메뉴 건너뛰기




Volumn 123, Issue 5, 2009, Pages 413-418

Reduced-volume and low-volume typing of Y-chromosomal SNPs to obtain Finnish Y-chromosomal compound haplotypes

Author keywords

Chip; Finland; Low volume PCR; Population genetic study; SNP; Y chromosome

Indexed keywords

ARTICLE; CAPILLARY ELECTROPHORESIS; COMPARATIVE STUDY; CONTROLLED STUDY; GENE SEQUENCE; GENETIC ANALYSIS; HAPLOTYPE; HUMAN; MICROTITER PLATE ASSAY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SENSITIVITY ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; Y CHROMOSOME;

EID: 70349653086     PISSN: 09379827     EISSN: 14371596     Source Type: Journal    
DOI: 10.1007/s00414-009-0358-3     Document Type: Article
Times cited : (3)

References (35)
  • 1
    • 34147106043 scopus 로고    scopus 로고
    • Candidate SNPs for a universal individual identification panel
    • DOI 10.1007/s00439-007-0342-2
    • AJ Pakstis WC Speed JR Kidd KK Kidd 2007 Candidate SNPs for a universal individual identification panel Hum Genet 121 305-317 17333283 10.1007/s00439-007-0342-2 (Pubitemid 46554667)
    • (2007) Human Genetics , vol.121 , Issue.3-4 , pp. 305-317
    • Pakstis, A.J.1    Speed, W.C.2    Kidd, J.R.3    Kidd, K.K.4
  • 2
    • 33748563938 scopus 로고    scopus 로고
    • SNP genotyping by multiplex amplification and microarrays assay for forensic application
    • DOI 10.1016/j.forsciint.2006.06.010, PII S0379073806003768, 17th Triennial Meeting of the International Association of Forensic Sciences 2005
    • L Li CT Li RY Li, et al. 2006 SNP genotyping by multiplex amplification and microarrays assay for forensic application Forensic Sci Int 162 74-79 16884875 10.1016/j.forsciint.2006.06.010 1:CAS:528:DC%2BD28Xps1ChtLw%3D (Pubitemid 44374223)
    • (2006) Forensic Science International , vol.162 , Issue.1-3 , pp. 74-79
    • Li, L.1    Li, C.-T.2    Li, R.-Y.3    Liu, Y.4    Lin, Y.5    Que, T.-Z.6    Sun, M.-Q.7    Li, Y.8
  • 3
    • 42149173752 scopus 로고    scopus 로고
    • Analysis of Y-chromosomal SNP haplogroups and STR haplotypes in an Algerian population sample
    • 17909833 10.1007/s00414-007-0203-5 1:STN:280:DC%2BD1c3ksVentw%3D%3D
    • C Robino F Crobu C Di Gaetano, et al. 2008 Analysis of Y-chromosomal SNP haplogroups and STR haplotypes in an Algerian population sample Int J Legal Med 122 251-255 17909833 10.1007/s00414-007-0203-5 1:STN:280:DC%2BD1c3ksVentw%3D%3D
    • (2008) Int J Legal Med , vol.122 , pp. 251-255
    • Robino, C.1    Crobu, F.2    Di Gaetano, C.3
  • 5
    • 29244447112 scopus 로고    scopus 로고
    • Characterization of mtDNA SNP typing and mixture ratio assessment with simultaneous real-time PCR quantification of both allelic states
    • DOI 10.1007/s00414-005-0024-3
    • H Niederstätter MD Coble P Grubwieser TJ Parsons W Parson 2006 Characterization of mtDNA SNP typing and mixture ratio assessment with simultaneous real-time PCR quantification of both allelic states Int J Legal Med 120 18-23 16088411 10.1007/s00414-005-0024-3 (Pubitemid 41830900)
    • (2006) International Journal of Legal Medicine , vol.120 , Issue.1 , pp. 18-23
    • Niederstatter, H.1    Coble, M.D.2    Grubwieser, P.3    Parsons, T.J.4    Parson, W.5
  • 6
    • 33646557707 scopus 로고    scopus 로고
    • A multiplex assay with 52 single nucleotide polymorphisms for human identification
