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Volumn 5724 LNBI, Issue , 2009, Pages 85-96

SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy

Author keywords

[No Author keywords available]

Indexed keywords

BREAKPOINT; BREAKPOINT DISTANCE; GENOME COMPARISON; GENOME REARRANGEMENTS; MEDIAN PROBLEM; MULTICHROMOSOMAL GENOMES; NEW RESULTS; NP-HARD; POLYNOMIAL-TIME ALGORITHMS;

EID: 70350365701     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-04241-6_8     Document Type: Conference Paper
Times cited : (12)

References (27)
  • 1
    • 0000309645 scopus 로고
    • Inversions in the third chromosome of wild races of Drosophila pseudoobscura, and their use in the study of the history of the species
    • Sturtevant, A.H., Dobzhansky, T.: Inversions in the third chromosome of wild races of Drosophila pseudoobscura, and their use in the study of the history of the species. PNAS 22(7), 448-450 (1936)
    • (1936) PNAS , vol.22 , Issue.7 , pp. 448-450
    • Sturtevant, A.H.1    Dobzhansky, T.2
  • 2
    • 72749127435 scopus 로고
    • The origin and behavior of mutable loci in maize
    • McClintock, B.: The origin and behavior of mutable loci in maize. PNAS 36(6), 344-355 (1950)
    • (1950) PNAS , vol.36 , Issue.6 , pp. 344-355
    • McClintock, B.1
  • 3
    • 0000791476 scopus 로고
    • Lengths of chromosomal segments conserved since divergence of man and mouse
    • Nadeau, J.H., Taylor, B.A.: Lengths of chromosomal segments conserved since divergence of man and mouse. PNAS 81(3), 814-818 (1984)
    • (1984) PNAS , vol.81 , Issue.3 , pp. 814-818
    • Nadeau, J.H.1    Taylor, B.A.2
  • 4
    • 0001807019 scopus 로고
    • Transforming cabbage into turnip (polynomial algorithm for sorting signed permutations by reversals)
    • Hannenhalli, S., Pevzner, P.A.: Transforming cabbage into turnip (polynomial algorithm for sorting signed permutations by reversals). In: Proc. 27th Ann. Symp. Theory of Computing STOC 1995 (1995)
    • (1995) Proc. 27th Ann. Symp. Theory of Computing STOC
    • Hannenhalli, S.1    Pevzner, P.A.2
  • 5
    • 0000320128 scopus 로고    scopus 로고
    • Polynomial-time algorithm for computing translocation distance between genomes
    • Hannenhalli, S.: Polynomial-time algorithm for computing translocation distance between genomes. Discrete Appl. Math. 71(1-3), 137-151 (1996)
    • (1996) Discrete Appl. Math , vol.71 , Issue.1-3 , pp. 137-151
    • Hannenhalli, S.1
  • 6
    • 0030285740 scopus 로고    scopus 로고
    • Sorting permutations by block-interchanges
    • Christie, D.A.: Sorting permutations by block-interchanges. Information Processing Letters 60, 165-169 (1996)
    • (1996) Information Processing Letters , vol.60 , pp. 165-169
    • Christie, D.A.1
  • 7
    • 10244270170 scopus 로고    scopus 로고
    • Sorting by transpositions
    • Bafna, V., Pevzner, P.A.: Sorting by transpositions. SIAM J. Discrete Math. 11(2), 224-240 (1998)
    • (1998) SIAM J. Discrete Math , vol.11 , Issue.2 , pp. 224-240
    • Bafna, V.1    Pevzner, P.A.2
  • 9
    • 34548120880 scopus 로고    scopus 로고
    • Sorting by block-interchanges and signed reversals
    • Mira, C., Meidanis, J.: Sorting by block-interchanges and signed reversals. In: Proc. ITNG 2007, pp. 670-676 (2007)
    • (2007) Proc. ITNG 2007 , pp. 670-676
    • Mira, C.1    Meidanis, J.2
  • 10
    • 84963930752 scopus 로고    scopus 로고
    • Genome rearrangements distance by fusion, fission, and transposition is easy
    • Dias, Z., Meidanis, J.: Genome rearrangements distance by fusion, fission, and transposition is easy. In: Proc. SPIRE 2001, pp. 250-253 (2001)
    • (2001) Proc. SPIRE , pp. 250-253
    • Dias, Z.1    Meidanis, J.2
  • 11
    • 33748901317 scopus 로고    scopus 로고
    • Analysis of circular genome rearrangement by fusions, fissions and block-interchanges
    • Lu, C.L., Huang, Y.L., Wang, T.C., Chiu, H.T.: Analysis of circular genome rearrangement by fusions, fissions and block-interchanges. BMC Bioinformatics 7, 295 (2006)
    • (2006) BMC Bioinformatics , vol.7 , pp. 295
    • Lu, C.L.1    Huang, Y.L.2    Wang, T.C.3    Chiu, H.T.4
  • 12
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion and block interchange
    • Yancopoulos, S., Attie, O., Friedberg, R.: Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics 21(16), 3340-3346 (2005)
