Evaluation of flowering cherry species, hybrids, and cultivars using simple sequence repeat markers

Journal of the American Society for Horticultural Science

Volumn 134, Issue 4, 2009, Pages 435-444

  Ma, Hongmei ^a   Olsen, Richard ^a   Pooler, Margaret ^a   Kramer, Matthew ^b  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Genetic diversity; Germplasm; Molecular; Ornamental; Plant breeding; Prunus

Indexed keywords

PRUNUS; PRUNUS SERRULATA VAR. LANNESIANA;

EID: 70350071022     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.134.4.435     Document Type: Article

References (43)

1. Bliss, F.A., S. Arulsekar, M.R. Foolad, V. Becerra, A.M. Gillen, M.L. Warburton, A.M. Dandekar, G.M. Kocsisne, and K.K. Mydin. 2002. An expanded genetic linkage map of Prunus based on an interspecific cross between almond and peach. Genome 45:520-529.
2. Bortiri, E., B. Vanden Heuvel, and D. Potter. 2006. Phylogenetic analysis of morphology in Prunus reveals extensive homoplasy. Plant Syst. Evol. 259:53-71.
3. Bortiri, E., S. Oh, J. Jiang, S. Baggett, A. Granger, C. Weeks, M. Buckingham, D. Potter, and D.E. Parfitt. 2001. Phylogeny and systematics of Prunus (Rosaceae) as determined by sequence analysis of ITS and the chloroplast trnL-trnF spacer DNA. Syst. Bot. 26:797-807.
4. Brettin, T.S., R. Karle, E.L. Crowe, and A.F. Lezzoni. 2000. Chloroplast inheritance and DNA variation in sweet, sour, and ground cherry. J. Hered. 91:75-79.
5. Cantini, C., A.F. Iezzoni, W.F. Lamboy, M. Boritzki, and D. Struss. 2001. DNA fingerprinting of tetraploid cherry germplasm using simple sequence repeats. J. Amer. Soc. Hort. Sci. 126:205-209.
6. Contreras, R.N. and T.G. Ranney. 2007. Reproductive behavior of diploid and allotetraploid Rhododendron L. 'Fragrant Affinity'. HortScience 42:31-34.
7. Darlington, C.D. and A.P. Wylie. 1955. Chromosome atlas of flowering plants. George Allen & Unwin, London.
8. Dirlewanger, E., P. Cosson, M. Tavaud, M.J. Aranzana, C. Poizat, A. Zanetto, P. Arus, and F. Laigret. 2002. Development of microsatellite markers in peach (Prunus persica (L.) Batsch) and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.). Theor. Appl. Genet. 105:127-138.
9. Downey, S.L. and A.F. Iezzoni. 2000. Polymorphic DNA markers in black cherry (Prunus serotina) are identified using sequences from sweet cherry, peach, and sour cherry. J. Amer. Soc. Hort. Sci. 125:76-90.
10. Faust, M. and D. Suranyi. 1997. Origin and dissemination of cherry. Hort. Rev. (Amer. Soc. Hort. Sci.) 19:263-317.
11. Flower Association of Japan. 1982. Manual of Japanese flowering cherries. Flower Assn. of Japan, Tokyo.
12. Ingram, C. 1929. Notes on Japanese cherries II. J. Royal Hort. Soc. 54:159-180.
13. Ingram, C. 1970. A garden of memories. H.F. and G. Witherby, London.
14. Innan, H., R. Terauchi, N.T. Miyashita, and K. Tsunewaki. 1995. DNA fingerprinting study on the intraspecific variation and the origin of Prunus yedoensis (Someiyoshino). Jpn. J. Genet. 70:185-196.
15. Jacobsen, A.L. 1996. North American landscape trees. Ten Speed Press, Berkeley, CA.
16. Jefferson, R.M. and K.K. Wain. 1984. The nomenclature of cultivated Japanese flowering cherries (Prunus): The Sato-zakura group. U.S. Dept. of Agr., National Arboretum Contribution No. 5.
17. Kaneko, T., T. Terachi, and K. Tsunewaki. 1986. Studies on the origin of crop species by restriction endonuclease analysis of organellar DNA. II. Restriction analysis of ctDNA of 11 Prunus species. Jpn. J. Genet. 61:157-168.
18. Kuitert, W. 1999. Japanese flowering cherries. Timber Press, Portland, OR.
19. Lee, S. and J. Wen. 2001. A phylogenetic analysis of Prunus and the Amygdaloideae (Rosaceae) using ITS sequences of nuclear ribosomal DNA. Amer. J. Bot. 88:150-160.
