Variation in host specificity and gene content in strains from genetically isolated lineages of the ectomycorrhizal fungus Paxillus involutus s. lat

Mycorrhiza

Volumn 19, Issue 8, 2009, Pages 549-558

  Hedh, Jenny ^a   Johansson, Tomas ^a   Tunlid, Anders ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

Comparative genomics hybridization (CGH); Ectomycorrhizae; Gene duplications; Host specificity

Indexed keywords

FUNGAL DNA;

ECTOMYCORRHIZA; FUNGUS; GENETIC ANALYSIS; HOST SPECIFICITY; HYBRIDIZATION; MICROCOSM; MORPHOLOGY; PHYLOGENETICS; SYMBIOSIS;

ARTICLE; BASIDIOMYCETES; BIRCH; COMPARATIVE GENOMIC HYBRIDIZATION; FUNGAL GENE; GENETICS; GROWTH, DEVELOPMENT AND AGING; MICROARRAY ANALYSIS; MICROBIOLOGY; MYCORRHIZA; SPRUCE;

BASIDIOMYCOTA; BETULA; COMPARATIVE GENOMIC HYBRIDIZATION; DNA, FUNGAL; GENES, FUNGAL; MICROARRAY ANALYSIS; MYCORRHIZAE; PICEA;

BASIDIOMYCOTA; BETULA PENDULA; FUNGI; PAXILLUS; PAXILLUS INVOLUTUS; PAXILLUS OBSCUROSPORUS; PAXILLUS VALIDUS; PICEA; PICEA ABIES;

EID: 70350155440     PISSN: 09406360     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00572-009-0252-3     Document Type: Article