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3340-3346
    • Yancopoulos, S.1    Attie, O.2    Friedberg, R.3
  • 14
    • 0035229986 scopus 로고    scopus 로고
    • New approaches for reconstructing phylogenies from gene order data
    • Moret, B.M., Wang, L.S., Warnow, T., Wyman, S.K.: New approaches for reconstructing phylogenies from gene order data. Bioinformatics 17(suppl. 1), S165-S173 (2001)
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Moret, B.M.1    Wang, L.S.2    Warnow, T.3    Wyman, S.K.4
  • 15
    • 0036143403 scopus 로고    scopus 로고
    • Genome-scale evolution: Reconstructing gene orders in the ancestral species
    • Bourque, G., Pevzner, P.A.: Genome-scale evolution: reconstructing gene orders in the ancestral species. Genome Res. 12(1), 26-36 (2002)
    • (2002) Genome Res , vol.12 , Issue.1 , pp. 26-36
    • Bourque, G.1    Pevzner, P.A.2
  • 16
    • 42349094694 scopus 로고    scopus 로고
    • The ABCs of MGR with DCJ. Evol. Bioinform
    • Adam, Z., Sankoff, D.: The ABCs of MGR with DCJ. Evol. Bioinform. Online 4, 69-74 (2008)
    • (2008) Online , vol.4 , pp. 69-74
    • Adam, Z.1    Sankoff, D.2
  • 17
    • 56649103607 scopus 로고    scopus 로고
    • Tannier, E., Zheng, C., Sankoff, D.: Multichromosomal genome median and halving problems. In: Crandall, K.A., Lagergren, J. (eds.) WABI 2008. LNCS (LNBI), 5251, pp. 1-13. Springer, Heidelberg (2008)
    • Tannier, E., Zheng, C., Sankoff, D.: Multichromosomal genome median and halving problems. In: Crandall, K.A., Lagergren, J. (eds.) WABI 2008. LNCS (LNBI), vol. 5251, pp. 1-13. Springer, Heidelberg (2008)
  • 18
    • 33750264868 scopus 로고    scopus 로고
    • Bergeron, A., Mixtacki, J., Stoye, J.: A unifying view of genome rearrangements. In: Bücher, P., Moret, B.M.E. (eds.) WABI 2006. LNCS (LNBI), 4175, pp. 163-173. Springer, Heidelberg (2006)
    • Bergeron, A., Mixtacki, J., Stoye, J.: A unifying view of genome rearrangements. In: Bücher, P., Moret, B.M.E. (eds.) WABI 2006. LNCS (LNBI), vol. 4175, pp. 163-173. Springer, Heidelberg (2006)
  • 19
    • 33544458942 scopus 로고    scopus 로고
    • The complexity of the breakpoint median problem
    • Technical Report CRM-2579, Centre de recherches mathematiques, Université de Montréal
    • Bryant, D.: The complexity of the breakpoint median problem. Technical Report CRM-2579, Centre de recherches mathematiques, Université de Montréal (1998)
    • (1998)
    • Bryant, D.1
  • 20
    • 3843132934 scopus 로고    scopus 로고
    • The reversal median problem
    • Caprara, A.: The reversal median problem. INFORMS J. Comput. 15, 93-113 (2003)
    • (2003) INFORMS J. Comput , vol.15 , pp. 93-113
    • Caprara, A.1
  • 23
    • 1942452749 scopus 로고    scopus 로고
    • Proof and evolutionary analysis of ancient genome duplication in the yeast saccharomyces cerevisiae
    • Kellis, M., Birren, B.W., Lander, E.S.: Proof and evolutionary analysis of ancient genome duplication in the yeast saccharomyces cerevisiae. Nature 428 (6983), 617-624 (2004)
    • (2004) Nature , vol.428 , Issue.6983 , pp. 617-624
    • Kellis, M.1    Birren, B.W.2    Lander, E.S.3
  • 25
    • 48249112137 scopus 로고    scopus 로고
    • Genome halving under DCJ revisited
    • Hu, X, Wang, J, eds, COCOON 2008, Springer, Heidelberg
    • Mixtacki, J.: Genome halving under DCJ revisited. In: Hu, X., Wang, J. (eds.) COCOON 2008. LNCS, vol. 5092, pp. 276-286. Springer, Heidelberg (2008)
    • (2008) LNCS , vol.5092 , pp. 276-286
    • Mixtacki, J.1
  • 26
    • 60849107596 scopus 로고    scopus 로고
    • Genome aliquoting with double cut and join
    • S
    • Warren, R., Sankoff, D.: Genome aliquoting with double cut and join. BMC Bioin-formatics 10(suppl. 1), S2 (2009)
    • (2009) BMC Bioin-formatics , vol.10 , Issue.SUPPL. 1 , pp. 2
    • Warren, R.1    Sankoff, D.2
  • 27
    • 46249099578 scopus 로고    scopus 로고
    • Guided genome halving: Hardness, heuristics and the history of the hemiascomycetes
    • Zheng, C., Zhu, Q., Adam, Z., Sankoff, D.: Guided genome halving: hardness, heuristics and the history of the hemiascomycetes. Bioinformatics 24(13), i96-i104 (2008)
    • (2008) Bioinformatics , vol.24 , Issue.13
    • Zheng, C.1    Zhu, Q.2    Adam, Z.3    Sankoff, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.