Differential proteomic analysis of secreted proteins from cutinase-producing Bacillus sp. SB-007

Plant Pathology Journal

Volumn 24, Issue 2, 2008, Pages 191-201

  Ban, Yeon Hee ^a   Jeon, Miri ^a   Yoon, Jihee ^b   Park, Jae Min ^a   Um, Hyun Ju ^a   Kim, Dae Soon ^a   Jung, Seung Ki ^c   Kim, Keun Young ^c   Lee, Jeewon ^d   Min, Jiho ^b   Kim, Yang Hoon ^a  

^a Chungbuk National University   (South Korea)

^b Chonbuk National University   (South Korea)

^c Bioresource Inc   (South Korea)

^d Korea University   (South Korea)

Author keywords

Bacillus sp; Cutinase activity; Secreted proteome profiling; Two dimensional gel electrophoresis

Indexed keywords

EID: 70349699867     PISSN: 15982254     EISSN: 20939280     Source Type: Journal    
DOI: 10.5423/PPJ.2008.24.2.191     Document Type: Article

References (48)

1. Antelmann, H., Darmon, E., Noone, D., Veening, J. W., Westers, H., Bron, S., Kuipers, O. P., Devine, K. M., Hecker, M. and van Dijl, J. M. 2003. The extracellular proteome of Bacillus subîilis under secretion stress conditions. Mol. Microbiol 49:143-156.
2. Antelmann, H., Sapolsky, R., Miller, B., Ferrari, E., Chotani, G, Weyler, W., Gaertner, A. and Hecker, M. 2004. Quantitative proteome profiling during the fermentation process of pleiotropic Bacillus subtilis mutants. Proîeomics 4:2408-2424.
3. Antelmann, H., Tjalsma, H., Voigt, B., Ohlmeier, S., Bron, S., van Diji, J. M. and Hecker, M. 2001. A proteomic view on genome-based signal peptide predictions. Genome Res. 11: 1484-1502.
4. Buttner, K., Bernhardt, J., Scharf, C., Schmid, R., Mader, U., Eymann, C., Antelmann, H., Volker, A., Volker, U. and Hecker, M. 2001. A comprehensive two-dimensional map of cytosolic proteins of Bacillus subtilis. Electrophoresis 22: 2908-2935.
5. Chander, H. and Ranganathan, G 1975. Role of amino acids on the growth and lipase production of Streptococcus faecalis. Experientia 31:1263.
6. Chen, Z., Franco, C. F., Baptista, R. R, Cabral, J. M., Coelho, A. V, Rodrigues, C. J. Jr. and Melo, E. P. 2006. Purification and identification of cutinase from Colletotrichum kahawae and Colletotrichum gloeosporioides. Appl Microbiol Biotechnol 73:1306-1313.
7. Chu, P. W., Yap, M. N., Wu, C. Y., Huang, C. M., Pan, F. M., Tseng, M. J. and Chen, S. T. 2000. A proteomic analysis of secreted proteins from xylan-induced Bacillus sp. strain K-l. Electrophoresis 21:1740-1745.
8. Coppee, J. Y., Auger, S., Turlin, E., Sekowska, A., Le Caer, J. P., Labas, V., Vagner, V., Danchin, A. and Martin-Verstraete, I. 2001. Sulfur-limitation-regulated proteins in Bacillus subtilis: a two-dimensional gel electrophoresis study. Microbiology 147:1631-1640.
9. Cristina, M. L. C., Maria, R. A. B. and Joaquim, M. S. C. 1998. Cutinase structure, function and biocatalytic applications. Electronic J. Biotechnol 1:160-173.
10. Cristina, M. L. C., Maria, R. A. B. and Joaquim, M. S. C. 1999. Cutinase: from molecular level to bioprocess development. Biotechnol Bioeng. 66:17-34.
11. Dartois, V., Baulard, A., Schanck, K. and Colson, C. 1992. Cloning, nucleotide sequence and expression in Escherichia coli of a lipase gene from Bacillus subtilis 168. Biochim. Biophys. Acta. 1131:253-260.
12. Eggert, T., Pencreac'h, G, Douchet, I., Verger, R. and Jaeger, K. E. 2000. A novel extracellular esterase from Bacillus subtilis and its conversion to a monoacylglycerol hydrolase. Eur. J. Biochem. 267:6459-6469.
13. Eggert, T., van Pouderoyen, G, Dijkstra, B. W. and Jaeger, K. E. 2001. Lipolytic enzymes LipA and LipB from Bacillus subtilis differ in regulation of gene expression, biochemical properties, and three-dimensional structure. FEBS Lett. 502:38-92.
