-
1
-
-
1542399989
-
FatiGO: a web tool for finding significant associations of gene ontology terms with groups of genes
-
Al-Shahrour F., Diaz-Uriarte R., and Dopazo J. FatiGO: a web tool for finding significant associations of gene ontology terms with groups of genes. Bioinformatics 20 (2004) 578
-
(2004)
Bioinformatics
, vol.20
, pp. 578
-
-
Al-Shahrour, F.1
Diaz-Uriarte, R.2
Dopazo, J.3
-
2
-
-
38449087712
-
Spontaneous class switch recombination in B cell lymphopoiesis generates aberrant switch junctions and is increased after VDJ rearrangement
-
Edry E., Koralov S.B., Rajewsky K., and Melamed D. Spontaneous class switch recombination in B cell lymphopoiesis generates aberrant switch junctions and is increased after VDJ rearrangement. J. Immunol. 179 (2007) 6555
-
(2007)
J. Immunol.
, vol.179
, pp. 6555
-
-
Edry, E.1
Koralov, S.B.2
Rajewsky, K.3
Melamed, D.4
-
3
-
-
36549036731
-
APE1- and APE2-dependent DNA breaks in immunoglobulin class switch recombination
-
Guikema J.E., Linehan E.K., Tsuchimoto D., Nakabeppu Y., Strauss P.R., Stavnezer J., and Schrader C.E. APE1- and APE2-dependent DNA breaks in immunoglobulin class switch recombination. J. Exp. Med. 204 (2007) 3017
-
(2007)
J. Exp. Med.
, vol.204
, pp. 3017
-
-
Guikema, J.E.1
Linehan, E.K.2
Tsuchimoto, D.3
Nakabeppu, Y.4
Strauss, P.R.5
Stavnezer, J.6
Schrader, C.E.7
-
4
-
-
0032827421
-
Transcriptional repression of Stat6-dependent interleukin-4-induced genes by BCL-6: specific regulation of iepsilon transcription and immunoglobulin E switching
-
Harris M.B., Chang C.C., Berton M.T., Danial N.N., Zhang J., Kuehner D., Ye B.H., Kvatyuk M., Pandolfi P.P., Cattoretti G., Dalla-Favera R., and Rothman P.B. Transcriptional repression of Stat6-dependent interleukin-4-induced genes by BCL-6: specific regulation of iepsilon transcription and immunoglobulin E switching. Mol. Cell Biol. 19 (1999) 7264
-
(1999)
Mol. Cell Biol.
, vol.19
, pp. 7264
-
-
Harris, M.B.1
Chang, C.C.2
Berton, M.T.3
Danial, N.N.4
Zhang, J.5
Kuehner, D.6
Ye, B.H.7
Kvatyuk, M.8
Pandolfi, P.P.9
Cattoretti, G.10
Dalla-Favera, R.11
Rothman, P.B.12
-
5
-
-
33750030491
-
Forced expression of AID facilitates the isolation of class switch variants from hybridoma cells
-
Iglesias-Ussel M.D., Fan M., Li Z., Martin A., and Scharff M.D. Forced expression of AID facilitates the isolation of class switch variants from hybridoma cells. J. Immunol. Methods 316 (2006) 59
-
(2006)
J. Immunol. Methods
, vol.316
, pp. 59
-
-
Iglesias-Ussel, M.D.1
Fan, M.2
Li, Z.3
Martin, A.4
Scharff, M.D.5
-
6
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry R.A., Bolstad B.M., Collin F., Cope L.M., Hobbs B., and Speed T.P. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res. 31 (2003) e15
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
7
-
-
36749082147
-
Base excision DNA repair defect in Gadd45a-deficient cells
-
Jung H.J., Kim E.H., Mun J.Y., Park S., Smith M.L., Han S.S., and Seo Y.R. Base excision DNA repair defect in Gadd45a-deficient cells. Oncogene 26 (2007) 7517
-
(2007)
Oncogene
, vol.26
, pp. 7517
-
-
Jung, H.J.1
Kim, E.H.2
Mun, J.Y.3
Park, S.4
Smith, M.L.5
Han, S.S.6
Seo, Y.R.7
-
8
-
-
27144533911
-
Cutting edge: double-stranded DNA breaks in the IgV region gene were detected at lower frequency in affinity-maturation impeded GANP-/- mice
-
Kawatani Y., Igarashi H., Matsui T., Kuwahara K., Fujimura S., Okamoto N., Takagi K., and Sakaguchi N. Cutting edge: double-stranded DNA breaks in the IgV region gene were detected at lower frequency in affinity-maturation impeded GANP-/- mice. J. Immunol. 175 (2005) 5615
-
(2005)