    • 16586411 10.1002/elps.200500671 1:CAS:528:DC%2BD28XkvFKrs7w%3D
    • JJ Sanchez C Phillips C Børsting, et al. 2006 A multiplex assay with 52 single nucleotide polymorphisms for human identification Electrophoresis 27 1713-1724 16586411 10.1002/elps.200500671 1:CAS:528:DC%2BD28XkvFKrs7w%3D
    • (2006) Electrophoresis , vol.27 , pp. 1713-1724
    • Sanchez, J.J.1    Phillips, C.2    Børsting, C.3
  • 7
    • 35348909587 scopus 로고    scopus 로고
    • Forensic efficiency of microsatellites and single nucleotide polymorphisms on the X chromosome
    • DOI 10.1007/s00414-007-0169-3
    • MT Zarrabeitia V Mijares JA Riancho 2007 Forensic efficiency of microsatellites and single nucleotide polymorphisms on the X chromosome Int J Legal Med 121 431-437 10.1007/s00414-007-0169-3 (Pubitemid 47573390)
    • (2007) International Journal of Legal Medicine , vol.121 , Issue.6 , pp. 433-437
    • Zarrabeitia, M.T.1    Mijares, V.2    Riancho, J.A.3
  • 8
    • 0035874087 scopus 로고    scopus 로고
    • The use of the LightCycler for the detection of Y chromosome SNPs
    • DOI 10.1016/S0379-0738(01)00386-3, PII S0379073801003863
    • M Lareu J Puente B Sobrino B Quintans M Brion A Carracedo 2001 The use of the LightCycler for the detection of Y chromosome SNPs Forensic Sci Int 118 163-118 11311831 10.1016/S0379-0738(01)00386-3 1:CAS:528:DC%2BD3MXislGltrk%3D (Pubitemid 32331907)
    • (2001) Forensic Science International , vol.118 , Issue.2-3 , pp. 163-168
    • Lareu, M.1    Puente, J.2    Sobrino, B.3    Quintans, B.4    Brion, M.5    Carracedo, A.6
  • 9
    • 21644450685 scopus 로고    scopus 로고
    • SNP typing in forensic genetics: A review
    • 15570103 1:CAS:528:DC%2BD2MXktlehsbw%3D
    • B Sobrino A Carracedo 2005 SNP typing in forensic genetics: a review Methods Mol Biol 297 107-126 15570103 1:CAS:528:DC%2BD2MXktlehsbw%3D
    • (2005) Methods Mol Biol , vol.297 , pp. 107-126
    • Sobrino, B.1    Carracedo, A.2
  • 11
    • 33845749061 scopus 로고    scopus 로고
    • Low volume amplification and sequencing of mitochondrial DNA on a chemically structured chip
    • DOI 10.1007/s00414-006-0125-7
    • S Lutz-Bonengel T Sänger M Heinrich U Schön U Schmidt 2007 Low volume amplification and sequencing of mitochondrial DNA on a chemically structured chip Int J Legal Med 121 68 73 17093971 10.1007/s00414-006-0125-7 (Pubitemid 46009476)
    • (2007) International Journal of Legal Medicine , vol.121 , Issue.1 , pp. 68-73
    • Lutz-Bonengel, S.1    Sanger, T.2    Heinrich, M.3    Schon, U.4    Schmidt, U.5
  • 12
    • 0035080951 scopus 로고    scopus 로고
    • Y-chromosomal SNPs in finno-ugric-speaking populations analyzed by minisequencing on microarrays
    • DOI 10.1101/gr.156301
    • M Raitio K Lindroos M Laukkanen, et al. 2001 Y-chromosomal SNPs in Finno-Ugric-speaking populations analyzed by minisequencing on microarrays Genome Res 11 471 482 11230171 10.1101/gr.156301 1:CAS:528:DC%2BD3MXhvVOntrk%3D (Pubitemid 32243857)
    • (2001) Genome Research , vol.11 , Issue.3 , pp. 471-482
    • Raitio, M.1    Lindroos, K.2    Laukkanen, M.3    Pastinen, T.4    Sistonen, P.5    Sajantila, A.6    Syvanen, A.-C.7
  • 14
    • 0029943833 scopus 로고    scopus 로고
    • The genetic relationship between the Finns and the Finnish Saami (Lapps): Analysis of nuclear DNA and mtDNA