14. Egmond, M. R. and de Vlieg, J. 2000. Fusarium solani pisi cutinase. Biochimie 82:1015-1021.
15. Flipsen, J. A. C, Appel, A. C. M., Van der Hijden, H. T. W. M. and Verrips, C.T. 1998. Mechanism of removal of immobilized triacylglycerol by lipolytic enzymes in a sequential laundry wash process. Enzyme Micro. Technol. 23:274-280.
16. Gerard, H. C., Fett, W. F, Osman, S. F. and Moreau, R. A. 1993. Evaluation of cutinase activity of various industrial lipases. Biotechnol Appl. Biochem. 17:181-189.
17. Hirose, I., Sano, K., Shioda, I., Kumano, M., Nakamura, K. and Yamane, K. 2000. Proteome analysis of Bacillus subtilis extracellular proteins: a two-dimensional protein electrophoretic study. Electrophoresis 146:65-75.
18. Honjo, M., Nakayama, A., Fukazawa, K., Kawamura, K., Ando, K., Hori, M. and Furutani, Y. 1990. A novel Bacillus subtilis gene involved in negative control of sporulation and degradative-enzyme production. J. Bacteriol. 172:1783-1790.
19. Jongbloed, J. D., Antelmann, H., Hecker, M., Nijland, R., Bron, S., Airaksinen, U., Pries, F., Quax, W. J., van Dijl, J. M., Braun, R G 2002. Selective contribution of the twin-arginine translocation pathway to protein secretion in Bacillus subtilis. J. Biol. Chem. 277:44068-44078.
20. Kim, D. H. 2003. Modulation of a fungal signaling by Hypovirus. Plant Pathol. J. 19:30-33.
21. Kim, Y. H., Ahn, J. Y., Moon, S. H. and Lee, J. 2005. Biodegradation and detoxification of organophosphate insecticide, malathion by Fusarium oxysporum f. sp. pisi cutinase. Chemosphere 60:1349-1355.
22. Kim, Y. H., Lee, J., Ahn, J. Y., Gu, M. B. and Moon, S. H. 2002. Enhanced degradation of an endocrine-disrupting chemical, butyl benzyl phthalate, by Fusarium oxysporum f. sp. pisi cutinase. Appl. Environ. Microbiol 68:4684-4688.
23. Kim, Y. H., Lee, J. and Moon, S. H. 2003. Uniqueness of microbial cutinases in hydrolysis of p-nitrophenyl esters. J. Microbiol. Biotechnol. 13:57-63.
24. Kolattukudy, P. E. 1984. Cutinase from fungi and pollen. In: Lipase, ed. by B. Borgstrom and T. Brockman, pp. 471-504. Elsevier, Amsterdam.
25. Lin, T. S. and Kolattukudy, P. E. 1980. Structural studies on cutinase, a glycoprotein containing novel amino acids and glucuronic acid amide at the N terminus. Eur. J. Biochem. 106:341-351.
26. Majoul, T., Bancel, E., Triboi, E., Hamida, J. B. and Branlard, G 2003. Proteomic analysis of the effect of heat stress on hexaploid wheat grain: characterization of heat-responsive proteins from total endosperm. Proîeomics 3:175-183.
27. Martin-Verstraete, I., Deutscher, J., Galinier, A. 1999. Phosphorylation of HPr and Crh by HprK, early steps in the catabolite repression signalling pathway for the Bacillus subtilis levanase operon. J. Bacteriol 181:2966-2969.
28. Martinez, C., De Geus, R, Lauwereys, M., Matthysens, G and Cambillau, C. 1992. Fusarium solani cutinase is a lipolytic enzyme with a catalytic serine accessible to solvent. Nature 356:615-618.
29. Masayama, A., Kuwana, R., Takamatsu, H., Hemmi, H., Yoshimura, T., Watabe, K. and Moriyama, R. 2007. A novel lipolytic enzyme, YcsK (LipC), located in the spore coat of Bacillus subtilis, is involved in spore germination. J. Bacteriol. 189:2369-2375.
30. Murphy, C. A., Cameron, J. A., Huang, S. J. and Vinopal, R. T. 1998. A second polycaprolactone depolymerase from Fusarium, a lipase distant from cutinase. Appl Microbiol Biotechnol 50:692-696.