20. Liu, W., X. Chen, G. Liu, Q. Liang, T. He, and J. Feng. 2007. Interspecific hybridization of Prunus persica with P. armeniaca and P. salicina using embryo rescue. Plant Cell Tissue Organ Cult. 88:289-299.
21. Mnejja, M., J. Garcia-Mas, W. Howad, and P. Arus. 2005. Development and transportability across Prunus species of 42 polymorphic almond microsatellites. Mol. Ecol. Notes 5:531-535.
22. Notcutt, R.C. and R.F. Notcutt. 1935. Flowering cherries. J. Royal Hort. Soc. 60:354-362.
23. Ohta, S., T. Katsuki, T. Tanaka, T. Hayashi, Y. Sato, and T. Yamamoto. 2005. Genetic variation in flowering cherries (Prunus subgenus Cerasus) characterized by SSR markers. Breed. Sci. 55:415-424.
24. Ohta, S., T. Yamamoto, C. Nishitani, T. Katsuki, H. Iketani, and M. Omura. 2007. Phylogenetic relationships among Japanese flowering cherries (Prunus subgenus Cerasus) based on nucleotide sequences of chloroplast DNA. Plant Syst. Evol. 263:209-225.
25. Parks, E.J., J.W. Moyer, and J.H. Lyerly. 2006. Identification of fluorescent AFLP and SSR markers for differentiation and analysis of New Guinea impatiens. J. Amer. Soc. Hort. Sci. 131:622-631.
26. Pooler, M.R. 2007. 'Dream Catcher' and 'First Lady' flowering cherries. HortScience 42:174-175.
27. Powell, W., M. Morgante, C. Andre, M. Hanafey, J. Vogel, S. Tingey, and A. Rafalski. 1996. The comparison of RFLP, RAPD, AFLP, and SSR (microsattelite) markers for germplasm analysis. Mol. Breed. 2:225-238.
28. R Development Core Team. 2006. The R project for statistical computing. 14 May 2009. .
29. Rehder, A. 1940. Manual of cultivated trees and shrubs hardy in North America exclusive of the subtropical and warmer temperate regions. 2nd ed. Macmillan, New York.
30. Roh, M.S., E. Cheong, I. Choi, and Y. Joung. 2007. Characterization of wild Prunus yedoensis analyzed by inter-simple sequence repeat and chloroplast DNA. Scientia Hort. 114:121-128.
31. Schuelke, M. 2000. An economic method for the fluorescent labeling of PCR fragments. Nat. Biotechnol. 18:233-234.
32. Shimodaira, H. 2004. Approximately unbiased tests of regions using multistep-multiscale bootstrap resampling. Ann. Stat. 32:2616-2641.
33. Shimodaira, H. 2006. Scaleboot: Approximately unbiased p-values via multiscale bootstrap. 14 May 2009. .
34. Sosinski, B., M. Gannavarapu, L.D. Hager, L.E. Beck, G.J. King, C.D. Ryder, S. Rajapakse, W.V. Baird, R.E. Ballard, and A.G. Abbott. 2000. Characterization of microsatellite markers in peach [Prunus persica (L.) Batsch]. Theor. Appl. Genet. 101:421-428.
35. Steiner, J.J., C.J. Polemba, R.G. Fjellstrom, and L.F. Elliott. 1995. A rapid one-tube genomic DNA extraction process for PCR and RAPD analyses. Nucleic Acids Res. 23:2569-2570.
36. Suzuki, R. and H. Shimodaira. 2006. pvclust: Hierarchical clustering with p-values via multiscale bootstrap resampling. 14 May 2009. .
37. Takenaka, Y. 1963. The origin of the yoshino cherry tree. J. Hered. 54:207-211.
38. Takenaka, Y. 1965. Studies on the genus Prunus II - the origin of Prunus yedoensis, continued. Bot. Mag. Tokyo 78:319-331.
39. Testolin, R., T. Marrazzo, G. Cipriani, R. Quarta, I. Verde, M.T. Dettori, M. Pancaldi, and S. Sansavini. 2000. Microsatellite DNA in peach (Prunus persica L. Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome 43:512-520.
40. U.S. Department of Agriculture. 2001. 1998 Census of horticultural specialties. 14 May 2009. .
41. U.S. Department of Agriculture. 2009. Germplasm Resources Information Network (GRIN) - Online database. 14 May 2009. .
42. Valdes, A.M., M. Slatkin, and N.B. Freimer. 1993. Allele frequencies at microsatellite loci: The stepwise mutation model revisited. Genetics 133:737-749.
43. Weising, K. and R.C. Gardner. 1999. A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms. Genome 42:9-19.