-
1
-
-
0034821694
-
A proteomic view on genome-based signal peptide predictions
-
Antelmann H., Tjalsma H., Voigt B., Ohlmeier S., Bron S., van Dijl J.M. & Hecker M. 2001. A proteomic view on genome-based signal peptide predictions. Genome Res. 11: 1484-1502.
-
(2001)
Genome Res.
, vol.11
, pp. 1484-1502
-
-
Antelmann, H.1
Tjalsma, H.2
Voigt, B.3
Ohlmeier, S.4
Bron, S.5
van Dijl, J.M.6
Hecker, M.7
-
2
-
-
25844526505
-
The extracellular and cytoplasmic proteomes of the non-virulent Bacillus anthracis strain UM23C1-2
-
Antelmann H., Williams R.C., Miethke M., Wipat A., Albrecht D., Harwood C.R. & Hecker M. 2005. The extracellular and cytoplasmic proteomes of the non-virulent Bacillus anthracis strain UM23C1-2. Proteomics 5: 3684-3695.
-
(2005)
Proteomics
, vol.5
, pp. 3684-3695
-
-
Antelmann, H.1
Williams, R.C.2
Miethke, M.3
Wipat, A.4
Albrecht, D.5
Harwood, C.R.6
Hecker, M.7
-
4
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
Boeckmann B., Bairoch A., Apweiler R., Blatter M.C., Estreicher A., Gasteiger E., Martin M.J., Michoud K., O'Donovan C., Phan I., Pilbout S. & Schneider M. 2003. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 31: 365-370.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
Pilbout, S.11
Schneider, M.12
-
5
-
-
33748101074
-
Systematic screening of all signal peptides from Bacillus subtilis: A powerful strategy in optimizing heterologous protein secretion in Gram-positive bacteria
-
Brockmeier U., Caspers M., Freudl R., Jockwer A., Noll T. & Eggert T. 2006. Systematic screening of all signal peptides from Bacillus subtilis: a powerful strategy in optimizing heterologous protein secretion in Gram-positive bacteria. J. Mol. Biol. 362: 393-402.
-
(2006)
J. Mol. Biol.
, vol.362
, pp. 393-402
-
-
Brockmeier, U.1
Caspers, M.2
Freudl, R.3
Jockwer, A.4
Noll, T.5
Eggert, T.6
-
8
-
-
33748878164
-
Methods for predicting bacterial protein subcellular localization
-
Gardy J.L. & Brinkman F.S. 2006. Methods for predicting bacterial protein subcellular localization. Nat. Rev. Microbiol. 4: 741-751.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 741-751
-
-
Gardy, J.L.1
Brinkman, F.S.2
-
9
-
-
26444578263
-
SOSUIsignal: Software system for prediction of signal peptide and membrane protein
-
Gomi M., Akazawa F. & Mitaku S. 2000. SOSUIsignal: software system for prediction of signal peptide and membrane protein. Genome Informatics 11: 414-415.
-
(2000)
Genome Informatics
, vol.11
, pp. 414-415
-
-
Gomi, M.1
Akazawa, F.2
Mitaku, S.3
-
10
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson O., Brunak S., von Heijne G. & Nielsen H. 2007. Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2: 953-971.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
11
-
-
3242878999
-
PrediSi: Prediction of signal peptides and their cleavage positions
-
Web Server issue
-
Hiller K., Grote A., Scheer M., Munch R. & Jahn D. 2004. PrediSi: prediction of signal peptides and their cleavage positions. Nucleic Acids Res. 32(Web Server issue): 375-379.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 375-379
-
-
Hiller, K.1
Grote, A.2
Scheer, M.3
Munch, R.4
Jahn, D.5
-
12
-
-
27644444255
-
Evaluating eukaryotic secreted protein prediction
-
Klee E.W. & Ellis L.B. 2005. Evaluating eukaryotic secreted protein prediction. BMC Bioinformatics 6:256.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 256
-
-
Klee, E.W.1
Ellis, L.B.2
-
13
-
-
33746878779
-
Whole genome analysis of non-optimal codon usage in secretory signal sequences of Streptomyces coelicolor
-
Li Y.D., Li Y.Q., Chen J.S., Dong H.J., Guan W.J. & Zhou H. 2006. Whole genome analysis of non-optimal codon usage in secretory signal sequences of Streptomyces coelicolor. Biosystems 85: 225-230.