J. Immunol.
, vol.175
, pp. 5615
-
-
Kawatani, Y.1
Igarashi, H.2
Matsui, T.3
Kuwahara, K.4
Fujimura, S.5
Okamoto, N.6
Takagi, K.7
Sakaguchi, N.8
-
9
-
-
0016756272
-
Continuous cultures of fused cells secreting antibody of predefined specificity
-
Kohler G., and Milstein C. Continuous cultures of fused cells secreting antibody of predefined specificity. Nature 256 (1975) 495
-
(1975)
Nature
, vol.256
, pp. 495
-
-
Kohler, G.1
Milstein, C.2
-
10
-
-
12944266918
-
A novel nuclear phosphoprotein, GANP, is up-regulated in centrocytes of the germinal center and associated with MCM3, a protein essential for DNA replication
-
Kuwahara K., Yoshida M., Kondo E., Sakata A., Watanabe Y., Abe E., Kouno Y., Tomiyasu S., Fujimura S., Tokuhisa T., Kimura H., Ezaki T., and Sakaguchi N. A novel nuclear phosphoprotein, GANP, is up-regulated in centrocytes of the germinal center and associated with MCM3, a protein essential for DNA replication. Blood 95 (2000) 2321
-
(2000)
Blood
, vol.95
, pp. 2321
-
-
Kuwahara, K.1
Yoshida, M.2
Kondo, E.3
Sakata, A.4
Watanabe, Y.5
Abe, E.6
Kouno, Y.7
Tomiyasu, S.8
Fujimura, S.9
Tokuhisa, T.10
Kimura, H.11
Ezaki, T.12
Sakaguchi, N.13
-
11
-
-
0742270965
-
Germinal center-associated nuclear protein contributes to affinity maturation of B cell antigen receptor in T cell-dependent responses
-
Kuwahara K., Fujimura S., Takahashi Y., Nakagata N., Takemori T., Aizawa S., and Sakaguchi N. Germinal center-associated nuclear protein contributes to affinity maturation of B cell antigen receptor in T cell-dependent responses. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 1010
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 1010
-
-
Kuwahara, K.1
Fujimura, S.2
Takahashi, Y.3
Nakagata, N.4
Takemori, T.5
Aizawa, S.6
Sakaguchi, N.7
-
12
-
-
0030456271
-
Molecular comparison of cultured hybridoma cells that switch isotypes at high and low rates
-
Lin M., Spira G., and Scharff M.D. Molecular comparison of cultured hybridoma cells that switch isotypes at high and low rates. Somat. Cell Mol. Genet. 22 (1996) 329
-
(1996)
Somat. Cell Mol. Genet.
, vol.22
, pp. 329
-
-
Lin, M.1
Spira, G.2
Scharff, M.D.3
-
13
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
-
Livak K.J., and Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25 (2001) 402
-
(2001)
Methods
, vol.25
, pp. 402
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
14
-
-
0036293744
-
Association of DNA polymerase mu (pol mu) with Ku and ligase IV: role for pol mu in end-joining double-strand break repair
-
Mahajan K.N., Nick McElhinny S.A., Mitchell B.S., and Ramsden D.A. Association of DNA polymerase mu (pol mu) with Ku and ligase IV: role for pol mu in end-joining double-strand break repair. Mol. Cell Biol. 22 (2002) 5194
-
(2002)
Mol. Cell Biol.
, vol.22
, pp. 5194
-
-
Mahajan, K.N.1
Nick McElhinny, S.A.2
Mitchell, B.S.3
Ramsden, D.A.4
-
15
-
-
0018905748
-
Hybridoma proteins expressing the predominant idiotype of the antiazophenylarsonate response of A/J mice
-
Marshak-Rothstein A., Siekevitz M., Margolies M.N., Mudgett-Hunter M., and Gefter M.L. Hybridoma proteins expressing the predominant idiotype of the antiazophenylarsonate response of A/J mice. Proc. Natl. Acad. Sci. U. S. A. 77 (1980) 1120
-
(1980)
Proc. Natl. Acad. Sci. U. S. A.
