Comparison of the solution structures of intramolecular DNA triple helices containing adjacent and non-adjacent CG·C+ triplets

Nucleic Acids Research

Volumn 26, Issue 16, 1998, Pages 3677-3686

  Asensio, Juan Luis ^a,c   Brown, Tom ^b   Lane, Andrew N ^a  

^a NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (United Kingdom)

^b UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

^c INSTITUTO DE QUÍMICA ORGÁNICA GENERAL   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DNA; GUANINE; PURINE;

ARTICLE; CONTROLLED STUDY; DNA CONFORMATION; DNA STRUCTURE; GENETIC STABILITY; HYDROGEN BOND; PH; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; THERMODYNAMICS; TRIPLE HELIX;

BASE SEQUENCE; CYTOSINE; DNA; DRUG STABILITY; HYDROGEN-ION CONCENTRATION; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, CHEMICAL; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; POLYDEOXYRIBONUCLEOTIDES; PROTONS; SOLUTIONS; THERMODYNAMICS;

EID: 0032529481     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/26.16.3677     Document Type: Article

References (35)

1. Sun,J.-S. and Hélène,C. (1993) Curr. Opin. Struct. Biol., 3, 345-356.
2. Plum,G.E. and Breslauer,K.J. (1995) J. Mol. Biol., 248, 679-695.
3. Asensio,J.L., Dhesai,J., Bergqvist,S., Brown,T. and Lane,A.N. (1998) J. Mol. Biol., 275, 811-822.
4. Durand,M., Peloille,S., Thuong,N.T. and Maurizot,J.C (1992) Biochemistry, 31, 9197-9204.
5. Pilch,D.S., Levenson,C. and Shafer,R.H. (1990) Proc. Natl. Acad. Sci. USA, 87, 1942-1946.
6. Roberts,R.W. and Crothers,D.M. (1996) Proc. Natl. Acad. Sci. USA, 93, 4320-325.
7. Kiessling,L.L., Griffin,L.C. and Dervan,P.B. (1992) Biochemistry, 31, 2829-2834.
8. Bartley,J.P., Brown,T. and Lane,A.N. (1997) Biochemistry, 36, 14502-14511.
9. Piotto,M., Saudek,V. and Sklenar,V. (1992) J. Biomol. Struct., 2, 661-665.
10. States,D.J., Haberkorn,R.A. and Ruben,D.J. (1982) J. Magn. Resonance, 48, 286-292.
11. Bodenhausen,G. and Ruben,D.J. (1980) Chem. Phys. Lett., 69, 185-189.
12. Conte,M.R., Bauer,C.J. and Lane,A.N. (1996) J. Biomol. NMR, 7, 190-206.
13. Kim,S.-G. and Reid,B.R. (1992) Biochemistry, 31, 12103-12116.
14. Wijmenga,S.S., Mooren,M.N.W. and Hilbers,C.W. (1993) In Roberts,G.C.K. (ed.), NMR of Macromolecules: A Practical Approach. IRL Press, Oxford, UK, Ch. 8.
15. Borgias,B.A., Gochin,M., Kerwood,D.J. and James,T.L. (1990) Prog. NMR Spectrosc., 22, 83-100.
16. Schmitz,U. and James,T.L. (1995) Methods Enzymol., 261, 3-44.
17. Liu,H., Borgias,B., Kumar,A. and James,T.L. (1992) CORMA - Complete Relaxation Matrix Anaysis, Version 3.1. University of California, San Francisco, CA.
18. Lavery,R. and Sklenar,H. (1996) Curves 5.1 Manual. CNRS, Paris, France.
19. Feigon,J., Koshlap,K.M. and Smith,F.W. (1995) Methods Enzymol., 261, 225-255.
20. Guéron,M. and Leroy,J.-L. (1995) Methods Enzymol., 261, 383-412.
21. Colominas,C., Luque,F.J. and Orozco,M. (1996) J. Am. Chem. Soc., 118, 6811-6821.
22. Fasman,G.D. (ed.) (1976) Handbook of Biochemistry and Molecular Biology. CRC Press, Cleveland, OH, Vol. I, p. 206.
23. Varani,G. and Tinoco,I.,Jr (1991) J. Am. Chem. Soc., 113, 9349-9354.
24. Ippel,J.H., Wijmenga,S.S., de Jong,R., Heus,H.A., Hilbers,C.W., de Vroom,E., van der Marel,G.A. and van Boom,J.H (1996) Magn. Resonance Chem., 34, S156-S176.
25. Macaya,R.F., Schultze,P. and Feigon,J. (1992) J. Am. Chem. Soc., 114, 781-783.
26. Cheatham,T.E. and Kollman,P.A. (1997) J. Am. Chem. Soc., 119, 4805-4825.
27. Radhakrishnan,I. and Patel,D.J. (1993) Structure, 1, 135-152.
28. Radhakrishnan,I. and Patel,D.J. (1994) Structure, 2, 17-32.
29. Ji,J., Hogan,M.E. and Gao,X. (1996) Structure, 4, 425-435.
30. Koshlap,K.M., Schultze,P., Brunar,H., Dervan,P.B. and Feigon,J. (1997) Biochemistry, 36, 2659-2668.
31. Nunn,C.M., Trent,J.O. and Neidle,S. (1997) FEBS Lett., 416, 86-89.
32. Lane,A.N. (1998) In Leontis,N.B. and SantaLucia,J. (eds), Molecular Modeling of Nucleic Acids, ACS Symposium Series 682. ACS, Washington, DC, pp. 106-121.
33. Gyi,J.I., Lane,A.N., Conn,G.L. and Brown,T. (1998) Biochemistry, 37, 73-80.
34. Live,D.H., Davis,D.G., Agosta,W.C. and Cowburn,D (1984) J. Am. Chem. Soc., 106, 1939-1941.
35. van Wijk,J., Huckriede,B.D., Ippel,J.H. and Altona,C. (1992) Methods Enzymol., 211, 286-306.