    • 8651309 1:CAS:528:DyaK28XjslaktL0%3D
    • P Lahermo A Sajantila P Sistonen, et al. 1996 The genetic relationship between the Finns and the Finnish Saami (Lapps): analysis of nuclear DNA and mtDNA Am J Hum Genet 58 1309 1322 8651309 1:CAS:528:DyaK28XjslaktL0%3D
    • (1996) Am J Hum Genet , vol.58 , pp. 1309-1322
    • Lahermo, P.1    Sajantila, A.2    Sistonen, P.3
  • 15
    • 0015436884 scopus 로고
    • The Finnish population structure. A genetic and genealogical study
    • 4680662 10.1111/j.1601-5223.1972.tb01021.x 1:STN:280:DyaE2M7ltFaksg%3D%3D
    • HR Nevanlinna 1972 The Finnish population structure. A genetic and genealogical study Hereditas 71 195 236 4680662 10.1111/j.1601-5223.1972. tb01021.x 1:STN:280:DyaE2M7ltFaksg%3D%3D
    • (1972) Hereditas , vol.71 , pp. 195-236
    • Nevanlinna, H.R.1
  • 18
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver. 3.0: An integrated software package for population genetics data analysis
    • 19325852 1:CAS:528:DC%2BD28XjsFSltg%3D%3D
    • L Excoffier G Laval S Schneider 2005 Arlequin ver. 3.0: an integrated software package for population genetics data analysis Evolutionary Bioinformatics Online 1 47 50 19325852 1:CAS:528:DC%2BD28XjsFSltg%3D%3D
    • (2005) Evolutionary Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 19
    • 0036178949 scopus 로고    scopus 로고
    • A nomenclature system for the tree of human Y-Chromosomal binary haplogroups
    • DOI 10.1101/gr.217602
    • Y Chromosome Consortium 2002 A nomenclature system for the tree of human Y-chromosomal binary haplogroups Genome Res 12 339 348 10.1101/gr.217602 (Pubitemid 34163001)
    • (2002) Genome Research , vol.12 , Issue.2 , pp. 339-348
    • Hammer, M.1
  • 20
    • 43149087535 scopus 로고    scopus 로고
    • New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree
    • DOI 10.1101/gr.7172008
    • TM Karafet FL Mendez MB Meilerman, et al. 2008 New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree Genome Res 18 830 838 18385274 10.1101/gr.7172008 1:CAS:528:DC%2BD1cXlslChsLk%3D (Pubitemid 351645073)
    • (2008) Genome Research , vol.18 , Issue.5 , pp. 830-838
    • Karafet, T.M.1    Mendez, F.L.2    Meilerman, M.B.3    Underhill, P.A.4    Zegura, S.L.5    Hammer, M.F.6
  • 21
    • 12444293829 scopus 로고    scopus 로고
    • Hierarchical analysis of 30 Y-chromosome SNPs in European populations
    • 15095093 10.1007/s00414-004-0439-2
    • M Brion B Sobrino A Blanco-Verea MV Lareu A Carracedo 2004 Hierarchical analysis of 30 Y-chromosome SNPs in European populations Int J Legal Med 119 10 15 15095093 10.1007/s00414-004-0439-2
    • (2004) Int J Legal Med , vol.119 , pp. 10-15
    • Brion, M.1    Sobrino, B.2    Blanco-Verea, A.3    Lareu, M.V.4    Carracedo, A.5
  • 25
    • 33748115079 scopus 로고    scopus 로고
    • Regional differences among the Finns: A Y-chromosomal perspective
    • 16644145 10.1016/j.gene.2006.03.004 1:CAS:528:DC%2BD28XmsVGmurk%3D
    • T Lappalainen S Koivumäki E Salmela, et al. 2006 Regional differences among the Finns: a Y-chromosomal perspective Gene 376 207 215 16644145 10.1016/j.gene.2006.03.004 1:CAS:528:DC%2BD28XmsVGmurk%3D
    • (2006) Gene , vol.376 , pp. 207-215
    • Lappalainen, T.1    Koivumäki, S.2    Salmela, E.3
  • 27
    • 0037605877 scopus 로고    scopus 로고
