Arabidopsis actin-related protein ARP5 in multicellular development and DNA repair

Developmental Biology

Volumn 335, Issue 1, 2009, Pages 22-32

  Kandasamy, Muthugapatti K ^a   McKinney, Elizabeth C ^a   Deal, Roger B ^a   Smith, Aaron P ^a   Meagher, Richard B ^a  

^a University of Georgia   (United States)

Author keywords

Arabidopsis thaliana; Chromatin remodeling; DNA damaging agents; Double stranded DNA break repair; Epigenetic control; Nuclear ARPs

Indexed keywords

ACTIN RELATED PROTEIN; ACTIN RELATED PROTEIN 4; ACTIN RELATED PROTEIN 5; PLANT DNA; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; CELL NUCLEUS; CONTROLLED STUDY; DNA DAMAGE; DNA REPAIR; EPIGENETICS; GENE FUNCTION; GENETIC REGULATION; INTERPHASE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLANT DEVELOPMENT; PLANT GROWTH; PLANT LEAF; PLANT STOMA; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DEPLETION; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; REPORTER GENE; TOBACCO; WILD TYPE;

ARABIDOPSIS; ARABIDOPSIS THALIANA; MAMMALIA; NICOTIANA TABACUM;

EID: 70349785075     PISSN: 00121606     EISSN: 1095564X     Source Type: Journal    
DOI: 10.1016/j.ydbio.2009.08.006     Document Type: Article

References (45)

