Diversity and antagonistic activity of sea ice bacteria isolated from the sea of japan

Microbes and Environments

Volumn 23, Issue 3, 2008, Pages 209-214

  Romanenko, Lyudmila A ^a   Tanaka, Naoto ^b   Uchino, Masataka ^b   Kalinovskaya, Natalia I ^a   Mikhailov, Valery V ^a  

^a PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

Author keywords

Antagonistic activity; Phylogeny; Seaice bacteria

Indexed keywords

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); BACTEROIDETES; GAMMAPROTEOBACTERIA; MARINOMONAS; MARINOMONAS PRIMORYENSIS; NOCARDIOIDES; PSEUDOMONAS; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS FLUORESCENS GROUP; PSEUDOMONAS PROTEOLYTICA; PSEUDOMONAS VERONII; PSYCHROBACTER; PSYCHROBACTER FOZII; PSYCHROBACTER GLACINCOLA; PSYCHROBACTER MARITIMUS; PSYCHROBACTER URATIVORANS; SHEWANELLA;

EID: 70349913618     PISSN: 13426311     EISSN: 13426311     Source Type: Journal    
DOI: 10.1264/jsme2.23.209     Document Type: Article

References (39)

1. Amann, R.I., W. Ludwig, and K.H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. MicroBiol. Rev. 59:143-169.
2. Brown, M.V., and J.P. Bowman. 2001. A molecular phylogenetic survey of sea-ice microbial communities (SIMCO). FEMS Microbiol. Ecol. 35:267-275.
3. Barbeyron, T., F. Carpentier, S. LHaridon, M. Schiller, G. Michel, and R. Amann. 2008. Description of Maribacter forsetii sp. nov., marine bacteria of the family Flavobacteriaceae, isolated from North Sea water, and emended description of the genus Maribacter. Int. J. Syst. Evol. Microbiol. 58:790-797.
4. Berg, G., L. Eberi, and A. Hartmann. 2005. The rhizosphere as a reservoir for opportunistic human pathogenic bacteria. Environ. Micro- biol. 7:1673-1685.
5. Bowman, J.P., J. Cavanagh, J.J. Austin, and K. Sanderson. 1996. Novel Psychrobacter species from Antarctic ornithogenic soils. Int. J. Syst. Bacteriol. 46:841-848.
6. Bowman, J.P., S.A. McCammon, M.V. Brown, D.S. Nichols, and T.A. McMeekin. 1997. Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl. Environ. Microbiol. 63:3068-3078.
7. Bowman, J.P., S.A. McCammon, J.L. Brown, P.D. Nichols, and T.A. McMeekin. 1997. Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from Antarctic lacustrine and sea ice habitats. Int. J. Syst. Bacteriol. 47:670-677.
8. Bowman, J.P., S.A. McCammon, D.S. Nichols, J.H. Skerratt, S.M. Rea, P.D. Nichols, and T.A. McMeekin. 1997. Shewanella gelidima- rina sp. nov. and Shewanella frigidimarina sp. nov., novel antarctic species with the ability to produce eicosapentaenoic acid (20:5co3) and grow anaerobically by dissimilatory Fe(III) reduction. Int. J. Syst. Bacteriol. 47:1040-1047.
9. Bowman, J.P., D.S. Nichols, and T.A. McMeekin. 1997. Psychro- bacter glacincola sp. nov., a halotolerant, psychrophilic bacterium isolated from Antarctic sea ice. Syst. Appl. Microbiol. 20:209-215.
10. Bowman, J.P., S.A. McCammon, J.L. Brown, and T.A. McMeekin. 1998. Glaciecola punicea gen. nov., sp. nov. and Glaciecola pallidula gen. nov., sp. nov.: psychrophilic bacteria from Antarctic sea-ice habitats. Int. J. Syst. Bacteriol. 48:1213-1222.
