lemmings. N. Am. Fauna 12:1-84.
20. MODI, W. S. 1987. Phylogenetic analyses of chromosomal banding patterns among the Neartic Arvicolidae (Mammalia: Rodentia). Syst. Zool. 36:109-136.
21. MODI, W. S. 1993a. Heterogeneity in the concerted evolution process of a tandem satellite array in meadow mice (Microtus). J. Mol. Evol. 37:48-56.
22. MODI, W. S. 1993b. Comparative analyses of heterochromatin in Microtus: sequence heterogeneity and localized expansion and contraction of satellite DNA arrays. Cytogenet. Cell Genet. 62:142-148.
23. PASCALE, E., C. LIU, E. VALLE, K. USDIN, and A. V. FURANO. 1993. The evolution of long interspersed repeated DNA (L1, LINE 1) as revealed by the analysis of an ancient rodent L1 DNA family. J. Mol. Evol. 36:9-20.
24. REPENNING, C. A. 1980. Faunal exchanges between Siberia and North America. Can. J. Anthropol. 1:37-44.
25. SCOTT, A. F., B. J. SCHMEKPEPER, M. ABDELRAZIK, C. T. COMEY, B. O'HARA, J. P. ROSSITER, T. COOLEY, P. HEATH, K. D. SMITH, and L. MARGOLET. 1987. Origin of the human L1 elements: proposed progenitor genes deduced from a consensus DNA sequence. Genomics 1:113-125.
26. SIMPSON, G. 1945. The principles of classification and a classification of mammals. Bull. Am. Mus. Nat. Hist. 85:1-350.
27. SWOFFORD, D. L. 1993. PAUP: phylogenetic analysis using parsimony. Version 3.1. Smithsoman Institution, Washington, D.C.
28. VANLERBERGHE, F., F. BONHOMME, C. A. HUTCHISON III, and M. H. EDGELL. 1993. A major difference between the divergence patterns within the Lines-1 families in mice and voles. Mol. Biol. Evol. 10:719-731.
29. WEINER, A. M., P. L. DEININGER, and A. EFTRADIATIS. 1986. The reverse flow of genetic information: pseudogenes and transposable elements derived from non-viral cellular RNA. Annu. Rev. Biochem. 55:631-661.
30. XIONG, Y., and T. H. EICKBUSH. 1990. Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J 9:3353-3362.
31. ZAKRZEWSKI, R. J. 1985. The fossil record. Pp. 1-51 in R. H. TAMARIN, ed. Biology of New World Microtus. Spec. Publ. Am. Soc. Mammal. No. 8.