1. Blessing C.A., Ugrinova G.T., and Goodson H.V. Actin and ARPs: action in the nucleus. Trends Cell Biol. 14 (2004) 435-442
2. Britt A.B., and May G.D. Re-engineering plant gene targeting. Trends Plant Sci. 8 (2003) 90-95
3. Brzeski J., and Jerzmanowski A. Deficient in DNA methylation 1 (DDM1) defines a novel family of chromatin-remodeling factors. J. Biol. Chem. 278 (2003) 823-828
4. Conaway R.C., and Conaway J.W. The INO80 chromatin remodeling complex in transcription, replication and repair. Trends Biochem. Sci. 34 (2009) 71-77
5. Csink A.K., and Henikoff S. Genetic modification of heterochromatic association and nuclear organization in Drosophila. Nature 381 (1996) 529-531
6. Deal R.B., Kandasamy M.K., McKinney E.C., and Meagher R.B. The nuclear actin-related protein ARP6 is a pleiotropic developmental regulator required for the maintenance of FLOWERING LOCUS C expression and repression of flowering in Arabidopsis. Plant Cell 17 (2005) 2633-2646
7. Deal R.B., Topp C.N., McKinney E.C., and Meagher R.B. Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A.Z. Plant Cell 19 (2007) 74-83
8. Ford J., Odeyale O., and Shen C.H. Activator-dependent recruitment of SWI/SNF and INO80 during INO1 activation. Biochem. Biophys. Res. Commun. 373 (2008) 602-606
9. Fritsch O., Benvenuto G., Bowler C., Molinier J., and Hohn B. The INO80 protein controls homologous recombination in Arabidopsis thaliana. Mol. Cell 16 (2004) 479-485
10. Galli A., and Schiestl R.H. Cell division transforms mutagenic lesions into deletion-recombinagenic lesions in yeast cells. Mutat. Res. 429 (1999) 13-26
11. Guttenplan J.B., Khmelnitsky M., Haesevoets R., and Kosinska W. Mutational spectrum of bleomycin in lacZ mouse kidney: a possible model for mutational spectrum of reactive oxygen species. Mutat. Res. 554 (2004) 185-192
12. Hajdukiewicz P., Svab Z., and Maliga P. The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Mol. Biol. 25 (1994) 989-994
13. Harlow E., and Lane D.P. Using Antibodies: A Laboratory Manual (1999), CSH Laboratory Press, Coldspring Harbor, NY. 495
14. Jefferson R.A., Kavanagh T.A., and Bevan M.W. GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6 (1987) 3901-3907
15. Jiang Y.W., and Stillman D.J. Epigenetic effects on yeast transcription caused by mutations in an actin-related protein present in the nucleus. Genes Dev. 10 (1996) 604-619
16. Jonsson Z.O., Jha S., Wohlschlegel J.A., and Dutta A. Rvb1p/Rvb2p recruit Arp5p and assemble a functional Ino80 chromatin remodeling complex. Mol. Cell 16 (2004) 465-477
17. Kakutani T., Jeddeloh J.A., and Richards E.J. Characterization of an Arabidopsis thaliana DNA hypomethylation mutant. Nucleic Acids Res. 23 (1995) 130-137
18. Kakutani T., Jeddeloh J.A., Flowers S.K., Munakata K., and Richards E.J. Developmental abnormalities and epimutations associated with DNA hypomethylation mutations. Proc. Natl. Acad. Sci. U. S. A. 93 (1996) 12406-12411
19. Kandasamy M.K., McKinney E.C., and Meagher R.B. Cell cycle-dependent association of Arabidopsis actin-related proteins AtARP4 and AtARP7 with the nucleus. Plant J. 33 (2003) 939-948
20. Kandasamy M.K., Deal R.B., McKinney E.C., and Meagher R.B. Plant actin-related proteins. Trends Plant Sci. 9 (2004) 196-202
21. Kandasamy M.K., Deal R.B., McKinney E.C., and Meagher R.B. Silencing the nuclear actin-related protein AtARP4 in Arabidopsis has multiple effects on plant development, including early flowering and delayed floral senescence. Plant J. 41 (2005) 845-858
22. Kandasamy M.K., McKinney E.C., Deal R.B., and Meagher R.B. Arabidopsis ARP7 is an essential actin-related protein required for normal embryogenesis, plant architecture, and floral organ abscission. Plant Physiol. 138 (2005) 2019-2032
23. Kandasamy M.K., McKinney E.C., and Meagher R.B. ACTIN-RELATED PROTEIN8 encodes an F-box protein localized to the nucleolus in Arabidopsis. Plant Cell Physiol. 49 (2008) 858-863
24. Kitayama K., Kamo M., Oma Y., Matsuda R., Uchida T., Ikura T., Tashiro S., Ohyama T., Winsor B., and Harata M. The human actin-related protein hArp5: nucleo-cytoplasmic shuttling and involvement in DNA repair. Exp. Cell Res. 315 (2009) 206-217
25. Koc A., Wheeler L.J., Mathews C.K., and Merrill G.F. Hydroxyurea arrests DNA replication by a mechanism that preserves basal dNTP pools. J. Biol. Chem. 279 (2004) 223-230
26. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 (1970) 680-685
27. Meagher R.B., Deal R.B., Kandasamy M.K., and McKinney E.C. Nuclear actin-related proteins as epigenetic regulators of development. Plant Physiol. 139 (2005) 1576-1585
28. Meagher R.B., Kandasamy M.K., Deal R.B., and McKinney E.C. Actin-related proteins in chromatin-level control of the cell cycle and developmental transitions. Trends Cell Biol. 17 (2007) 325-332
29. Meagher R.B., Kandasamy M.K., and McKinney E.C. Actin-related proteins in epigenetic control. Intern Rev. Cell. Mol. Biol. 277 (2009) 157-215
30. Mizuguchi G., Shen X., Landry J., Wu W.H., Sen S., and Wu C. ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303 (2004) 343-348
31. Muller J., Oma Y., Vallar L., Friederich E., Poch O., and Winsor B. Sequence and comparative genomic analysis of actin-related proteins. Mol. Biol. Cell 16 (2005) 5736-5748
32. Murashige T., and Skoog F. A revised medium for rapid growth and bioassays with tobacco tissue culture. Plant Physiol. 15 (1962) 473-497
33. Noh Y.S., and Amasino R.M. PIE1, an ISWI family gene, is required for FLC activation and floral repression in Arabidopsis. Plant Cell 15 (2003) 1671-1682
34. Olave I.A., Reck-Peterson S.L., and Crabtree G.R. Nuclear actin and actin-related proteins in chromatin remodeling. Annu. Rev. Biochem. 71 (2002) 755-781
35. Papamichos-Chronakis M., and Peterson C.L. The Ino80 chromatin-remodeling enzyme regulates replisome function and stability. Nat. Struct. Mol. Biol. 15 (2008) 338-345
36. Price P.W., McKinney E.C., Wang Y., Sasser L.E., Kandasamy M.K., Matsuuchi L., Milcarek C., Deal R.B., Culver D.G., and Meagher R.B. Engineered cell surface expression of membrane immunoglobulin as a means to identify monoclonal antibody-secreting hybridomas. J. Immunol. Methods 343 (2009) 28-41
37. Ruzicka D.R., Kandasamy M.K., McKinney E.C., Burgos-Rivera B., and Meagher R.B. The ancient subclasses of Arabidopsis ACTIN DEPOLYMERIZING FACTOR genes exhibit novel and differential expression. Plant J. 52 (2007) 460-472
38. Shaked H., Avivi-Ragolsky N., and Levy A.A. Involvement of the Arabidopsis SWI2/SNF2 chromatin remodeling gene family in DNA damage response and recombination. Genetics 173 (2006) 985-994
39. Shen X., Mizuguchi G., Hamiche A., and Wu C. A chromatin remodeling complex involved in transcription and DNA processing. Nature 406 (2000) 541-544
40. Shen X., Ranallo R., Choi E., and Wu C. Involvement of actin-related proteins in ATP-dependent chromatin remodeling. Mol. Cell 12 (2003) 147-155
41. Shimada K., Oma Y., Schleker T., Kugou K., Ohta K., Harata M., and Gasser S.M. Ino80 chromatin remodeling complex promotes recovery of stalled replication forks. Curr. Biol. 18 (2008) 566-575
42. Szerlong H., Hinata K., Viswanathan R., Erdjument-Bromage H., Tempst P., and Cairns B.R. The HSA domain binds nuclear actin-related proteins to regulate chromatin-remodeling ATPases. Nat. Struct. Mol. Biol. 15 (2008) 469-476
43. van Attikum H., Fritsch O., Hohn B., and Gasser S.M. Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair. Cell 119 (2004) 777-788
44. West C.E., Waterworth W.M., Story G.W., Sunderland P.A., Jiang Q., and Bray C.M. Disruption of the Arabidopsis AtKu80 gene demonstrates an essential role for AtKu80 protein in efficient repair of DNA double-strand breaks in vivo. Plant J. 31 (2002) 517-528
45. Zimmermann P., Hirsch-Hoffmann M., Hennig L., and Gruissem W. GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox (www.genevestigator.ethz.ch). Plant Physiol. 136 (2004) 2621-2632