References (45)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410.
2. Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS (2004) UniProt: the Universal Protein knowledgebase. Nucl Acids Res 32:D115-D119.
3. Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25:25-29.
4. Brun A, Chalot M, Finlay RD, Söderström B (1995) Structure and function of the ectomycorrhizal association between Paxillus involutus (Batsch) Fr. and Betula pendula (Roth.). I. Dynamics of mycorrhiza formation. New Phytol 129:487-493.
5. Burgess T, Dell B, Malajczuk N (1994) Variation in mycorrhizal development and growth stimulation by 20 Pisolithus isolates inoculated on to Eucalyptus grandis W. Hill ex Maiden. New Phytol 127:731-739.
6. Cairney JWG (1999) Intraspecific physiological variation: implications for understanding functional diversity in ectomycorrhizal fungi. Mycorrhiza 9:125-135.
7. Carreto L, Eiriz MF, Gomes AC, Pereira PM, Schuller D, Santos MA (2008) Comparative genomics of wild type yeast strains unveils important genome diversity. BMC Genomics 9:524.
8. Duddridge JA (1986) The development and ultrastructure of ectomycorrhizas III. Compatible and incompatible interactions between Suillus grevillei (Klotzch) Sing., and 11 species of ectomycorrhizal host in vitro in the absence of exogenous carbohydrate. New Phytol 103:457-464.
9. Dunn B, Levine RP, Sherlock G (2005) Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures. BMC Genomics 6:53.
10. Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A 95:14863-14868.
11. 3- by Paxillus involutus in association with Betula pendula and Picea abies as affected by substrate pH. New Phytol 128:629-637.
12. 15N-labelled ammonium by Pinus sylvestris plants infected with four different ectomycorrhizal fungi. New Phytol 110:59-66.
13. Finn RD, Mistry J, Schuster-Bockler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A (2006) Pfam: clans, web tools and services. Nucl Acids Res 34:D247-D251.
14. Fries N (1985) Intersterility groups in Paxillus involutus. Mycotaxon 24:403-410.
15. 2 production. Plant Biol 6:91-99.
16. Goffeau A, Park J, Paulsen IT, Jonniaux JL, Dinh T, Mordant P, Saier MH Jr (1997) Multidrug-resistant transport proteins in yeast: complete inventory and phylogenetic characterization of yeast open reading frames with the major facilitator superfamily. Yeast 13:43-54.
17. Gresham D, Dunham MJ, Botstein D (2008) Comparing whole genomes using DNA microarrays. Nat Rev Genet 9:291-302.
18. Hahn C, Agerer R (1999) Studies on the Paxillus involutus-complex. Nova Hedwigia 69:241-310.
19. Hedh J, Samson P, Erland S, Tunlid A (2008) Multiple gene genealogies and species recognition in the ectomycorrhizal fungus Paxillus involutus. Mycol Res 112:965-975.
20. Hu G, Liu I, Sham A, Stajich JE, Dietrich FS, Kronstad JW (2008) Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans. Genome Biol 9:R41.
21. Johansson T, Le Quéré A, Ahrén D, Söderström B, Erlandsson R, Lundeberg J, Uhlén M, Tunlid A (2004) Transcriptional responses of Paxillus involutus and Betula pendula during formation of ectomycorrhizal root tissue. Mol Plant Microbe Interact 17:202-215.
22. Laiho O (1970) Paxillus involutus as a mycorrhizal symbiont of forest trees. Acta Forest Fenn 106:1-73.
23. Lamhamedi MS, Fortini JA, Kope HH, Kropp BR (1990) Genetic varaition in ectomycorrhiza formation by Pisolithus arhizus on Pinus pinaster and Pinus banksiana. New Phytol 115:689-697.
24. Le Quéré A, Johansson T, Tunlid A (2002) Size and complexity of the nuclear genome of the ectomycorrhizal fungus Paxillus involutus. Fung Genet Biol 36:234-241.
25. Le Quéré A, Schützendübel A, Rajashekar B, Canbäck B, Hedh J, Erland S, Johansson T, Tunlid A (2004) Divergence in gene expression related to variation in host specificity of an ectomycorrhizal fungus. Mol Ecol 13:3809-3819.
26. Le Quéré A, Astrup-Eriksen K, Rajashekar B, Schützendübel A, Canbäck B, Johansson T, Tunlid A (2006) Screening for rapidly evolving genes in the ectomycorrhizal fungus Paxillus involutus using cDNA microarrays. Mol Ecol 15:535-550.
27. Lynch M (2007) The frailty of adaptive hypotheses for the origins of organismal complexity. Proc Natl Acad Sci U S A 104:8597-8604.
28. Manning G, Plowman GD, Hunter T, Sudarsanam S (2002) Evolution of protein kinase signaling from yeast to man. Trends Biochem Sci 27:514-520.
29. Martin F, Aerts A, Ahren D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buee M, Brokstein P, Canback B, Cohen D, Courty PE, Coutinho PM, Delaruelle C, Detter JC, Deveau A, DiFazio S, Duplessis S, Fraissinet-Tachet L, Lucic E, Frey-Klett P, Fourrey C, Feussner I, Gay G, Grimwood J, Hoegger PJ, Jain P, Kilaru S, Labbe J, Lin YC, Legue V, Le TF, Marmeisse R, Melayah D, Montanini B, Muratet M, Nehls U, Niculita-Hirzel H, Oudot-Le Secq MP, Peter M, Quesneville H, Rajashekar B, Reich M, Rouhier N, Schmutz J, Yin T, Chalot M, Henrissat B, Kues U, Lucas S, van de PY, Podila GK, Polle A, Pukkila PJ, Richardson PM, Rouze P, Sanders IR, Stajich JE, Tunlid A, Tuskan G, Grigoriev IV (2008) The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature 452:88-92.
30. Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, Chapman J, Helfenbein KG, Ramaiya P, Detter JC, Larimer F, Coutinho PM, Henrissat B, Berka R, Cullen D, Rokhsar D (2004) Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat Biotechnol 22:695-700.
31. Molina R, Trappe JM (1982) Patterns of ectomycorrhizal host specificity and potential among pacific northwest conifers and fungi. Forest Sci 28:423-458.
32. Molina R, Massicotte H, Trappe JM (1992) Specificity phenomena in mycorrhizal symbiosis: community-ecological consequences and practical implications. In: Allen MF (ed) Mycorrhizal functioning, an interactive plant-fungal process. Chapmann and Hall, New York, pp 357-423.
33. Moran G, Stokes C, Thewes S, Hube B, Coleman DC, Sullivan D (2004) Comparative genomics using Candida albicans DNA microarrays reveals absence and divergence of virulence-associated genes in Candida dubliniensis. Microbiology 150:3363-3382.
34. Nelson DR (1999) Cytochrome P450 and the individuality of species. Arch Biochem Biophys 369:1-10.
35. Rajashekar B, Samson P, Johansson T, Tunlid A (2007) Evolution of nucleotide sequences and expression patterns of hydrophobin genes in the ectomycorrhizal fungus Paxillus involutus. New Phytol 174:399-411.
36. Ridley AJ (2001) Rho family proteins: coordinating cell responses. Trends Cell Biol 11:471-477.
37. Smith SE, Read DJ (eds) (1997) Mycorrhizal symbiosis, 2nd edn. Academic, San Diego.
38. Taylor AF, Alexander I (2005) The ectomycorrhizal symbiosis: life in the real world. Mycologist 19:102-112.
39. Trappe JM (1962) Fungus associates of ectotrophic mycorrhizae. Bot Rev 28:538-606.
40. Tunlid A, Talbot NJ (2002) Genomics of parasitic and symbiotic fungi. Curr Opin Microbiol 5:513-519.
41. Westfall PJ, Ballon DR, Thorner J (2004) When the stress of your environment makes you go HOG wild. Science 306:1511-1512.
42. Winzeler EA, Castillo-Davis CI, Oshiro G, Liang D, Richards DR, Zhou Y, Hartl DL (2003) Genetic diversity in yeast assessed with whole-genome oligonucleotide arrays. Genetics 163:79-89.
43. Wolfinger RD, Gibson G, Wolfinger ED, Bennett L, Hamadeh H, Bushel P, Afshari C, Paules RS (2001) Assessing gene significance from cDNA microarray expression data via mixed models. J Comp Biol 8:625-637.
44. Wong KKY, Montpetit D, Piche Y, Lei J (1990) Root colonization by four closely related genotypes of the ectomycorrhizal basidiomycete Laccaria bicolor (Maire) Orton - comparative studies using electron microscopy. New Phytol 116:669-680.
45. Wösten HA (2001) Hydrophobins: multipurpose proteins. Annu Rev Microbiol 55:625-646.