Methylation-Sensitive Amplification Polymorphism of Epigenetic Changes in Cotton Under Salt Stress

Acta Agronomica Sinica

Volumn 35, Issue 4, 2009, Pages 588-596

  LI, Xue Lin ^a,b   LIN, Zhong Xu ^a   NIE, Yi Chun ^a   GUO, Xiao Ping ^a   ZHANG, Xian Long ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b HENAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

cotton; DNA methylation; methylation sensitive amplified polymorphism; RT PCR; salt stress

Indexed keywords

GOSSYPIUM HIRSUTUM;

EID: 70349771912     PISSN: 18752780     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1875-2780(08)60073-5     Document Type: Article

References (43)

1. Saze H., Mittelsten Scheid O., and Paszkowski J. Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis. Nat Genet 34 (2003) 65-69
2. Chan S.W.L., Henderson I.R., and Jacobsen S.E. Gardening the genome DNA methylation in Arabidopsis thaliana. Nat Rev Genet 6 (2005) 351-360
3. Razin A., and Cedar H. DNA methylation and gene expression. Microbiol Mol Biol Rev 55 (1991) 451-458
4. Li E. Chromatin modification and epigenetic reprogramming in mammalian development. Nat Rev Genet 3 (2002) 662-673
5. Jablonka E., Goiten R., Marcus M., and Cedar H. DNA hypomethylation causes an increase in DNase I sensitivity and an advance in the timing of replication of the entire X chromosome. Chromosoma 93 (1985) 152-156
6. Jullien P.E., Kinoshita T., Ohad N., and Berger F. Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting. Plant Cell 18 (2006) 1360-1372
7. Adams K.L., Percifield R., and Wendel J.F. Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid. Genetics 168 (2004) 2217-2226
8. Zluvova J., Janousek B., and Vyskot B. Immuno-histchemical study of DNA methylation dynamics during plant development. J Exp Bot 52 (2001) 2263-2273
9. Jaligot E., Beule T., and Rival A. Methylation-sensitive RFLPs: Characterisation of two oil palm markers showing somaclonal variation-associated polymorphism. Theor Appl Genet 104 (2002) 1263-1269
10. Mcclelland M., Nelson M., and Raschke E. Effect of site-specific modification on resistriction endonuclease and DNA modification methyltransferases. Nucl Acids Res 17 (1994) 3640-3659
11. Ashikawa I. Surveying CpG methylation at 5′-CCGG in the genomes of rice cultivars. Plant Mol Biol 45 (2001) 31-39
12. Cervera M.T., Ruiz-Garcia L., and Martinez-Zapater J.M. Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Genet Genomics 268 (2002) 543-552
13. Hao Y.J., and Deng X.X. Stress treatments and DNA methylation affected the somatic embryogenesis of Citrus callus. Acta Bot Sin 44 (2002) 673-677
14. Portis E., Acquadro A., Comino C., and Lanteri S. Analysis of DNA methylation during germination pepper (Capsicum annuum L.) seeds using methylation-sensitive amplification polymorphism (MSAP). Plant Sci 166 (2004) 169-178
15. Xiong L.M., Karen S.S., and Zhu J.K. Cell signaling during cold, drought, and salt stress. Plant Cell 14 suppl (2002) 165-183
16. Richards E.J., Peacock W.J., and Dennis E.S. DNA methylation, a key regulator of plant development and other processes. Curr Opin Genet Dev 10 (2000) 217-223
17. Xiao W., Custard K.D., Brown R.C., Lemmon B.E., Harada J.J., Goldberg R.B., and Fischer R.L. DNA methylation is critical for Arabidopsis embryogenesis and seed viability. Plant Cell 18 (2006) 805-814
18. Finnegan E.J., Genger R.K., Kovac K., Kovac K., Peacock W.J., and Dennis E.S. DNA methylation and the promotion of flowering by vernalization. Proc Natl Acad Sci USA 95 (1998) 5824-5829
19. Wassenegger M., and Pelissier T. A model for RNA-mediated gene silencing in higher plants. Plant Mol Biol 37 (1998) 349-362
20. Edward K., Catherine A., Jim H., Mark A., and Marc R. Cell-type-specific calcium responses to drought, salt and cold in the Arabidopsis root. Plant J 23 (2000) 267-278