11. Bowman, J.P., S.A. McCammon, T. Lewis, J.H. Skerratt, J.L. Brown, D.S. Nichols, and T.A. McMeekin. 1998. Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology. 144:1601-1609.
12. Bozal, N., M.J. Montes, E. Tudela, F. Jimenez, and J. Guinea. 2002. Shewanella frigidimarina and Shewanella livingstonensis sp. nov. isolated from Antarctic coastal areas. Int. J. Syst. Evol. Microbiol. 52:195-205.
13. Bozal, N., M.J. Montes, E. Tudela, and J. Guinea. 2003. Characterization of several Psychrobacter strains isolated from Antarctic environments and description of Psychrobacter luti sp. nov. and Psychrobacter fozii sp. nov. Int. J. Syst. Evol. Microbiol. 53:1093-1100.
14. Brinkmeyer, R., K. Knittel, J. Jirgens, H. Weyland, R. Amann, and E. Helmke. 2003. Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Appl. Environ. Microbiol. 69:6610-6619.
15. De Ley, J., H. Cattoir, and A. Reynaerts. 1970. The quantitative measurement of DNA hybridization from renaturation rates. Eur. J. Bio- chem. 12:133-142.
16. Denner, E.B.M., B. Mark, H.J. Busse, M. Turkiewicz, and W. Lubitz. 2001. Psychrobacter proteolyticus sp. nov., a psychrotrophic, halotol-erant bacterium isolated from the Antarctic krill Euphausia superba Dana, excreting a cold-adapted metalloprotease. Syst. Appl. Microbiol. 24:44-53.
17. Felsenstein, J. 1989. PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics. 5:164-166.
18. Helmke, E., and H. Weyland. 1995. Bacteria in sea ice and underlying water of the eastern Weddell Sea in midwinter. Mar Ecol. Prog. Ser. 117:269-287.
19. Junge, K., J.J. Gosink, H.-G. Hoppe, and J.T. Staley. 1998. Arthro- bacter, Brachybacterium, and Planococcus isolates identified from antarctic sea ice brine. Description of Planococcus mcmeekinii, sp. nov. Syst. Appl. Microbiol. 21:306-314.
20. Junge, K., F. Imhoff, T. Staley, and J.W. Deming. 2002. Phylogenetic diversity of numerically important Arctic sea ice bacteria at subzero temperature. Microbiol. Ecol. 43:315-328.
21. Minkwitz, A., and G. Berg. 2001. Comparison of antifungal activities and 16S ribosomal DNA sequences of clinical and environmental isolates of Stenotrophomonas maltophilia. J. Clin. Microbiol. 39:139-145.
22. Mock, T., and D.N. Thomas. 2005. Recent advances in sea-ice microbiology. Environ. Microbiol. 7:605-619.
23. Nakagawa, T., K., Mori, C., Kato, R. Takahashi, and T. Tokuyama. 2007. Distribution of cold-adapted ammonia-oxidizing microorganisms in the deep-ocean of the northeastern Japan Sea. Microbes Environ. 22:365-372.
24. Nedashkovskaya, O.I., S.B. Kim, S.K. Han, A.M. Lysenko, M. Rohde, M.-S. Rhee, G.M. Frolova, E. Falsen, V.V. Mikhailov, and K.S. Bae. 2004. Maribacter gen. nov., a new member of the family Flavobacteriaceae, isolated from marine habitats, containing the species Maribacter sedimenticola sp. nov., Maribacter aquivivus sp. nov., Maribacter orientalis sp. nov. and Maribacter ulvicola sp. nov. Int. J. Syst. Evol. Microbiol. 54:1017-1023.
25. OBrien, A., R. Sharp, N.J. Russel, and S. Roller. 2004. Antarctic bacteria inhibit growth of food-borne microorganisms at low temperatures. FEMS Microbiol. Ecol. 48:157-167.
