Patterns of molecular evolution of microsatellite loci in pepper (Capsicum spp.) revealed by allele sequencing

Plant Systematics and Evolution

Volumn 281, Issue 1-2, 2009, Pages 251-254

  Stágel, Anikó ^a,b,c   Gyurján, István ^c   Sasvári, Zsuzsanna ^b   Lanteri, Sergio ^a   Ganal, Martin ^d   Nagy, István ^b  

^a UNIVERSITY OF TURIN   (Italy)

^b SZENT ISTVÁN UNIVERSITY   (Hungary)

^c EÖTVÖS LORÁND UNIVERSITY   (Hungary)

^d TRAITGENETICS GMBH   (Germany)

Author keywords

Capsicum spp.; Evolution; Homoplasy; Microsatellites; Polymorphism

Indexed keywords

CAPSICUM;

EID: 70350214275     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-009-0196-2     Document Type: Article

References (21)

1. Ablett G, Hill H, Henry RJ (2006) Sequence polymorphism discovery in wheat microsatellite flanking regions using pyrophosphate sequencing. Mol Breed 17:281-289.
2. Bachtrog D, Weiss S, Zangerl B, Brem G, Schlötterer C (1999) Distribution of dinucleotide microsatellites in the Drosophila melanogaster genome. Mol Biol Evol 16:602-610.
3. Bacon AL, Farrington SM, Dunlop MG (2000) Sequence interruptions confer differential stability at microsatellite alleles in mismatch repair-deficient cells. Hum Mol Genet 9:2707-2713.
4. Colson I, Goldstein DB (1999) Evidence for complex mutations at microsatellite loci in Drosophila. Genetics 152:617-627.
5. Craig RP, Ellegren H (1998) Patterns of molecular evolution in avian microsatellites. Mol Biol Evol 15:997-1008.
6. Di Rienzo A, Peterson AC, Garza JC, Valdes AM, Slatkin M, Freimer NB (1994) Mutational processes of simple-sequence repeat loci in human populations. Proc Natl Acad Sci USA 91:3166-3170.
7. Estoup A, Tailliez C, Cornuet JM, Solignac M (1995) Size homoplasy and mutational processes of interrupted microsatellites in two bee species Apis mellifera and Bombus terrestris (Apidae). Mol Biol Evol 12:1074-1084.
8. Estoup A, Jarne P, Cornuet J-M (2002) Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis. Mol Ecol 11:1591-1604.
9. Grimaldi MC, Crouau-Roy B (1997) Microsatellite allelic homoplasy due to variable flanking sequences. J Mol Evol 44:336-340.
10. Huang Q-Y, Xu F-H, Shen H, Deng H-Y, Liu Y-J, Liu Y-Z, Li J-L, Recker RR, Deng H-W (2002) Mutation patterns at dinucleotide microsatellite loci in humans. Am J Hum Genet 70:625-634.
11. Kimura M, Ohta T (1978) Stepwise mutation model and distribution of allelic frequencies in a finite population. Proc Natl Acad Sci USA 75:2868-2872.
12. Mogg R, Batley J, Hanley S, Edwards D, O'Sullivan H, Edwards KJ (2002) Characterization of the flanking regions of Zea mays microsatellites reveals a large number of useful sequence polymorphisms. Theor Appl Genet 105:532-543.
13. Nagy I, Stágel A, Sasvári Z, Röder M, Ganal M (2007) Development, characterization and transferability to other Solanaceae of microsatellite markers in pepper (Capsicum annuum L.). Genome 50:668-688.
14. Petes TD, Greenwell PW, Dominska M (1997) Stabilization of microsatellite sequences by variant repeats in the yeast Saccharomyces cerevisiae. Genetics 146:491-498.
15. Powell W, Machray G, Provan J (1996) Polymorphism revealed by simple sequence repeats. Trends Plant Sci 1:215-222.
16. Primmer CR, Ellegren H, Saino N, Møller AP (1996) Directional evolution in germline microsatellite mutations. Nat Genet 13:391-393.
17. Richards RI, Sutherland GR (1994) Simple repeat DNA is not replicated simply. Nat Genet 6:114-116.
18. Schlötterer C, Tautz D (1992) Slippage synthesis of simple sequence DNA. Nucleic Acids Res 20:211-215.
19. Tautz D, Trick M, Dover GA (1986) Cryptic simplicity in DNA is a major source of genetic variation. Nature 322:652-656.
20. Valdes AM, Slatkin M, Freimer NB (1993) Allele frequencies at microsatellite loci: the stepwise mutation model revisited. Genetics 133:737-749.
21. Weber JL, Wong C (1993) Mutation of human short tandem repeats. Hum Mol Genet 2:1123-1128.