, vol.77
, pp. 1120
-
-
Marshak-Rothstein, A.1
Siekevitz, M.2
Margolies, M.N.3
Mudgett-Hunter, M.4
Gefter, M.L.5
-
16
-
-
0033603340
-
Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells
-
Muramatsu M., Sankaranand V.S., Anant S., Sugai M., Kinoshita K., Davidson N.O., and Honjo T. Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells. J. Biol. Chem. 274 (1999) 18,470
-
(1999)
J. Biol. Chem.
, vol.274
-
-
Muramatsu, M.1
Sankaranand, V.S.2
Anant, S.3
Sugai, M.4
Kinoshita, K.5
Davidson, N.O.6
Honjo, T.7
-
17
-
-
13244268505
-
Impact of DNA ligase IV on nonhomologous end joining pathways during class switch recombination in human cells
-
Pan-Hammarstrom Q., Jones A.M., Lahdesmaki A., Zhou W., Gatti R.A., Hammarstrom L., Gennery A.R., and Ehrenstein M.R. Impact of DNA ligase IV on nonhomologous end joining pathways during class switch recombination in human cells. J. Exp. Med. 201 (2005) 189
-
(2005)
J. Exp. Med.
, vol.201
, pp. 189
-
-
Pan-Hammarstrom, Q.1
Jones, A.M.2
Lahdesmaki, A.3
Zhou, W.4
Gatti, R.A.5
Hammarstrom, L.6
Gennery, A.R.7
Ehrenstein, M.R.8
-
18
-
-
0035818990
-
AID is required to initiate Nbs1/gamma-H2AX focus formation and mutations at sites of class switching
-
Petersen S., Casellas R., Reina-San-Martin B., Chen H.T., Difilippantonio M.J., Wilson P.C., Hanitsch L., Celeste A., Muramatsu M., Pilch D.R., Redon C., Ried T., Bonner W.M., Honjo T., Nussenzweig M.C., and Nussenzweig A. AID is required to initiate Nbs1/gamma-H2AX focus formation and mutations at sites of class switching. Nature 414 (2001) 660
-
(2001)
Nature
, vol.414
, pp. 660
-
-
Petersen, S.1
Casellas, R.2
Reina-San-Martin, B.3
Chen, H.T.4
Difilippantonio, M.J.5
Wilson, P.C.6
Hanitsch, L.7
Celeste, A.8
Muramatsu, M.9
Pilch, D.R.10
Redon, C.11
Ried, T.12
Bonner, W.M.13
Honjo, T.14
Nussenzweig, M.C.15
Nussenzweig, A.16
-
19
-
-
0033571526
-
E2A activity is induced during B-cell activation to promote immunoglobulin class switch recombination
-
Quong M.W., Harris D.P., Swain S.L., and Murre C. E2A activity is induced during B-cell activation to promote immunoglobulin class switch recombination. Embo J. 18 (1999) 6307
-
(1999)
Embo J.
, vol.18
, pp. 6307
-
-
Quong, M.W.1
Harris, D.P.2
Swain, S.L.3
Murre, C.4
-
20
-
-
0037108463
-
Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice
-
Rada C., Williams G.T., Nilsen H., Barnes D.E., Lindahl T., and Neuberger M.S. Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice. Curr. Biol. 12 (2002) 1748
-
(2002)
Curr. Biol.
, vol.12
, pp. 1748
-
-
Rada, C.1
Williams, G.T.2
Nilsen, H.3
Barnes, D.E.4
Lindahl, T.5
Neuberger, M.S.6
-
21
-
-
0019190710
-
Isolation of variants of mouse myeloma X63 that express changed immunoglobulin class
-
Radbruch A., Liesegang B., and Rajewsky K. Isolation of variants of mouse myeloma X63 that express changed immunoglobulin class. Proc. Natl. Acad. Sci. U. S. A. 77 (1980) 2909
-
(1980)
Proc. Natl. Acad. Sci. U. S. A.
, vol.77
, pp. 2909
-
-
Radbruch, A.1
Liesegang, B.2
Rajewsky, K.3
-
22
-
-
57649196594
-
DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45
-
Rai K., Huggins I.J., James S.R., Karpf A.R., Jones D.A., and Cairns B.R. DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45. Cell 135 (2008) 1201
-
(2008)
Cell
, vol.135
, pp. 1201
-
-
Rai, K.1
Huggins, I.J.2
James, S.R.3
Karpf, A.R.4
Jones, D.A.5
Cairns, B.R.6
-
23
-
-
18444395232
-
Blimp-1 orchestrates plasma cell differentiation by extinguishing the mature B cell gene expression program
-
Shaffer A.L., Lin K.I., Kuo T.C., Yu X., Hurt E.M., Rosenwald A., Giltnane J.M., Yang L., Zhao H., Calame K., and Staudt L.M. Blimp-1 orchestrates plasma cell differentiation by extinguishing the mature B cell gene expression program. Immunity 17 (2002) 51
-
(2002)
Immunity
, vol.17
, pp. 51
-
-
Shaffer, A.L.1
Lin, K.I.2
Kuo, T.C.3
Yu, X.4
Hurt, E.M.5
Rosenwald, A.6
Giltnane, J.M.7
Yang, L.8
Zhao, H.9
Calame, K.10
Staudt, L.M.11
-
24
-
-
34447288912
-
Role for DNA repair factor XRCC4 in immunoglobulin class switch recombination
-
Soulas-Sprauel P., Le Guyader G., Rivera-Munoz P., Abramowski V., Olivier-Martin C., Goujet-Zalc C., Charneau P., and de Villartay J.P. Role for DNA repair factor XRCC4 in immunoglobulin class switch recombination. J. Exp. Med. 204 (2007) 1717
-
(2007)
