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Volumn 145, Issue 2-3, 2009, Pages 105-110

The stability of triplex DNA is affected by the stability of the underlying duplex

Author keywords

Nucleotide analogue; Thermal melting; Triplex

Indexed keywords

CYSTEINE; DOUBLE STRANDED DNA; GLYCINE; OLIGONUCLEOTIDE;

EID: 70350198009     PISSN: 03014622     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bpc.2009.09.007     Document Type: Article
Times cited : (14)

References (37)
  • 1
    • 0034084567 scopus 로고    scopus 로고
    • Targeting DNA with triplexes
    • Fox K.R. Targeting DNA with triplexes. Curr. Med. Chem. 7 (2000) 17-37
    • (2000) Curr. Med. Chem. , vol.7 , pp. 17-37
    • Fox, K.R.1
  • 2
    • 33745299348 scopus 로고    scopus 로고
    • Targeted genome modification via triple helix formation
    • Kalish J.M., and Glazer P.M. Targeted genome modification via triple helix formation. Ann. N. Y. Acad. Sci. 1058 (2005) 151-161
    • (2005) Ann. N. Y. Acad. Sci. , vol.1058 , pp. 151-161
    • Kalish, J.M.1    Glazer, P.M.2
  • 3
    • 0038498430 scopus 로고    scopus 로고
    • Applications of triple-stranded nucleic acid structures to DNA purification, detection and analysis
    • Potaman V.N. Applications of triple-stranded nucleic acid structures to DNA purification, detection and analysis. Expert. Rev. Mol. Diagn. 3 (2003) 481-496
    • (2003) Expert. Rev. Mol. Diagn. , vol.3 , pp. 481-496
    • Potaman, V.N.1
  • 4
    • 41749092321 scopus 로고    scopus 로고
    • Towards the targeted modulation of gene expression by modified triplex-forming oligonucleotides
    • Rusling D.A., Broughton-Head V.J., Brown T., and Fox K.R. Towards the targeted modulation of gene expression by modified triplex-forming oligonucleotides. Curr. Chem. Biol. 2 (2008) 1-10
    • (2008) Curr. Chem. Biol. , vol.2 , pp. 1-10
    • Rusling, D.A.1    Broughton-Head, V.J.2    Brown, T.3    Fox, K.R.4
  • 5
    • 33748577758 scopus 로고
    • Sequence-specific recognition and modification of double-helical DNA by oligonucleotides
    • Thuong N.T., and Hélène C. Sequence-specific recognition and modification of double-helical DNA by oligonucleotides. Angew. Chem. Intl. Ed. Engl. 32 (1993) 666-690
    • (1993) Angew. Chem. Intl. Ed. Engl. , vol.32 , pp. 666-690
    • Thuong, N.T.1    Hélène, C.2
  • 7
    • 0023619361 scopus 로고
    • Sequence-specific cleavage of double helical DNA by triple helix formation
    • Moser H.E., and Dervan P.B. Sequence-specific cleavage of double helical DNA by triple helix formation. Science 238 (1987) 645-650
    • (1987) Science , vol.238 , pp. 645-650
    • Moser, H.E.1    Dervan, P.B.2
  • 9
    • 0033486098 scopus 로고    scopus 로고
    • A search for base analogs to enhance third-strand binding to 'inverted' target base pairs of triplexes in the pyrimidine/parallel motif
    • Amosova O.A., and Fresco J.R. A search for base analogs to enhance third-strand binding to 'inverted' target base pairs of triplexes in the pyrimidine/parallel motif. Nucleic Acids Res. 27 (1999) 4632-4635
    • (1999) Nucleic Acids Res. , vol.27 , pp. 4632-4635
    • Amosova, O.A.1    Fresco, J.R.2
  • 10