-
(2006)
Biosystems
, vol.85
, pp. 225-230
-
-
Li, Y.D.1
Li, Y.Q.2
Chen, J.S.3
Dong, H.J.4
Guan, W.J.5
Zhou, H.6
-
14
-
-
0033738137
-
A comparison of signal sequence prediction methods using a test set of signal peptides
-
Menne K.M., Hermjakob H. & Apweiler R. 2000. A comparison of signal sequence prediction methods using a test set of signal peptides. Bioinformatics 16: 741-742.
-
(2000)
Bioinformatics
, vol.16
, pp. 741-742
-
-
Menne, K.M.1
Hermjakob, H.2
Apweiler, R.3
-
15
-
-
0026609393
-
Protein secretion in gram-positive bacteria
-
Freudl R. 1992. Protein secretion in gram-positive bacteria. J. Biotechnol. 23: 231-240.
-
(1992)
J. Biotechnol.
, vol.23
, pp. 231-240
-
-
Freudl, R.1
-
16
-
-
27844495651
-
Protein transport in Archaea: Sec and twin arginine translocation pathways
-
Pohlschroder M., Gimenez M.I. & Jarrell K.F. 2005. Protein transport in Archaea: Sec and twin arginine translocation pathways. Curr. Opin. Microbiol. 8: 713-719.
-
(2005)
Curr. Opin. Microbiol.
, vol.8
, pp. 713-719
-
-
Pohlschroder, M.1
Gimenez, M.I.2
Jarrell, K.F.3
-
17
-
-
13444301472
-
A protein subcellular localization database for bacteria
-
Rey S., Acab M., Gardy J.L., Laird M.R., deFays K., Lambert C. & Brinkman F.S. 2005. A protein subcellular localization database for bacteria. Nucleic Acids Res. 33: 164-168.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 164-168
-
-
Rey, S.1
Acab, M.2
Gardy, J.L.3
Laird, M.R.4
deFays, K.5
Lambert, C.6
Brinkman, F.S.7
-
18
-
-
2942624227
-
Advances in the prediction of protein targeting signals
-
Schneider G. & Fechner U. 2004. Advances in the prediction of protein targeting signals. Proteomics 4: 1571-1580.
-
(2004)
Proteomics
, vol.4
, pp. 1571-1580
-
-
Schneider, G.1
Fechner, U.2
-
19
-
-
33847080827
-
Gpos-PLoc: An ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins
-
Shen H.B. & Chou K.C. 2007. Gpos-PLoc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins. Protein Eng. Des. Sel. 20: 39-46.
-
(2007)
Protein Eng. Des. Sel.
, vol.20
, pp. 39-46
-
-
Shen, H.B.1
Chou, K.C.2
-
20
-
-
31344470498
-
The extracellular proteome of Bacillus licheniformis grown in different media and under different nutrient starvation conditions
-
Voigt B., Schweder T., Sibbald M.J., Albrecht D., Ehrenreich A., Bernhardt J., Feesche J., Maurer K.H., Gottschalk G., van Dijl J.M. & Hecker M. 2006. The extracellular proteome of Bacillus licheniformis grown in different media and under different nutrient starvation conditions. Proteomics 6: 268-281.
-
(2006)
Proteomics
, vol.6
, pp. 268-281
-
-
Voigt, B.1
Schweder, T.2
Sibbald, M.J.3
Albrecht, D.4
Ehrenreich, A.5
Bernhardt, J.6
Feesche, J.7
Maurer, K.H.8
Gottschalk, G.9
van Dijl, J.M.10
Hecker, M.11
-
21
-
-
4644320152
-
Signal peptide prediction based on analysis of experimentally verified cleavage sites
-
Zhang Z. & Henzel W.J. 2004. Signal peptide prediction based on analysis of experimentally verified cleavage sites. Protein Sci. 13: 2819-2824.
-
(2004)
Protein Sci.
, vol.13
, pp. 2819-2824
-
-
Zhang, Z.1
Henzel, W.J.2
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