26. Reddy, G.S.N., J.S.S. Prakash, G.I. Matsumoto, E. Stackebrandt, and S. Shivaji. 2002. Arthrobacter roseus sp. nov., a psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. Int. J. Syst. Evol. Microbiol. 52:1017-1021.
27. Reddy, G.S.N., J.S.S. Prakash, V. Prabahar, G.I. Matsumoto, E. Stackebrandt, and S. Shivaji. 2003. Kocuria polaris sp. nov., an orange pigmented psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. Int. J. Syst. Evol. Microbiol. 53:183-187.
28. Reddy, G.S.N., G.I. Matsumoto, P. Schumann, E. Stackebrandt, and S. Shivaji. 2004. Psychrophilic pseudomonads from Antarctica: Pseudomonas antarctica sp. nov., Pseudomonas meridiana sp. nov., and Pseudomonas proteolytica sp. nov. Int. J. Syst. Evol. Microbiol. 54:713-719.
29. Reid, G.A., and E.H.J. Gordon. 1999. Phylogeny of marine and freshwater Shewanella: reclassification of Shewanella putrefaciens NCIMB 400 as Shewanella frigidimarina. Int. J. Syst. Bacteriol. 49:189-191.
30. Romanenko, L.A., M. Uchino, V.V. Mikhailov, N.V. Zhukova, and T. Uchimura. 2003. Marinomonas primoryensis sp. nov., a new psy- chrophilic bacterium isolated from coastal sea-ice of the Sea of Japan. Int. J. Syst. Evol. Microbiol. 53:829-832.
31. Romanenko, L.A., A.M. Lysenko, M. Rohde, V.V. Mikhailov, and E. Stackebrandt. 2004. Psychrobacter maritimus sp. nov., and Psychro- bacter arenosus sp. nov., isolated from coastal sea-ice and sediments of the Sea of Japan. Int. J. Syst. Evol. Microbiol. 54:1741-1745.
32. Romanenko, L.A., M. Uchino, E. Falsen, G.M. Frolova, N.V. Zhukova, and V.V. Mikhailov. 2005. Pseudomonas pachastrellae sp. nov., isolated from a marine sponge. Int. J. Syst. Evol. Microbiol. 55:919-924.
33. Romanenko, L.A., M. Uchino, G.M. Frolova, N. Tanaka, N.I. Kalinovskaya, N. Latyshev, and V.V. Mikhailov. 2007. Sphingomonas molluscorum sp. nov., a novel marine isolate with antimicrobial activity. Int. J. Syst. Evol. Microbiol. 57:358-363.
34. Shida, O., H. Takagi, K. Kadowaki, L.K. Nakamura, and K. Koma- gata. 1997. Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int. J. Syst. Bacteriol. 47:289-298.
35. Shivaji, S., N.S. Rao, L. Saisree, V. Sheth, G.S.N. Reddy, and P.M. Bhargava. 1989. Isolation and identification of Pseudomonas spp. from Schirmacher Oasis, Antarctica. Appl. Environ. Microbiol. 55:767-770.
36. Shivaji, S., G.S.N. Reddy, P.U.M. Raghavan, N.B. Sarita, and D. Delille. 2004. Psychrobacter salsus sp. nov. and Psychrobacter ade- liensis sp. nov. isolated from fast ice from Adelie Land, Antarctica. Syst. Appl. Microbiol. 27:628-635.
37. Shivaji, S., G.S.N. Reddy, K. Suresh, P. Gupta, S. Chintalapati, P. Schumann, E. Stackebrandt, and G.I. Matsumoto. 2005. Two novel Psychrobacter species from Antarctica: description of Psychrobacter vallis sp. nov. and Psychrobacter aquaticus sp. nov. Int. J. Syst. Evol. Microbiol. 55:757-762.
38. Smibert, R.M., and N.R. Krieg. 1994. Phenotypic characterization. pp. 607-655. In P. Gerhardt, R.G.E. Murray, W.A. Wood, and N.R. Krieg (ed.), Methods for General and Molecular Bacteriology, American Society for Microbiology, Washington, D.C.
39. Staley, J.T., and J.J. Gosink. 1999. Poles apart: biodiversity and biogeography of sea ice bacteria. Annu. Rev. Microbiol. 53:189-215.