    • 0344033606 scopus 로고    scopus 로고
    • Recent improvements in antigene technology
    • Buchini S., and Leumann C.J. Recent improvements in antigene technology. Curr. Opin. Chem. Biol. 7 (2003) 717-726
    • (2003) Curr. Opin. Chem. Biol. , vol.7 , pp. 717-726
    • Buchini, S.1    Leumann, C.J.2
  • 13
    • 0032789275 scopus 로고    scopus 로고
    • Modified oligonucleotides with triple-helix stabilization properties
    • Eritja R., Ferrer E., García R.G., and Orozco M. Modified oligonucleotides with triple-helix stabilization properties. Nucleosides Nucleotides 18 (1999) 1619-1621
    • (1999) Nucleosides Nucleotides , vol.18 , pp. 1619-1621
    • Eritja, R.1    Ferrer, E.2    García, R.G.3    Orozco, M.4
  • 14
    • 33748523870 scopus 로고    scopus 로고
    • An extra dimension in nucleic acid sequence recognition
    • Fox K.R., and Brown T. An extra dimension in nucleic acid sequence recognition. Q. Rev. Biophys. 38 (2005) 311-320
    • (2005) Q. Rev. Biophys. , vol.38 , pp. 311-320
    • Fox, K.R.1    Brown, T.2
  • 15
    • 0033118865 scopus 로고    scopus 로고
    • Towards mixed sequence recognition by triple helix formation
    • Gowers D.M., and Fox K.R. Towards mixed sequence recognition by triple helix formation. Nucleic Acids Res. 27 (1999) 1569-1577
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1569-1577
    • Gowers, D.M.1    Fox, K.R.2
  • 17
    • 0034282708 scopus 로고    scopus 로고
    • Chemical modification of pyrimidine TFOs: effect on i-motif and triple helix formation
    • Lacroix L., and Mergny J.L. Chemical modification of pyrimidine TFOs: effect on i-motif and triple helix formation. Arch. Biochem. Biophys. 381 (2000) 153-163
    • (2000) Arch. Biochem. Biophys. , vol.381 , pp. 153-163
    • Lacroix, L.1    Mergny, J.L.2
  • 18
    • 0036119471 scopus 로고    scopus 로고
    • Evaluation of novel third-strand bases for the recognition of a CG base pair in the parallel DNA triple-helical binding motif
    • Prévot I., and Leumann C.J. Evaluation of novel third-strand bases for the recognition of a CG base pair in the parallel DNA triple-helical binding motif. Helv. Chim. Acta 85 (2002) 502-515
    • (2002) Helv. Chim. Acta , vol.85 , pp. 502-515
    • Prévot, I.1    Leumann, C.J.2
  • 21
    • 36949008769 scopus 로고    scopus 로고
    • CG base pair recognition within DNA triple helices using N-methyl-3H-pyrrolo[2, 3-d]pyrimidin-2(7H)-one nucleoside analogues
    • Gerrard S.R., Srinivasan N., Fox K.R., and Brown T. CG base pair recognition within DNA triple helices using N-methyl-3H-pyrrolo[2, 3-d]pyrimidin-2(7H)-one nucleoside analogues. Nucl. Nucl. Nucleic Acids 26 (2007) 1363-1367
    • (2007) Nucl. Nucl. Nucleic Acids , vol.26 , pp. 1363-1367
    • Gerrard, S.R.1    Srinivasan, N.2    Fox, K.R.3    Brown, T.4
  • 22
    • 33845222303 scopus 로고    scopus 로고
    • Triplex staples: DNA double-strand cross-linking at internal and terminal sites using psoralen-containing triplex-forming oligonucleotides
    • Li H., Broughton-Head V.J., Peng G.M., Powers V.E.C., Ovens M.J., Fox K.R., and Brown T. Triplex staples: DNA double-strand cross-linking at internal and terminal sites using psoralen-containing triplex-forming oligonucleotides. Bioconjug. Chem. 17 (2006) 1561-1567