31. Petersen, M. T. N., Martel, P., Petersen, E. I., Drablos, F. and Pertersen, S. B. 1997. Surface and electrostatics of cutinases. Methods in enzymology Vol. 284, ed. by B. Rubin and E.A. Dennis, pp. 130-154. Academics, New York.
32. Poulose, A. J. and Kolattukudy, P. 1988. Enzymes as agricultural chemical adjuvants. European Patent 0,272,002 Al.
33. Poulsen, K R., Sorensen, T. K., Duroux, L., Petersen, E. L, Petersen, S. B. and Wimmer, R. 2006. The interaction of Fusarium solanipisi cutinase with long chain spin label esters. Biochemistry 45:9163-9171.
34. Schaad, N. W. 1988. Laboratory Guide for Identification of Plant Pathogenic Bacteria 2nd Edition.
35. Shimao, M. 2001. Biodegradation of plastics. Cum Opin. Biotechnol 12:242-247.
36. Sinchaikul, S., Sookkheo, B., Topanuruk, S., Juan, H. F., Phutrakul, S. and Chen, S. T. 2002. Bioinformatics, functional genomics, and proteomics study of Bacillus sp. J. Chromatogr. BAnalyt. Technol Biomed. Life Sci. 771:261-287.
37. Soliday, C. L. and Kolattukudy, P. E. 1983. Primary structure of the active site region of fungal cutinase, an enzyme involved in phytopathogenesis. Biochem Biophys Res Commun. 114:1017-1022.
38. Staley, J. T., Bryant, M. P., Pfennig, N. and Holt, J. G 1989. Bergey's Manual of Systematic Bacteriology, Vol. 3, ed. by Williams and Wilkins, Baltimore.
39. Thierry, R. 1999. Silver staining of 2~D electrophoresis gels. Methods Mol Biol 112:297-311.
40. Tjalsma, H., Antelmann, H., Jongbloed, J. D., Braun, P. G, Darmon, E., Dorenbos, R., Dubois, J. Y., Westers, H., Zanen, G, Quax, W. J., Kuipers, O. P., Bron, S., Hecker, M., van Dijl, J. M. 2004. Proteomics of protein secretion by Bacillus subtilis: separating the "secrets" of the secretome. Microbiol Mol Biol Rev. 68:207-233.
41. Um, H. J., Seo, H. S., Min, J. H., Rhee, S. K., Cho, T. J., Kim, Y. H. and Lee, J. W. 2007. Pseudozyma jejuensis sp. nov., a novel cutinolytic ustilaginomycetous yeast species that is able to degrade plasdc waste. FEMS Yeast Res. 7:1035-1045.
42. van Dijl, J. M., Bolhuis, A., Tjalsma, H., Jongbloed, J. D. H., de Jong, A. and Bron, S. 2001. Protein transport pathways in Bacillus subtilis: a genome-based road map. In: Bacillus Subtilis and its Closest Relatvies: from Genes to Cells., ed. by A. L. Sonenshein, J. A. Hoch and R. Losick., pp. 337-355. American Society for Microbiology Press, Washington, DC, USA.
43. Vilain, S. and Brozel, V. S. 2006. Multivariate approach to comparing whole-cell proteomes of Bacillus cereus indicates a biofilm-specific proteome. J. Proteome Res. 5:1924-1930.
44. Voigt, B., Hoile, T., Jurgen, B., Albrecht, D., Ehrenreich, A., Veith, B., Evers, S., Maurer, K. H., Hecker, M. and Schweder, T. 2007. The glucose and nitrogen starvation response of Bacillus licheniformis. Proteomics 7:413-423.
45. Voigt, B., Schweder, T., Sibbald, M. J., Albrecht, D., Ehrenreich, A., Bernhardt, J., Feesche, J., Maurer, K. H., Gottschalk, G, van Dijl, J. M. and Hecker, M. 2006. The extracellular proteome of Bacillus licheniformis grown in different media and under different nutrient starvation conditions. Proteomics 6:268-281.
46. Wilhelm, S. 1993. The role of cutinase in fungal pathogenicity. Trends Microbiol 1:69-71.
47. Williams, S. T., Sharpe, M. E. and Holt, J. G 1989. Bergey's Manual of Systematic Bacteriology, Vol. 4. ed. by Williams and Wilkins, Baltimore.
48. Yoshida, K., Kobayashi, K., Miwa, Y., Kang, C. M., Matsunaga, M., Yamaguchi, H., Tojo, S., Yamamoto, M., Nishi, R., Ogasawara, N., Nakayama, T. and Fujita, Y. 2001. Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis. Nucleic Acids Res. 29:683-692.