메뉴 건너뛰기




Volumn 15, Issue 12, 2009, Pages 1501-1507

Molecular dynamics simulations and MM - PBSA calculations of the lectin from snowdrop (Galanthus nivalis)

Author keywords

AMBER; Galanthus nivalis agglutinin (GNA); Lectin; Molecular dynamics simulations (MD); Molecular mechanics Poisson Boltzmann surface area (MM PBSA)

Indexed keywords

AGGLUTININ; LECTIN;

EID: 70350362525     PISSN: 16102940     EISSN: 09485023     Source Type: Journal    
DOI: 10.1007/s00894-009-0502-5     Document Type: Article
Times cited : (6)

References (25)
  • 1
    • 0032422738 scopus 로고    scopus 로고
    • Plant lectins: A composite of several distinct families of structurally and evolutionary related proteins with diverse biological roles
    • Van Damme EJM, Peumans WJ, Barre A, Rouge P (1998) Plant lectins: A composite of several distinct families of structurally and evolutionary related proteins with diverse biological roles. Crit Rev Plant Sci 17:575-692
    • (1998) Crit Rev Plant Sci , vol.17 , pp. 575-692
    • Van Damme, E.J.M.1    Peumans, W.J.2    Barre, A.3    Rouge, P.4
  • 4
    • 0024286486 scopus 로고
    • Binding properties of a mannose-specific lectin from the snowdrop (Galanthus nivalis) bulb
    • Shibuya N, Goldstein IJ, van Damme EJ, Peumans WJ (1988) Binding properties of a mannose-specific lectin from the snowdrop (Galanthus nivalis) bulb. J Biol Chem 263:728-734
    • (1988) J Biol Chem , vol.263 , pp. 728-734
    • Shibuya, N.1    Goldstein, I.J.2    van Damme, E.J.3    Peumans, W.J.4
  • 5
    • 0029658497 scopus 로고    scopus 로고
    • The 2.0 A structure of a cross-linked complex between snowdrop lectin and a branched mannopentaose: Evidence for two unique binding modes
    • Wright CS, Hester G (1996) The 2.0 A structure of a cross-linked complex between snowdrop lectin and a branched mannopentaose: Evidence for two unique binding modes. Structure 4:1339-1352
    • (1996) Structure , vol.4 , pp. 1339-1352
    • Wright, C.S.1    Hester, G.2
  • 6
    • 0029008975 scopus 로고
    • Structure of mannose-specific snowdrop (Galanthus nivalis) lectin is representative of a new plant lectin family
    • Hester G, Kaku H, Goldstein IJ, Wright CS (1995) Structure of mannose-specific snowdrop (Galanthus nivalis) lectin is representative of a new plant lectin family. Nat Struct Biol 2:472-479
    • (1995) Nat Struct Biol , vol.2 , pp. 472-479
    • Hester, G.1    Kaku, H.2    Goldstein, I.J.3    Wright, C.S.4
  • 7
    • 0030568976 scopus 로고    scopus 로고
    • The mannose-specific bulb lectin from Galanthus nivalis (snowdrop) binds mono- and dimannosides at distinct sites. Structure analysis of refined complexes at 2.3 Å and 3.0 Å resolution
    • Hester G, Wright CS (1996) The mannose-specific bulb lectin from Galanthus nivalis (snowdrop) binds mono- and dimannosides at distinct sites. Structure analysis of refined complexes at 2.3 Å and 3.0 Å resolution. J Mol Biol 262:516-531
    • (1996) J Mol Biol , vol.262 , pp. 516-531
    • Hester, G.1    Wright, C.S.2
  • 8
    • 0028095106 scopus 로고
    • Lectins in AIDS research
    • Favero J (1994) Lectins in AIDS research. Glycobiology 4:387-396
    • (1994) Glycobiology , vol.4 , pp. 387-396
    • Favero, J.1
  • 9
    • 5444248711 scopus 로고    scopus 로고
    • Mannose binding lectin (MBL) and HIV
    • Ji X, Gewurz H, Spear GT (2005) Mannose binding lectin (MBL) and HIV. Mol Immunol 42:145-152
    • (2005) Mol Immunol , vol.42 , pp. 145-152
    • Ji, X.1    Gewurz, H.2    Spear, G.T.3
  • 10
    • 0026020005 scopus 로고
    • Alpha-(1-3)- and alpha-(1-6)-D-mannose-specific plant lectins are markedly inhibitory to human immunodeficiency virus and cytomegalovirus infections in vitro
    • Balzarini J, Schols D, Neyts J, van Damme EJ, Peumans W, de Clercq E (1991) Alpha-(1-3)- and alpha-(1-6)-D-mannose-specific plant lectins are markedly inhibitory to human immunodeficiency virus and cytomegalovirus infections in vitro. Antimicrob Agents Chemother 35:410-416
    • (1991) Antimicrob Agents Chemother , vol.35 , pp. 410-416
    • Balzarini, J.1    Schols, D.2    Neyts, J.3    van Damme, E.J.4    Peumans, W.5    de Clercq, E.6
  • 11
    • 0025292252 scopus 로고
