Simulations of the BM2 proton channel transmembrane domain from influenza virus B

Biochemistry

Volumn 48, Issue 42, 2009, Pages 9949-9951

  Rouse, Sarah L ^a   Carpenter, Timothy ^b   Stansfeld, Phillip J ^a   Sansom, Mark S P ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMISTIC MOLECULAR DYNAMICS SIMULATIONS; ATOMISTIC RESOLUTION; CHANNEL MODEL; COARSE-GRAINED; CONFORMATIONAL CHANGE; HELIX PACKING; IN-CHANNELS; INFLUENZA VIRUS; INTEGRAL MEMBRANE PROTEINS; MOLECULAR DYNAMICS SIMULATIONS; PROTON CHANNELS; PROTONATED; PROTONATING; SIDE CHAINS; TIME-SCALES; TRANS-MEMBRANE DOMAINS; TRANSMEMBRANE HELICES; WATER INTERACTIONS;

ACTIVATION ANALYSIS; CELL MEMBRANES; LIPID BILAYERS; MOLECULAR DYNAMICS; PROTONS;

SIMULATORS;

BM2 PROTEIN; MEMBRANE PROTEIN; PROTON; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ARTICLE; CHANNEL GATING; CONFORMATIONAL TRANSITION; INFLUENZA VIRUS B; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; PROTON TRANSPORT; SIMULATION;

COMPUTER SIMULATION; INFLUENZA B VIRUS; MEMBRANE PROTEINS; MODELS, MOLECULAR; PROTEIN STRUCTURE, TERTIARY; VIRAL PROTEINS;

INFLUENZA B VIRUS; INFLUENZAVIRUS B;

EID: 70350244703     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi901166n     Document Type: Article

References (12)

1. Pinto, L. H., and Lamb, R. A. (2006) J. Biol. Chem. 281, 8997-9000.
2. Paterson, R. G., Takeda, M., Ohigashi, Y., Pinto, L. H., and Lamb, R. A. (2003) Virology 306, 7-17.
3. Schnell, J. R., and Chou, J. J. (2008) Nature 451, 591-595.
4. Stouffer, A. L., Acharya, R., Salom, D., Levine, A. S., Di Costanzo, L., Soto, C. S., Tereshko, V., Nanda, V., Stayrook, S., and DeGrado, W. F. (2008) Nature 451, 596-599.
5. Balannik, V., Lamb, R. A., and Pinto, L. H. (2008) J. Biol. Chem. 283, 4895-4904.
6. Ma, C. L., Soto, C. S., Ohigashi, Y., Taylor, A., Bournas, V., Glawe, B., Udo, M. K., DeGrado, W. F., Lamb, R. A., and Pinto, L. H. (2008) J. Biol. Chem. 283, 15921-15931.
7. Otomo, K., Toyama, A., Miura, T., and Takeuchi, H. (2009) J. Biochem. 145, 543-554.
8. Carpenter, T., Bond, P. J., Khalid, S., and Sansom, M. S. P. (2008) Biophys. J. 95, 3790-3801.
9. Hu, J., Fu, R., Nishimura, K., Zhang, L., Zhou, H. X., Busath, D. D., Vijayvergiya, V., and Cross, T. A. (2006) Proc. Natl. Acad. Sci. U.S. A. 103, 6865-6870.
10. Kass, I., and Arkin, I. T. (2005) Structure 13, 1789-1798.
11. Chen, H. N., Wu, Y. J., and Voth, G. A. (2007) Biophys. J. 93, 3470-3479.
12. Khurana, E., Dal Peraro, M., DeVane, R., Vemparala, S., DeGrado, W. F., and Klein, M. L. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 1069-1074.