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Volumn 11, Issue 10, 2009, Pages 2598-2610

In situ measurement of methane fluxes and analysis of transcribed particulate methane monooxygenase in desert soils

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; METHANE; METHANE MONOOXYGENASE; OXYGENASE;

EID: 70349663872     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2009.01984.x     Document Type: Article
Times cited : (62)

References (50)
  • 1
    • 0027341522 scopus 로고
    • Methane consumption in temperate and subarctic forest soils: Rates, vertical zonation, and responses to water and nitrogen
    • Adamsen, A.P.S. King, G.M. (1993) Methane consumption in temperate and subarctic forest soils: rates, vertical zonation, and responses to water and nitrogen. Appl Environ Microbiol 59 : 485 490.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 485-490
    • Adamsen, A.P.S.1    King, G.M.2
  • 2
    • 48249112161 scopus 로고    scopus 로고
    • Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in methylocystis sp. strain SC2
    • Baani, M. Liesack, W. (2008) Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in methylocystis sp. strain SC2. Proc Natl Acad Sci USA 105 : 10203 10208.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 10203-10208
    • Baani, M.1    Liesack, W.2
  • 3
    • 0027532251 scopus 로고
    • Kinetics of methane oxidation in oxic soils
    • Bender, M. Conrad, R. (1993) Kinetics of methane oxidation in oxic soils. Chemosphere 26 : 687 696.
    • (1993) Chemosphere , vol.26 , pp. 687-696
    • Bender, M.1    Conrad, R.2
  • 4
    • 0028594645 scopus 로고
    • Methane oxidation activity in various soils and freshwater sediments: Occurrence, characteristics, vertical profiles, and distribution on grain size fractions
    • Bender, M. Conrad, R. (1994) Methane oxidation activity in various soils and freshwater sediments: occurrence, characteristics, vertical profiles, and distribution on grain size fractions. J Geophys Res 99 : 16531 16540.
    • (1994) J Geophys Res , vol.99 , pp. 16531-16540
    • Bender, M.1    Conrad, R.2
  • 5
    • 0035458352 scopus 로고    scopus 로고
    • Comparison of pmoA PCR primer sets as tools for investigating methanotroph diversity in three Danish soils
    • Bourne, D.G., McDonald, I.R. Murrell, J.C. (2001) Comparison of pmoA PCR primer sets as tools for investigating methanotroph diversity in three Danish soils. Appl Environ Microbiol 67 : 3802 3809.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3802-3809
    • Bourne, D.G.1    McDonald, I.R.2    Murrell, J.C.3
  • 6
    • 0003238763 scopus 로고    scopus 로고
    • The methanotrophs - The families Methylococcaceae and Methylocystaceae
    • In. Dworkin, M. Falkow, S. Rosenberg, E. Schleifer, K.H. Stackebrandt, E. (eds). New York, NY, USA. Springer. pp
    • Bowman, J. (2006) The methanotrophs - the families Methylococcaceae and Methylocystaceae. In The Prokaryotes. Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K.H. Stackebrandt, E. (eds). New York, NY, USA : Springer, pp. 266 289.
    • (2006) The Prokaryotes. , pp. 266-289
    • Bowman, J.1
  • 7
    • 0242668357 scopus 로고    scopus 로고
    • MRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil
    • Bürgmann, H., Widmer, F., Sigler, W.V. Zeyer, J. (2003) mRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil. Appl Environ Microbiol 69 : 1928 1935.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1928-1935
    • Bürgmann, H.1    Widmer, F.2    Sigler, W.V.3    Zeyer, J.4
  • 8
    • 0036309299 scopus 로고    scopus 로고
    • 4-exchange between the atmosphere and untreated and limed soil of a N-saturated spruce and beech forest ecosystem in Germany
    • 4-exchange between the atmosphere and untreated and limed soil of a N-saturated spruce and beech forest ecosystem in Germany. Plant Soil 240 : 77 90.