    • Finnish disease heritage II: Population prehistory and genetic roots of Finns
    • 12627296
    • R Norio 2003 Finnish disease heritage II: population prehistory and genetic roots of Finns Hum Genet 112 457 469 12627296
    • (2003) Hum Genet , vol.112 , pp. 457-469
    • Norio, R.1
  • 29
    • 34248577039 scopus 로고    scopus 로고
    • High degree of Y-chromosomal divergence within Finland-forensic aspects
    • DOI 10.1016/j.fsigen.2007.02.001, PII S1872497307000579, DNA in Forensics 2006
    • JU Palo M Hedman I Ulmanen M Lukka A Sajantila 2007 High degree of Y-chromosomal divergence within Finland-forensic aspects Forensic Sci Int Genet 1 120 124 19083741 10.1016/j.fsigen.2007.02.001 (Pubitemid 46760400)
    • (2007) Forensic Science International: Genetics , vol.1 , Issue.2 , pp. 120-124
    • Palo, J.U.1    Hedman, M.2    Ulmanen, I.3    Lukka, M.4    Sajantila, A.5
  • 30
    • 33746323941 scopus 로고    scopus 로고
    • Y-chromosome diversity in Sweden - A long-time perspective
    • DOI 10.1038/sj.ejhg.5201651, PII 5201651
    • AO Karlsson T Wallerström A Götherström G Holmlund 2006 Y-chromosome diversity in Sweden-a long-time perspective Eur J Hum Genet 14 963 970 16724001 10.1038/sj.ejhg.5201651 1:CAS:528:DC%2BD28Xnt1ans7s%3D (Pubitemid 44111634)
    • (2006) European Journal of Human Genetics , vol.14 , Issue.8 , pp. 963-970
    • Karlsson, A.O.1    Wallerstrom, T.2    Gotherstrom, A.3    Holmlund, G.4
  • 32
    • 53849134114 scopus 로고    scopus 로고
    • The effect of number of loci on geographical structuring and forensic applicability of Y-STR data in Finland
    • 18548267 10.1007/s00414-008-0250-6
    • JU Palo M Pirttimaa A Bengs V Johnsson I Ulmanen M Lukka B Udd A Sajantila 2008 The effect of number of loci on geographical structuring and forensic applicability of Y-STR data in Finland Int J Legal Med 122 449 456 18548267 10.1007/s00414-008-0250-6
    • (2008) Int J Legal Med , vol.122 , pp. 449-456
    • Palo, J.U.1    Pirttimaa, M.2    Bengs, A.3    Johnsson, V.4    Ulmanen, I.5    Lukka, M.6    Udd, B.7    Sajantila, A.8
  • 33
    • 34248592091 scopus 로고    scopus 로고
    • Y chromosome haplotype reference database (YHRD): Update
    • DOI 10.1016/j.fsigen.2007.01.017, PII S1872497307000464, DNA in Forensics 2006
    • S Willuweit L Roewer 2007 Y chromosome haplotype reference database (YHRD): update Forensic Sci Int Genet 1 83 87 19083734 10.1016/j.fsigen.2007.01. 017 (Pubitemid 46760391)
    • (2007) Forensic Science International: Genetics , vol.1 , Issue.2 , pp. 83-87
    • Willuweit, S.1    Roewer, L.2
  • 34
    • 1942485486 scopus 로고    scopus 로고
    • Analysis of 16 Y STR loci in the Finnish population reveals a local reduction in the diversity of male lineages
    • DOI 10.1016/j.forsciint.2003.07.003, PII S0379073803003578
    • M Hedman V Pimenoff M Lukka P Sistonen A Sajantila 2004 Analysis of 16 Y STR loci in the Finnish population reveals a local reduction in the diversity of male lineages Forensic Sci Int 142 37 43 15110072 10.1016/j.forsciint.2003.07. 003 1:CAS:528:DC%2BD2cXjtl2ktL0%3D (Pubitemid 38510570)
    • (2004) Forensic Science International , vol.142 , Issue.1 , pp. 37-43
    • Hedman, M.1    Pimenoff, V.2    Lukka, M.3    Sistonen, P.4    Sajantila, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.