    • (2006) Bioconjug. Chem. , vol.17 , pp. 1561-1567
    • Li, H.1    Broughton-Head, V.J.2    Peng, G.M.3    Powers, V.E.C.4    Ovens, M.J.5    Fox, K.R.6    Brown, T.7
  • 24
    • 4544250514 scopus 로고    scopus 로고
    • Exploring Hoogsteen and reversed-Hoogsteen duplex and triplex formation with tricyclo-DNA purine sequences
    • Renneberg D., and Leumann C.J. Exploring Hoogsteen and reversed-Hoogsteen duplex and triplex formation with tricyclo-DNA purine sequences. Chembiochem 5 (2004) 1114-1118
    • (2004) Chembiochem , vol.5 , pp. 1114-1118
    • Renneberg, D.1    Leumann, C.J.2
  • 25
    • 0037108094 scopus 로고    scopus 로고
    • Stability and kinetics of nucleic acid triplexes with chimaeric DNA/RNA third strands
    • Bernal-Mendez E., and Leumann C.J. Stability and kinetics of nucleic acid triplexes with chimaeric DNA/RNA third strands. Biochemistry 41 (2002) 12343-12349
    • (2002) Biochemistry , vol.41 , pp. 12343-12349
    • Bernal-Mendez, E.1    Leumann, C.J.2
  • 26
    • 0033560690 scopus 로고    scopus 로고
    • 5-(1-propargylamino)-2′-deoxyuridine (U-P): a novel thymidine analogue for generating DNA triplexes with increased stability
    • Bijapur J., Keppler M.D., Bergqvist S., Brown T., and Fox K.R. 5-(1-propargylamino)-2′-deoxyuridine (U-P): a novel thymidine analogue for generating DNA triplexes with increased stability. Nucleic Acids Res. 27 (1999) 1802-1809
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1802-1809
    • Bijapur, J.1    Keppler, M.D.2    Bergqvist, S.3    Brown, T.4    Fox, K.R.5
  • 27
    • 0037062574 scopus 로고    scopus 로고
    • Stable DNA triple helix formation using oligonucleotides containing 2′-aminoethoxy, 5-propargylamino-U
    • Sollogoub M., Darby R.A.J., Cuenoud B., Brown T., and Fox K.R. Stable DNA triple helix formation using oligonucleotides containing 2′-aminoethoxy, 5-propargylamino-U. Biochemistry 41 (2002) 7224-7231
    • (2002) Biochemistry , vol.41 , pp. 7224-7231
    • Sollogoub, M.1    Darby, R.A.J.2    Cuenoud, B.3    Brown, T.4    Fox, K.R.5
  • 28
    • 27944437390 scopus 로고    scopus 로고
    • Combining nucleoside analogues to achieve recognition of oligopurine tracts by triplex-forming oligonucleotides at physiological pH
    • Rusling D.A., Le Strat L., Powers V.E.C., Broughton-Head V.J., Booth J., Lack O., Brown T., and Fox K.R. Combining nucleoside analogues to achieve recognition of oligopurine tracts by triplex-forming oligonucleotides at physiological pH. FEBS Lett. 579 (2005) 6616-6620
    • (2005) FEBS Lett. , vol.579 , pp. 6616-6620
    • Rusling, D.A.1    Le Strat, L.2    Powers, V.E.C.3    Broughton-Head, V.J.4    Booth, J.5    Lack, O.6    Brown, T.7    Fox, K.R.8
  • 29
    • 33747767611 scopus 로고    scopus 로고
    • DNA triple-helix formation at target sites containing duplex mismatches
    • Rusling D.A., Brown T., and Fox K.R. DNA triple-helix formation at target sites containing duplex mismatches. Biophys. Chem. 123 (2006) 134-140
    • (2006) Biophys. Chem. , vol.123 , pp. 134-140
    • Rusling, D.A.1    Brown, T.2    Fox, K.R.3