    • (2002) Plant Soil , vol.240 , pp. 77-90
    • Butterbach-Bahl, K.1    Papen, H.2
  • 9
    • 0037010658 scopus 로고    scopus 로고
    • Minimizing artifacts and biases in chamber-based measurements of soil respiration
    • Davidson, E.A., Savage, K., Verchot, L.V. Navarro, R. (2002) Minimizing artifacts and biases in chamber-based measurements of soil respiration. Agric Forest Meteorol 113 : 21 37.
    • (2002) Agric Forest Meteorol , vol.113 , pp. 21-37
    • Davidson, E.A.1    Savage, K.2    Verchot, L.V.3    Navarro, R.4
  • 10
    • 0035163587 scopus 로고    scopus 로고
    • Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities
    • Dunbar, J., Ticknor, L.O. Kuske, C.R. (2001) Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities. Appl Environ Microbiol 67 : 190 197.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 190-197
    • Dunbar, J.1    Ticknor, L.O.2    Kuske, C.R.3
  • 11
    • 84890144621 scopus 로고    scopus 로고
    • The soil methane sink
    • In. Reay, D. Hewitt, C.N. Smith, K.A. Grace, J. (eds). Oxfordshire, UK. CABI. pp
    • Dunfield, P.F. (2007) The soil methane sink. In Greenhouse Gas Sinks. Reay, D., Hewitt, C.N., Smith, K.A. Grace, J. (eds). Oxfordshire, UK : CABI, pp. 152 170.
    • (2007) Greenhouse Gas Sinks. , pp. 152-170
    • Dunfield, P.F.1
  • 12
    • 36849030274 scopus 로고    scopus 로고
    • Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia
    • Dunfield, P.F., Yuryev, A., Senin, P., Smirnova, A.V., Stott, M.B., Hou, S., et al. (2007) Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature 450 : 879 882.
    • (2007) Nature , vol.450 , pp. 879-882
    • Dunfield, P.F.1    Yuryev, A.2    Senin, P.3    Smirnova, A.V.4    Stott, M.B.5    Hou, S.6
  • 14
    • 70349725108 scopus 로고    scopus 로고
    • Desert environments: Biological soil crusts
    • In. Bitton, G. (ed). New York, NY, USA. Wiley-Interscience. pp
    • Garcia Pichel, F. (2002) Desert environments: biological soil crusts. In Encyclopedia of Environmental Microbiology 6 Volume Set. Bitton, G. (ed). New York, NY, USA : Wiley-Interscience, pp. 1119 1023.
    • (2002) Encyclopedia of Environmental Microbiology 6 Volume Set. , pp. 1119-1023
    • Garcia Pichel, F.1
  • 16
    • 0032925877 scopus 로고    scopus 로고
    • Molecular analyses of the methane-oxidizing microbial community in rice field soil by targeting the genes of the 16S rRNA, particulate methane monooxygenase, and methanol dehydrogenase
    • Henckel, T., Friedrich, M. Conrad, R. (1999) Molecular analyses of the methane-oxidizing microbial community in rice field soil by targeting the genes of the 16S rRNA, particulate methane monooxygenase, and methanol dehydrogenase. Appl Environ Microbiol 65 : 1980 1990.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1980-1990
    • Henckel, T.1    Friedrich, M.2    Conrad, R.3
  • 17
    • 0342804286 scopus 로고    scopus 로고
    • Molecular analyses of novel methanotrophic communities in forest soil that oxidize atmospheric methane
    • Henckel, T., Jäckel, U., Schnell, S. Conrad, R. (2000) Molecular analyses of novel methanotrophic communities in forest soil that oxidize atmospheric methane. Appl Environ Microbiol 66 : 1801 1808.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1801-1808
    • Henckel, T.1    Jäckel, U.2    Schnell, S.3    Conrad, R.4
  • 18
    • 0028791540 scopus 로고
    • Evidence that participate methane monooxygenase and ammonia monooxygenase may be evolutionarily related
    • Holmes, A.J., Costello, A., Lidstrom, M.E. Murrell, J.C. (1995) Evidence that participate methane monooxygenase and ammonia monooxygenase may be evolutionarily related. FEMS Microbiol Lett 132 : 203 208.