21. Hu H.H., Dai M.Q., Yao J.L., Xiao B.Z., Li X.H., Zhang Q.F., and Xiong L.Z. Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proc Natl Acad Sci USA 103 (2006) 12987-12992
22. He X.J., Mu R.L., Cao W.H., Zhang Z.G., Zhang J.S., and Chen S.Y. AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. Plant J 44 (2005) 903-916
23. Lin Z.X., Zhang X.L., Nie Y.C., He D.H., and Wu M.Q. Construction of a genetic linkage map for cotton based on SRAP. Chin Sci Bull 48 (2003) 2063-2067
24. Zhu L.F., Tu L.L., Zeng F.C., Liu D.Q., and Zhang X.L. An improved simple protocol for isolation of high quality RNA from Gossypium spp. suitable for cDNA library construction. Acta Agron Sin 31 (2005) 1657-1659 (in Chinese with English abstract).
25. Zhao Y., Yu S., Xing C., Fan S., and Song M. Analysis of DNA methylation in cotton hybrids and their parents. Mol Biol 42 (2008) 169-178
26. + under the salinity stress on cotton. Cotton Sci 18 (2006) 279-283 (in Chinese with English abstract).
27. Richards E.J. DNA methylation and plant development. Trends Genet 13 (1997) 319-323
28. Yoder J.A., Walsh C.P., and Bester T.H. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet 13 (1997) 335-340
29. Khan M.A. Experimental assessment of salinity tolerance of Ceriops tagal seedlings and saplings from the Indus delta. Pakistan Aquatic Bot 70 (2001) 259-268
30. Lu G.Y., Wu X.M., Chen B.Y., Gao G.Z., and Xu K. Evaluation of genetic and epigenetic modification in rapeseed (Brassica napus) induced by salt stress. J Integr Plant Biol 49 (2007) 1599-1607
31. Parida A.K., and Das A.B. Salt tolerance and salinity effects on plants: A review. Ecotoxicol Environ Saf 60 (2005) 324-349
32. Spollen W.G., Sharp R.E., Saab I.N., and Wu Y. Regulation of cell expansion in roots and shoots at low water potentials. In: Smith J., and Griffiths H. (Eds). Water Deficits: Plant Responses from Cell to Community (1993), BIOS Scientific Publishers, Oxford 37-52
33. Van der Weele C.M., Spollen W.G., Sharp R.E., and Baskin T.I. Growth of Arabidopsis thaliana seedlings under water deficit studied by control of water potential in nutrient-agar media. J Exp Bot 51 (2000) 1555-1562
34. Deak K.I., and Malamy J. Osmotic regulation of root system architecture. Plant J 43 (2005) 17-28
35. Cervera M.T., Ruiz-Garcia L., and Martinez-Zapater J.M. Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Genet Genomics 268 4 (2002) 543-552
36. Ge C.L., Yang X.Y., Liu X.N., Sun J.H., Luo S.S., and Wang Z.G. Effect of heavy metal on levels of methylation in DNA of rice and wheat. J Plant Physiol Mol Biol 28 (2002) 363-368 (in Chinese with English abstract).
37. Labra M., Ghiani A., Citterio S., Sgorbati S., Sala F., Vannini C., Ruffini-Castiglione M., and Bracale M. Analysis of cytosine methylaion pattern in response to water deficit in pea root tips. Plant Biol 4 (2002) 694-699
38. Aina R., Sgorbati S., Santagostino A., Labra A., Ghiani A., and Citterio S. Specific hypomethylation of DNA is induced by heavy metals in white clover and industrial hemp. Physiol Plant 121 (2004) 472-480
39. Kovalchuk O., Burke P., Arkhipov A., Kuchma N., Jill James S., Kovalchuk I., and Pogribny I. Genome hypermethylation in Pinus silvestris of Chernobyl: A mechanism for radiation adaptation?. Mutation Res 529 (2003) 13-20
40. Kumar A., and Bennetzen J.L. Plant retrotransposons. Annu Rev Genet 33 (1999) 479-532
41. Feschotte C., Jiang N., and Wessler R.S. Plant retrotransposable elements: Where genetics meets genomics. Nat Rev Genet 3 (2002) 329-341
42. Cheng C., Daigen M., and Hirochika H. Epigenetic regulation of the rice retrotransposon Tos17. Mol Genet Genomics 276 (2006) 378-390
43. Kashkush K., Feldman M., and Levy A.A. Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat Genet 33 (2003) 102-106