  • 30
    • 37148999065 scopus 로고    scopus 로고
    • Kinetic studies on the formation of DNA triplexes containing the nucleoside analogue 2′-O-(2-aminoethyl)-5-(3-amino-1-propynyl)uridine
    • Rusling D.A., Broughton-Head V.J., Tuck A., Khairallah H., Osborne S.D., Brown T., and Fox K.R. Kinetic studies on the formation of DNA triplexes containing the nucleoside analogue 2′-O-(2-aminoethyl)-5-(3-amino-1-propynyl)uridine. Org. Biomol. Chem. 6 (2008) 122-129
    • (2008) Org. Biomol. Chem. , vol.6 , pp. 122-129
    • Rusling, D.A.1    Broughton-Head, V.J.2    Tuck, A.3    Khairallah, H.4    Osborne, S.D.5    Brown, T.6    Fox, K.R.7
  • 31
    • 4544284320 scopus 로고    scopus 로고
    • Stable and selective recognition of three base pairs in the parallel triple-helical DNA binding motif
    • Buchini S., and Leumann C.J. Stable and selective recognition of three base pairs in the parallel triple-helical DNA binding motif. Angew. Chem. Int. Ed. Engl. 43 (2004) 3925-3928
    • (2004) Angew. Chem. Int. Ed. Engl. , vol.43 , pp. 3925-3928
    • Buchini, S.1    Leumann, C.J.2
  • 32
    • 33746053803 scopus 로고    scopus 로고
    • 2′-O-aminoethyl oligoribonucleotides containing novel base analogues: synthesis and triple-helix formation at pyrimidine/purine inversion sites
    • Buchini S., and Leumann C.J. 2′-O-aminoethyl oligoribonucleotides containing novel base analogues: synthesis and triple-helix formation at pyrimidine/purine inversion sites. Eur. J. Org. Chem. (2006) 3152-3168
    • (2006) Eur. J. Org. Chem. , pp. 3152-3168
    • Buchini, S.1    Leumann, C.J.2
  • 34
    • 34548055945 scopus 로고    scopus 로고
    • Pyrrolidino DNA with bases corresponding to the 2-oxo deletion mutants of thymine and cytosine: synthesis and triplex-forming properties
    • Mayer A., and Leumann C.J. Pyrrolidino DNA with bases corresponding to the 2-oxo deletion mutants of thymine and cytosine: synthesis and triplex-forming properties. Eur. J. Org. Chem. (2007) 4038-4049
    • (2007) Eur. J. Org. Chem. , pp. 4038-4049
    • Mayer, A.1    Leumann, C.J.2
  • 35
    • 4243150790 scopus 로고    scopus 로고
    • Selectivity and affinity of triplex-forming oligonucleotides containing 2′-aminoethoxy-5-(3-aminoprop-1-ynyl)uridine for recognizing AT base pairs in duplex DNA
    • Osborne S.D., Powers V.E.C., Rusling D.A., Lack O., Fox K.R., and Brown T. Selectivity and affinity of triplex-forming oligonucleotides containing 2′-aminoethoxy-5-(3-aminoprop-1-ynyl)uridine for recognizing AT base pairs in duplex DNA. Nucleic Acids Res. 32 (2004) 4439-4447
    • (2004) Nucleic Acids Res. , vol.32 , pp. 4439-4447
    • Osborne, S.D.1    Powers, V.E.C.2    Rusling, D.A.3    Lack, O.4    Fox, K.R.5    Brown, T.6
  • 37
    • 0025166762 scopus 로고
    • Kinetic-analysis of oligodeoxyribonucleotide-directed triple-helix formation on DNA
    • Maher L.J., Dervan P.B., and Wold B.J. Kinetic-analysis of oligodeoxyribonucleotide-directed triple-helix formation on DNA. Biochemistry 29 (1990) 8820-8826
    • (1990) Biochemistry , vol.29 , pp. 8820-8826
    • Maher, L.J.1    Dervan, P.B.2    Wold, B.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.