    • (1995) FEMS Microbiol Lett , vol.132 , pp. 203-208
    • Holmes, A.J.1    Costello, A.2    Lidstrom, M.E.3    Murrell, J.C.4
  • 19
    • 0032772094 scopus 로고    scopus 로고
    • Characterization of methanotrophic bacterial populations in soils showing atmospheric methane uptake
    • Holmes, A.J., Roslev, P., McDonald, I.R., Iversen, N., Henriksen, K. Murrell, J.C. (1999) Characterization of methanotrophic bacterial populations in soils showing atmospheric methane uptake. Appl Environ Microbiol 65 : 3312 3318.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3312-3318
    • Holmes, A.J.1    Roslev, P.2    McDonald, I.R.3    Iversen, N.4    Henriksen, K.5    Murrell, J.C.6
  • 20
    • 18444409388 scopus 로고    scopus 로고
    • Methane-oxidizing bacteria in a California upland grassland soil: Diversity and response to simulated global change
    • Horz, H., Rich, V., Avrahami, S. Bohannan, B.J.M. (2005) Methane-oxidizing bacteria in a California upland grassland soil: diversity and response to simulated global change. Appl Environ Microbiol 71 : 2642 2652.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 2642-2652
    • Horz, H.1    Rich, V.2    Avrahami, S.3    Bohannan, B.J.M.4
  • 21
    • 0035679475 scopus 로고    scopus 로고
    • Vents and seals in non-steady-state chambers used for measuring gas exchange between soil and the atmosphere
    • Hutchinson, G.L. Livingston, G.P. (2001) Vents and seals in non-steady-state chambers used for measuring gas exchange between soil and the atmosphere. Eur J Soil Sci 52 : 675 682.
    • (2001) Eur J Soil Sci , vol.52 , pp. 675-682
    • Hutchinson, G.L.1    Livingston, G.P.2
  • 22
    • 0032145970 scopus 로고    scopus 로고
    • Atmospheric methane consumption in adjacent arable and forest soil systems
    • Jensen, S. Olsen, R.A. (1998) Atmospheric methane consumption in adjacent arable and forest soil systems. Soil Biol Biochem 30 : 1187 1193.
    • (1998) Soil Biol Biochem , vol.30 , pp. 1187-1193
    • Jensen, S.1    Olsen, R.A.2
  • 24
    • 0026616324 scopus 로고
    • Effects of temperature on methane consumption in a forest soil and in pure cultures of the methanotroph Methylomonas rubra
    • King, G.M. Adamsen, A.P.S. (1992) Effects of temperature on methane consumption in a forest soil and in pure cultures of the methanotroph Methylomonas rubra. Appl Environ Microbiol 58 : 2758 2763.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 2758-2763
    • King, G.M.1    Adamsen, A.P.S.2
  • 25
    • 0242405670 scopus 로고    scopus 로고
    • Diversity and activity of methanotrophic bacteria in different upland soils
    • Knief, C., Lipski, A. Dunfield, P.F. (2003) Diversity and activity of methanotrophic bacteria in different upland soils. Appl Environ Microbiol 69 : 6703 6714.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6703-6714
    • Knief, C.1    Lipski, A.2    Dunfield, P.F.3
  • 27
    • 22744440684 scopus 로고    scopus 로고
    • Abundance and activity of uncultured methanotrophic bacteria involved in the consumption of atmospheric methane in two forest soils
    • Kolb, S., Knief, C., Dunfield, P.F. Conrad, R. (2005) Abundance and activity of uncultured methanotrophic bacteria involved in the consumption of atmospheric methane in two forest soils. Environ Microbiol 7 : 1150 1161.