J. Exp. Med.
, vol.204
, pp. 1717
-
-
Soulas-Sprauel, P.1
Le Guyader, G.2
Rivera-Munoz, P.3
Abramowski, V.4
Olivier-Martin, C.5
Goujet-Zalc, C.6
Charneau, P.7
de Villartay, J.P.8
-
25
-
-
0026504955
-
Identification of rare immunoglobulin switch variants using the ELISA spot assay
-
Spira G., and Scharff M.D. Identification of rare immunoglobulin switch variants using the ELISA spot assay. J. Immunol. Methods 148 (1992) 121
-
(1992)
J. Immunol. Methods
, vol.148
, pp. 121
-
-
Spira, G.1
Scharff, M.D.2
-
26
-
-
0021711635
-
The identification of monoclonal class switch variants by sib selection and an ELISA assay
-
Spira G., Bargellesi A., Teillaud J.L., and Scharff M.D. The identification of monoclonal class switch variants by sib selection and an ELISA assay. J. Immunol. Methods 74 (1984) 307
-
(1984)
J. Immunol. Methods
, vol.74
, pp. 307
-
-
Spira, G.1
Bargellesi, A.2
Teillaud, J.L.3
Scharff, M.D.4
-
29
-
-
0037232245
-
Essential role of Id2 in negative regulation of IgE class switching
-
Sugai M., Gonda H., Kusunoki T., Katakai T., Yokota Y., and Shimizu A. Essential role of Id2 in negative regulation of IgE class switching. Nat. Immunol. 4 (2003) 25
-
(2003)
Nat. Immunol.
, vol.4
, pp. 25
-
-
Sugai, M.1
Gonda, H.2
Kusunoki, T.3
Katakai, T.4
Yokota, Y.5
Shimizu, A.6
-
30
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher V.G., Tibshirani R., and Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 5116
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 5116
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
31
-
-
9244241060
-
Identification of an AID-independent pathway for chromosomal translocations between the Igh switch region and Myc
-
Unniraman S., Zhou S., and Schatz D.G. Identification of an AID-independent pathway for chromosomal translocations between the Igh switch region and Myc. Nat. Immunol. 5 (2004) 1117
-
(2004)
Nat. Immunol.
, vol.5
, pp. 1117
-
-
Unniraman, S.1
Zhou, S.2
Schatz, D.G.3
-
32
-
-
34848924366
-
GANP suppresses DNA recombination, measured by direct-repeat beta-galactosidase gene construct, but does not suppress the type of recombination applying to immunoglobulin genes in mammalian cells
-
Yoshida M., Kuwahara K., Shimasaki T., Nakagata N., Matsuoka M., and Sakaguchi N. GANP suppresses DNA recombination, measured by direct-repeat beta-galactosidase gene construct, but does not suppress the type of recombination applying to immunoglobulin genes in mammalian cells. Genes Cells 12 (2007) 1205
-
(2007)
Genes Cells
, vol.12
, pp. 1205
-
-
Yoshida, M.1
Kuwahara, K.2
Shimasaki, T.3
Nakagata, N.4
Matsuoka, M.5
Sakaguchi, N.6
-
33
-
-
0034813325
-
Clonal instability of V region hypermutation in the Ramos Burkitt's lymphoma cell line
-
Zhang W., Bardwell P.D., Woo C.J., Poltoratsky V., Scharff M.D., and Martin A. Clonal instability of V region hypermutation in the Ramos Burkitt's lymphoma cell line. Int. Immunol. 13 (2001) 1175
-
(2001)
Int. Immunol.
, vol.13
, pp. 1175
-
-
Zhang, W.1
Bardwell, P.D.2
Woo, C.J.3
Poltoratsky, V.4
Scharff, M.D.5
Martin, A.6
|