    • Assignment of intrachain disulfide bonds and characterization of potential glycosylation sites of the type 1 recombinant human immunodeficiency virus envelope glycoprotein (gp120) expressed in Chinese hamster ovary cells
    • Leonard CK, Spellman MW, Riddle L, Harris RJ, Thomas JN, Gregory TJ (1990) Assignment of intrachain disulfide bonds and characterization of potential glycosylation sites of the type 1 recombinant human immunodeficiency virus envelope glycoprotein (gp120) expressed in Chinese hamster ovary cells. J Biol Chem 265:10373-10382
    • (1990) J Biol Chem , vol.265 , pp. 10373-10382
    • Leonard, C.K.1    Spellman, M.W.2    Riddle, L.3    Harris, R.J.4    Thomas, J.N.5    Gregory, T.J.6
  • 13
    • 55949108077 scopus 로고    scopus 로고
    • Molecular mechanism for the effects of trehalose on beta-hairpin folding revealed by molecular dynamics simulation
    • Liu FF, Dong XY, Sun Y (2008) Molecular mechanism for the effects of trehalose on beta-hairpin folding revealed by molecular dynamics simulation. J Mol Graph Model 27:421-429
    • (2008) J Mol Graph Model , vol.27 , pp. 421-429
    • Liu, F.F.1    Dong, X.Y.2    Sun, Y.3
  • 14
    • 49649099523 scopus 로고    scopus 로고
    • Temperature-induced unfolding pathway of a type III antifreeze protein: Insight from molecular dynamics simulation
    • Kundu S, Roy D (2008) Temperature-induced unfolding pathway of a type III antifreeze protein: Insight from molecular dynamics simulation. J Mol Graph Model 27:88-94
    • (2008) J Mol Graph Model , vol.27 , pp. 88-94
    • Kundu, S.1    Roy, D.2
  • 15
    • 0004016501 scopus 로고
    • Comparison of simple potential functions for simulating liquid water
    • Jorgensen WL, C C, Madura JD (1983) Comparison of simple potential functions for simulating liquid water. J Chem Phys 79:926-935
    • (1983) J Chem Phys , vol.79 , pp. 926-935
    • Jorgensen, W.L.C.C.1    Madura, J.D.2
  • 17
    • 0001398008 scopus 로고    scopus 로고
    • How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
    • Wang JM, Cieplak P, Kollman PA (2000) How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J Comput Chem 21:1049-1074
    • (2000) J Comput Chem , vol.21 , pp. 1049-1074
    • Wang, J.M.1    Cieplak, P.2    Kollman, P.A.3
  • 18
    • 0035845496 scopus 로고    scopus 로고
    • Solvent interactions determine carbohydrate conformation
    • Kirschner KN, Woods RJ (2001) Solvent interactions determine carbohydrate conformation. Proc Natl Acad Sci USA 98:10541-10545
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 10541-10545
    • Kirschner, K.N.1    Woods, R.J.2
  • 19
    • 70350356711 scopus 로고    scopus 로고
    • AMBER online manual. http://ambermd.org/tutorials/advanced/tutorial8/ loop2.htm
    • AMBER Online Manual
  • 20
    • 33947317580 scopus 로고    scopus 로고
    • Langevin stabilization of molecular-dynamics simulations of polymers by means of quasisymplectic algorithms
    • Larini L, Mannella R, Leporini D (2007) Langevin stabilization of molecular-dynamics simulations of polymers by means of quasisymplectic algorithms. J Chem Phys 126:104101
    • (2007) J Chem Phys , vol.126 , pp. 104101
    • Larini, L.1    Mannella, R.2    Leporini, D.3
  • 22
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • Guex N, Peitsch MC (1997) SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis 18:2714-2723
    • (1997) Electrophoresis , vol.18 , pp. 714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 24
    • 0036771626 scopus 로고    scopus 로고
    • Accelerated Poisson-Boltzmann calculations for static and dynamic systems
    • Luo R, David L, Gilson MK (2002) Accelerated Poisson-Boltzmann calculations for static and dynamic systems. J Comput Chem 23:1244-1253
    • (2002) J Comput Chem , vol.23 , pp. 1244-1253
    • Luo, R.1    David, L.2    Gilson, M.K.3
  • 25
    • 36749053507 scopus 로고    scopus 로고
    • Computational alanine scanning and free energy decomposition for E. coli type I signal peptidase with lipopeptide inhibitor complex
    • Li T, Froeyen M, Herdewijn P (2008) Computational alanine scanning and free energy decomposition for E. coli type I signal peptidase with lipopeptide inhibitor complex. J Mol Graph Model 26:813-823
    • (2008) J Mol Graph Model , vol.26 , pp. 813-823
    • Li, T.1    Froeyen, M.2    Herdewijn, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.