    • (2005) Environ Microbiol , vol.7 , pp. 1150-1161
    • Kolb, S.1    Knief, C.2    Dunfield, P.F.3    Conrad, R.4
  • 28
    • 0027451174 scopus 로고
    • Oxidation of atmospheric methane in soil - Measurements in the field, in soil cores and in soil samples
    • Koschorreck, M. Conrad, R. (1993) Oxidation of atmospheric methane in soil - measurements in the field, in soil cores and in soil samples. Global Biogeochem Cycles 7 : 109 121.
    • (1993) Global Biogeochem Cycles , vol.7 , pp. 109-121
    • Koschorreck, M.1    Conrad, R.2
  • 29
    • 0034782218 scopus 로고    scopus 로고
    • Ecologically meaningful transformations for ordination of species data
    • Legendre, P. Gallagher, E. (2001) Ecologically meaningful transformations for ordination of species data. Oecologia 129 : 271 280.
    • (2001) Oecologia , vol.129 , pp. 271-280
    • Legendre, P.1    Gallagher, E.2
  • 30
    • 40549104438 scopus 로고    scopus 로고
    • Molecular ecology techniques for the study of aerobic methanotrophs
    • McDonald, I.R., Bodrossy, L., Chen, Y. Murrell, J.C. (2008) Molecular ecology techniques for the study of aerobic methanotrophs. Appl Environ Microbiol 74 : 1305 1315.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 1305-1315
    • McDonald, I.R.1    Bodrossy, L.2    Chen, Y.3    Murrell, J.C.4
  • 31
    • 0028793393 scopus 로고
    • The regulation of methane oxidation in soil
    • Mancinelli, R.L. (1995) The regulation of methane oxidation in soil. Annu Rev Microbiol 49 : 581 605.
    • (1995) Annu Rev Microbiol , vol.49 , pp. 581-605
    • Mancinelli, R.L.1
  • 32
    • 0038002864 scopus 로고    scopus 로고
    • Interactive effects of tree species and soil moisture on methane consumption
    • Menyailo, O.V. Hungate, B.A. (2003) Interactive effects of tree species and soil moisture on methane consumption. Soil Biol Biochem 35 : 625 628.
    • (2003) Soil Biol Biochem , vol.35 , pp. 625-628
    • Menyailo, O.V.1    Hungate, B.A.2
  • 34
    • 0031716660 scopus 로고    scopus 로고
    • Molecular methods for the study of methanotroph ecology
    • Murrell, J., McDonald, I.R. Bourne, D.G. (1998) Molecular methods for the study of methanotroph ecology. FEMS Microbiol Ecol 27 : 103 114.
    • (1998) FEMS Microbiol Ecol , vol.27 , pp. 103-114
    • Murrell, J.1    McDonald, I.R.2    Bourne, D.G.3
  • 35
    • 0034086965 scopus 로고    scopus 로고
    • Molecular biology and regulation of methane monooxygenase
    • Murrell, J.C., Gilbert, B. McDonald, I.R. (2000) Molecular biology and regulation of methane monooxygenase. Arch Microbiol 173 : 325 332.
    • (2000) Arch Microbiol , vol.173 , pp. 325-332
    • Murrell, J.C.1    Gilbert, B.2    McDonald, I.R.3
  • 36
    • 48249146212 scopus 로고    scopus 로고
    • State and trends of the world's deserts
    • In. Ezcurra, E. (ed.). Nairobi, Kenya. United Nations Environment Programme. pp
    • Navone, S. Abraham, E. (2006) State and trends of the world's deserts. In Global Deserts Outlook. Ezcurra, E. (ed.). Nairobi, Kenya : United Nations Environment Programme, pp. 73 88.
    • (2006) Global Deserts Outlook. , pp. 73-88
    • Navone, S.1    Abraham, E.2
  • 37
    • 0029667091 scopus 로고    scopus 로고
    • 4 production upon flooding of oxic upland soils
    • 4 production upon flooding of oxic upland soils. Soil Biol Biochem 28 : 371 382.
    • (1996) Soil Biol Biochem , vol.28 , pp. 371-382
    • Peters, V.1    Conrad, R.2
  • 38
    • 0029667412 scopus 로고    scopus 로고
    • Estimation of global biogeochemical controls and seasonality in soil methane consumption
    • Potter, C.S., Davidson, E.A. Verchot, L.V. (1996) Estimation of global biogeochemical controls and seasonality in soil methane consumption. Chemosphere 32 : 2219 2246.
    • (1996) Chemosphere , vol.32 , pp. 2219-2246
    • Potter, C.S.1    Davidson, E.A.2    Verchot, L.V.3
  • 40
    • 0034791782 scopus 로고    scopus 로고
    • Effects of land-use on the activity and diversity of methane oxidizing bacteria in forest soils
    • Reay, D.S., Radajewski, S., Murrell, J.C., McNamara, N. Nedwell, D.B. (2001) Effects of land-use on the activity and diversity of methane oxidizing bacteria in forest soils. Soil Biol Biochem 33 : 1613 1623.
    • (2001) Soil Biol Biochem , vol.33 , pp. 1613-1623
    • Reay, D.S.1    Radajewski, S.2    Murrell, J.C.3    McNamara, N.4    Nedwell, D.B.5
  • 41
    • 12544260665 scopus 로고    scopus 로고
    • Effect of tree species on methane and ammonium oxidation capacity in forest soils
    • Reay, D.S., Nedwell, D.B., McNamara, N. Ineson, P. (2005) Effect of tree species on methane and ammonium oxidation capacity in forest soils. Soil Biol Biochem 37 : 719 730.
    • (2005) Soil Biol Biochem , vol.37 , pp. 719-730
    • Reay, D.S.1    Nedwell, D.B.2    McNamara, N.3    Ineson, P.4
  • 42
    • 0029810963 scopus 로고    scopus 로고
    • Responses of methanotrophic activity in soils and cultures to water stress
    • Schnell, S. King, G. (1996) Responses of methanotrophic activity in soils and cultures to water stress. Appl Environ Microbiol 62 : 3203 3209.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3203-3209
    • Schnell, S.1    King, G.2
  • 44
    • 0033746484 scopus 로고    scopus 로고
    • Oxidation of atmospheric methane in northern European soils, comparison with other ecosystems, and uncertainties in the global terrestrial sink
    • Smith, K.A., Dobbie, K.E., Ball, B.C., Bakken, L.R., Sitaula, B.K., Hansen, S., et al. (2000) Oxidation of atmospheric methane in northern European soils, comparison with other ecosystems, and uncertainties in the global terrestrial sink. Global Change Biol 6 : 791 803.
    • (2000) Global Change Biol , vol.6 , pp. 791-803
    • Smith, K.A.1    Dobbie, K.E.2    Ball, B.C.3    Bakken, L.R.4    Sitaula, B.K.5    Hansen, S.6
  • 45
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-vi-hpc: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. (2006) RAxML-vi-hpc: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 : 2688 2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 47
    • 34247386318 scopus 로고    scopus 로고
    • Methane uptake in soils from Pinus radiata plantations, a reverting shrubland and adjacent pastures: Effects of land-use change, and soil texture, water and mineral nitrogen
    • Tate, K., Ross, D., Saggar, S., Hedley, C., Dando, J., Singh, B. Lambie, S. (2007) Methane uptake in soils from Pinus radiata plantations, a reverting shrubland and adjacent pastures: effects of land-use change, and soil texture, water and mineral nitrogen. Soil Biol Biochem 39 : 1437 1449.
    • (2007) Soil Biol Biochem , vol.39 , pp. 1437-1449
    • Tate, K.1    Ross, D.2    Saggar, S.3    Hedley, C.4    Dando, J.5    Singh, B.6    Lambie, S.7
  • 48
    • 0029669064 scopus 로고    scopus 로고
    • Methane consumption by montane soils: Implications for positive and negative feedback with climatic change
    • Torn, M.S. Harte, J. (1996) Methane consumption by montane soils: implications for positive and negative feedback with climatic change. Biogeochemistry 32 : 53 67.
    • (1996) Biogeochemistry , vol.32 , pp. 53-67
    • Torn, M.S.1    Harte, J.2


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